Install log for 'ribiosUtils'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘ribiosUtils’ ...
** this is package ‘ribiosUtils’ version ‘1.7.7’
** package ‘ribiosUtils’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’
make[1]: Entering directory '/tmp/RtmpYRnewi/R.INSTALL29caad75fd26c5/ribiosUtils/src'
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c affyfileHandler.c -o affyfileHandler.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c algutil.c -o algutil.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c alphatrans.c -o alphatrans.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c arg.c -o arg.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c array.c -o array.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c avlTree.c -o avlTree.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c binalgparser.c -o binalgparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bitmap.c -o bitmap.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c biurl.c -o biurl.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c blastdb.c -o blastdb.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c blastparser.c -o blastparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c chemutil.c -o chemutil.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c combi.c -o combi.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c eval.c -o eval.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c forest.c -o forest.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c format.c -o format.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c fuzzparser.c -o fuzzparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c geometry.c -o geometry.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c graphalgo.c -o graphalgo.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c graphics.c -o graphics.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hash.c -o hash.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hierclus.c -o hierclus.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hlrmisc.c -o hlrmisc.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c hmmparser.c -o hmmparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c html.c -o html.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c htmlform.c -o htmlform.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c linestream.c -o linestream.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lnk.c -o lnk.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c log.c -o log.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c matvec.c -o matvec.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c msfparser.c -o msfparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pagedesign.c -o pagedesign.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c patternmatch.c -o patternmatch.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pearsonfastaparser.c -o pearsonfastaparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c phraplightparser.c -o phraplightparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c plabla.c -o plabla.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c primer3parser.c -o primer3parser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c properties.c -o properties.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pwdecode.c -o pwdecode.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c r_endec.c -o r_endec.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c r_mmatch.c -o r_mmatch.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c r_trim.c -o r_trim.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c rdbu.c -o rdbu.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c recipes.c -o recipes.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c seqautil.c -o seqautil.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sequenceAlignment.c -o sequenceAlignment.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c sequtil.c -o sequtil.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c statistics.c -o statistics.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c stringlist.c -o stringlist.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wiseparser.c -o wiseparser.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c wwwsession.c -o wwwsession.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c xmlbuilder.c -o xmlbuilder.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c xmlparser.c -o xmlparser.o
gcc-15 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o ribiosUtils.so affyfileHandler.o algutil.o alphatrans.o arg.o array.o avlTree.o binalgparser.o bitmap.o biurl.o blastdb.o blastparser.o chemutil.o combi.o eval.o forest.o format.o fuzzparser.o geometry.o graphalgo.o graphics.o hash.o hierclus.o hlrmisc.o hmmparser.o html.o htmlform.o init.o linestream.o lnk.o log.o matvec.o msfparser.o pagedesign.o patternmatch.o pearsonfastaparser.o phraplightparser.o plabla.o primer3parser.o properties.o pwdecode.o r_endec.o r_mmatch.o r_trim.o rdbu.o recipes.o seqautil.o sequenceAlignment.o sequtil.o statistics.o stringlist.o wiseparser.o wwwsession.o xmlbuilder.o xmlparser.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpYRnewi/R.INSTALL29caad75fd26c5/ribiosUtils/src'
make[1]: Entering directory '/tmp/RtmpYRnewi/R.INSTALL29caad75fd26c5/ribiosUtils/src'
make[1]: Leaving directory '/tmp/RtmpYRnewi/R.INSTALL29caad75fd26c5/ribiosUtils/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-ribiosUtils/00new/ribiosUtils/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ribiosUtils)