- using R Under development (unstable) (2024-12-05 r87423)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘robustlmm/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘robustlmm’ version ‘3.3-1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘robustlmm’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
- used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [3s/4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking whether startup messages can be suppressed ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s/28s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
compare.Rd: xtable, print.xtable
fitDatasets.Rd: lmer
getME.Rd: merMod-class, fixef, glmer, glmerControl, ranef
prepareMixedEffectDataset.Rd: lmer
processFit.Rd: lmer
rlmer.Rd: lmer
rlmerMod-class.Rd: lmer, fixef.merMod, isGLMM, isLMM, isNLMM, isREML,
predict.merMod, ranef.merMod, VarCorr.merMod, merMod
robustlmm-package.Rd: lmer, lme4
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [15s/17s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [61s/77s] OK
Running ‘DAS-scale.R’ [0s/0s]
Running ‘DASvar-fallback.R’ [4s/5s]
Running ‘PsiFunction.R’ [4s/6s]
Running ‘asymptoticEfficiency.R’ [3s/3s]
Running ‘compare-methods.R’ [8s/11s]
Comparing ‘compare-methods.Rout’ to ‘compare-methods.Rout.save’ ... OK
Running ‘expectations.R’ [0s/0s]
Running ‘fitDatasets.R’ [22s/25s]
Running ‘genericFunctions.R’ [3s/4s]
Running ‘getME.R’ [3s/4s]
Comparing ‘getME.Rout’ to ‘getME.Rout.save’ ... OK
Running ‘multipleGroupingFactorsTestData.R’ [0s/0s]
Running ‘offset.R’ [3s/4s]
Running ‘psi-rho-funs.R’ [3s/3s]
Running ‘rlmerMod.R’ [0s/0s]
Running ‘simulationStudies.R’ [2s/3s]
Running ‘subset.R’ [0s/0s]
Running ‘tau.R’ [0s/0s]
Running ‘testMatrices.R’ [0s/0s]
Running ‘weights.R’ [5s/6s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [46s/62s] OK
- checking PDF version of manual ... [5s/7s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE