• using R Under development (unstable) (2025-11-14 r89021)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-7) 15.2.0     GNU Fortran (Debian 15.2.0-7) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘refund/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘refund’ version ‘0.1-37’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘refund’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/3s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [43s/56s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... WARNING Codoc mismatches from Rd file 'pfr_plot.gam.Rd': plot.random.effect   Code: function(x, P = NULL, data = NULL, label = "", partial.resids =                  FALSE, rug = TRUE, se = TRUE, scale = -1, n = 100, n2                  = 40, n3 = 3, theta = 30, phi = 30, jit = FALSE, xlab                  = NULL, ylab = NULL, main = NULL, ylim = NULL, xlim =                  NULL, too.far = 0.1, shade.col = "gray80", shift = 0,                  trans = I, by.resids = FALSE, scheme = 0, ...)   Docs: function(x, P = NULL, data = NULL, label = "", se1.mult = 1,                  se2.mult = 2, partial.resids = FALSE, rug = TRUE, se =                  TRUE, scale = -1, n = 100, n2 = 40, n3 = 3, theta =                  30, phi = 30, jit = FALSE, xlab = NULL, ylab = NULL,                  main = NULL, ylim = NULL, xlim = NULL, too.far = 0.1,                  shade = FALSE, shade.col = "gray80", shift = 0, trans                  = I, by.resids = FALSE, scheme = 0, ...)   Argument names in docs not in code:     se1.mult se2.mult shade   Mismatches in argument names (first 3):     Position: 5 Code: partial.resids Docs: se1.mult     Position: 6 Code: rug Docs: se2.mult     Position: 7 Code: se Docs: partial.resids
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [11s/13s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [75s/86s] OK   Running ‘testthat.R’ [74s/86s]
• checking PDF version of manual ... [10s/12s] OK
• checking HTML version of manual ... [10s/13s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 WARNING