* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘rcontroll’ ... ** package ‘rcontroll’ successfully unpacked and MD5 sums checked ** using staged installation configure: rcontroll: 0.1.0 checking whether we have a suitable tempdir... /tmp checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars -------------------------------------------------- Configuration for rcontroll 0.1.0 gsl-flags: -I/usr/include gsl-libs: -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -------------------------------------------------- ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’ make[1]: Entering directory '/tmp/Rtmp7vhZDh/R.INSTALLd1bcb3fdc565c/rcontroll/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppGSL/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -fpic -g -O2 -Wall -pedantic -mtune=native -c troll_rcpp.cpp -o troll_rcpp.o troll_rcpp.cpp: In function ‘std::string GetParameter(std::string&, std::vector<std::__cxx11::basic_string<char> >&, std::vector<std::__cxx11::basic_string<char> >&)’: troll_rcpp.cpp:1170:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1170 | while(parameter_index < parameter_names.size() && parameter_names[parameter_index] != parameter_name) parameter_index++; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ troll_rcpp.cpp:1172:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::__cxx11::basic_string<char> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 1172 | if(parameter_index < parameter_names.size()) parameter_value = parameter_values[parameter_index]; | ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ troll_rcpp.cpp: In function ‘void OutputCrownSliced(int, int, int, std::vector<float>&)’: troll_rcpp.cpp:3433:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<float>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 3433 | for(int i = 0; i < output_statistics.size();i++){ | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In copy constructor ‘Species::Species(const Species&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Species; _Args = {const Species&}; _Tp = Species]’ at /usr/include/c++/14/bits/new_allocator.h:191:4, inlined from ‘static void std::allocator_traits<std::allocator<_Tp1> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = Species; _Args = {const Species&}; _Tp = Species]’ at /usr/include/c++/14/bits/alloc_traits.h:534:17, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = Species; _Alloc = std::allocator<Species>]’ at /usr/include/c++/14/bits/stl_vector.h:1288:30, inlined from ‘void ReadInputSpecies()’ at troll_rcpp.cpp:4196:16: troll_rcpp.cpp:558:7: warning: ‘species_dummy.Species::s_nbext’ may be used uninitialized [-Wmaybe-uninitialized] 558 | class Species { | ^~~~~~~ troll_rcpp.cpp: In function ‘void ReadInputSpecies()’: troll_rcpp.cpp:4195:13: note: ‘species_dummy’ declared here 4195 | Species species_dummy; // !!!: currently, species at 0 is not initialized, for legacy reasons, maybe to change | ^~~~~~~~~~~~~ g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o rcontroll.so RcppExports.o troll_rcpp.o -Wl,-O1 -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmp7vhZDh/R.INSTALLd1bcb3fdc565c/rcontroll/src' make[1]: Entering directory '/tmp/Rtmp7vhZDh/R.INSTALLd1bcb3fdc565c/rcontroll/src' make[1]: Leaving directory '/tmp/Rtmp7vhZDh/R.INSTALLd1bcb3fdc565c/rcontroll/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-rcontroll/00new/rcontroll/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcontroll)