• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:13:08 UTC
• checking for file ‘rabhit/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘rabhit’ version ‘0.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rabhit’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/15s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [14s/19s] OK Examples with CPU (user + system) or elapsed time > 5s                       user system elapsed plotDeletionsByBinom 3.796 0.076 5.226 plotHaplotype 3.635 0.000 5.042
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [24s/33s] OK   Running ‘testthat.R’ [24s/33s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [81s/109s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp08IKTb’ ‘~/tmp/scratch/Rtmp0gAHKR’   ‘~/tmp/scratch/Rtmp0wsKev’ ‘~/tmp/scratch/Rtmp13coWJ’   ‘~/tmp/scratch/Rtmp1IjBfK’ ‘~/tmp/scratch/Rtmp1lVawE’   ‘~/tmp/scratch/Rtmp1zcrMY’ ‘~/tmp/scratch/Rtmp36Rurv’   ‘~/tmp/scratch/Rtmp3Z3Jnk’ ‘~/tmp/scratch/Rtmp5c3RJo’   ‘~/tmp/scratch/Rtmp5z6MfT’ ‘~/tmp/scratch/Rtmp6WoYbu’   ‘~/tmp/scratch/Rtmp6at1zJ’ ‘~/tmp/scratch/Rtmp8YQFVP’   ‘~/tmp/scratch/Rtmp8ocsT1’ ‘~/tmp/scratch/Rtmp9mO02C’   ‘~/tmp/scratch/Rtmp9mSMlp’ ‘~/tmp/scratch/RtmpA13bV5’   ‘~/tmp/scratch/RtmpA5X17v’ ‘~/tmp/scratch/RtmpAAH7l6’   ‘~/tmp/scratch/RtmpAG05qX’ ‘~/tmp/scratch/RtmpAjGCpl’   ‘~/tmp/scratch/RtmpAoJTpu’ ‘~/tmp/scratch/RtmpBWLyWg’   ‘~/tmp/scratch/RtmpBqUECq’ ‘~/tmp/scratch/RtmpCR6Hx7’   ‘~/tmp/scratch/RtmpCSiUKI’ ‘~/tmp/scratch/RtmpCxS7Yj’   ‘~/tmp/scratch/RtmpDHhQjR’ ‘~/tmp/scratch/RtmpDrRMkC’   ‘~/tmp/scratch/RtmpDxM1xi’ ‘~/tmp/scratch/RtmpEBKHX4’   ‘~/tmp/scratch/RtmpEM8fXT’ ‘~/tmp/scratch/RtmpFSwNzH’   ‘~/tmp/scratch/RtmpFckRa6’ ‘~/tmp/scratch/RtmpFiAZ3c’   ‘~/tmp/scratch/RtmpFzoa82’ ‘~/tmp/scratch/RtmpH35HaZ’   ‘~/tmp/scratch/RtmpHandrV’ ‘~/tmp/scratch/RtmpHeZtI5’   ‘~/tmp/scratch/RtmpHtWwo0’ ‘~/tmp/scratch/RtmpI4EhZI’   ‘~/tmp/scratch/RtmpIAEUQD’ ‘~/tmp/scratch/RtmpIc5llU’   ‘~/tmp/scratch/RtmpL5cbsp’ ‘~/tmp/scratch/RtmpLZTrVz’   ‘~/tmp/scratch/RtmpLkEIxS’ ‘~/tmp/scratch/RtmpMBOZDK’   ‘~/tmp/scratch/RtmpNnumYQ’ ‘~/tmp/scratch/RtmpO0mkvp’   ‘~/tmp/scratch/RtmpOAGZMK’ ‘~/tmp/scratch/RtmpOpBKGE’   ‘~/tmp/scratch/RtmpPclGer’ ‘~/tmp/scratch/RtmpPewZNK’   ‘~/tmp/scratch/RtmpPfa3BV’ ‘~/tmp/scratch/RtmpPo1fVZ’   ‘~/tmp/scratch/RtmpPuDNm8’ ‘~/tmp/scratch/RtmpPvrdyt’   ‘~/tmp/scratch/RtmpPxlpUM’ ‘~/tmp/scratch/RtmpRAsKVW’   ‘~/tmp/scratch/RtmpRO4kdh’ ‘~/tmp/scratch/RtmpS5NZx3’   ‘~/tmp/scratch/RtmpS7EtPc’ ‘~/tmp/scratch/RtmpSawoMj’   ‘~/tmp/scratch/RtmpSj36J8’ ‘~/tmp/scratch/RtmpSyTZqU’   ‘~/tmp/scratch/RtmpSzlW8K’ ‘~/tmp/scratch/RtmpT4UdDR’   ‘~/tmp/scratch/RtmpTnDzUQ’ ‘~/tmp/scratch/RtmpU21zk9’   ‘~/tmp/scratch/RtmpUJoCVD’ ‘~/tmp/scratch/RtmpUSazNW’   ‘~/tmp/scratch/RtmpUqZzMu’ ‘~/tmp/scratch/RtmpVBlyPH’   ‘~/tmp/scratch/RtmpVtyQ2M’ ‘~/tmp/scratch/RtmpW0yECL’   ‘~/tmp/scratch/RtmpW3QAFU’ ‘~/tmp/scratch/RtmpW6RqYL’   ‘~/tmp/scratch/RtmpWASUgw’ ‘~/tmp/scratch/RtmpWimhD9’   ‘~/tmp/scratch/RtmpWnBziy’ ‘~/tmp/scratch/RtmpWoGo8d’   ‘~/tmp/scratch/RtmpWptKmY’ ‘~/tmp/scratch/RtmpWt9B2q’   ‘~/tmp/scratch/RtmpXTAVl1’ ‘~/tmp/scratch/RtmpXueam5’   ‘~/tmp/scratch/RtmpYbXXCU’ ‘~/tmp/scratch/RtmpYlgrPV’   ‘~/tmp/scratch/RtmpYoH4yz’ ‘~/tmp/scratch/RtmpZ4NuIV’   ‘~/tmp/scratch/RtmpaIYpaC’ ‘~/tmp/scratch/RtmpacSGf9’   ‘~/tmp/scratch/Rtmpacar8O’ ‘~/tmp/scratch/Rtmpawh6fT’   ‘~/tmp/scratch/Rtmpb1NOLF’ ‘~/tmp/scratch/RtmpbmJSeS’   ‘~/tmp/scratch/RtmpbqQULX’ ‘~/tmp/scratch/Rtmpc8IJNi’   ‘~/tmp/scratch/Rtmpc9zHNj’ ‘~/tmp/scratch/RtmpcBm596’   ‘~/tmp/scratch/RtmpcgCVFP’ ‘~/tmp/scratch/RtmpdFxfAq’   ‘~/tmp/scratch/RtmpdkyyyV’ ‘~/tmp/scratch/RtmpdzkVog’   ‘~/tmp/scratch/Rtmpe2p2gN’ ‘~/tmp/scratch/RtmpekgXnU’   ‘~/tmp/scratch/Rtmpet7duu’ ‘~/tmp/scratch/RtmpfJUigl’   ‘~/tmp/scratch/RtmpfNcrsN’ ‘~/tmp/scratch/RtmpfZ7ELw’   ‘~/tmp/scratch/Rtmpfud0dS’ ‘~/tmp/scratch/Rtmpg5qOqA’   ‘~/tmp/scratch/RtmpgJdE2w’ ‘~/tmp/scratch/RtmpgvyOC4’   ‘~/tmp/scratch/RtmpgzmcZ8’ ‘~/tmp/scratch/RtmphQDGSB’   ‘~/tmp/scratch/RtmphT9YN5’ ‘~/tmp/scratch/RtmphabWjw’   ‘~/tmp/scratch/Rtmphb1dQb’ ‘~/tmp/scratch/Rtmpi7Tj93’   ‘~/tmp/scratch/RtmpjblmSF’ ‘~/tmp/scratch/RtmpjdmBgJ’   ‘~/tmp/scratch/Rtmpkkza4M’ ‘~/tmp/scratch/RtmplHPMsa’   ‘~/tmp/scratch/RtmplUmvSw’ ‘~/tmp/scratch/RtmplhuGOs’   ‘~/tmp/scratch/RtmpmIfsgY’ ‘~/tmp/scratch/RtmpmWMWay’   ‘~/tmp/scratch/RtmpmqyIvW’ ‘~/tmp/scratch/RtmpmvdPFH’   ‘~/tmp/scratch/Rtmpn8BBs7’ ‘~/tmp/scratch/RtmpnY5MmU’   ‘~/tmp/scratch/Rtmpnc9MWG’ ‘~/tmp/scratch/RtmpnhIQ5m’   ‘~/tmp/scratch/RtmpnrD8jP’ ‘~/tmp/scratch/Rtmpo4IMA3’   ‘~/tmp/scratch/RtmpoLDpfw’ ‘~/tmp/scratch/RtmppDcupn’   ‘~/tmp/scratch/RtmppHw92U’ ‘~/tmp/scratch/RtmppcWsYn’   ‘~/tmp/scratch/RtmppwKJGF’ ‘~/tmp/scratch/Rtmpq46ooZ’   ‘~/tmp/scratch/RtmpqoXHnI’ ‘~/tmp/scratch/RtmprK98nD’   ‘~/tmp/scratch/RtmpravS8I’ ‘~/tmp/scratch/RtmpsKSjfg’   ‘~/tmp/scratch/Rtmpssrdrq’ ‘~/tmp/scratch/RtmpttY4vD’   ‘~/tmp/scratch/Rtmpu1VfxQ’ ‘~/tmp/scratch/Rtmpu8Uq7T’   ‘~/tmp/scratch/RtmpuNraZr’ ‘~/tmp/scratch/RtmpuqTViq’   ‘~/tmp/scratch/Rtmpv43cMu’ ‘~/tmp/scratch/RtmpvGUXmB’   ‘~/tmp/scratch/Rtmpw1Gima’ ‘~/tmp/scratch/Rtmpw2Xwec’   ‘~/tmp/scratch/RtmpwEA6zC’ ‘~/tmp/scratch/RtmpwXrMDr’   ‘~/tmp/scratch/Rtmpx3q17p’ ‘~/tmp/scratch/RtmpxSjmTu’   ‘~/tmp/scratch/RtmpxcCdB2’ ‘~/tmp/scratch/RtmpxritkS’   ‘~/tmp/scratch/RtmpyJm3tW’ ‘~/tmp/scratch/RtmpzGA946’   ‘~/tmp/scratch/RtmpzGQAXs’ ‘~/tmp/scratch/RtmpzaZsOI’   ‘~/tmp/scratch/xvfb-run.13r9S7’ ‘~/tmp/scratch/xvfb-run.18iECH’   ‘~/tmp/scratch/xvfb-run.1apNx4’ ‘~/tmp/scratch/xvfb-run.3n2jr5’   ‘~/tmp/scratch/xvfb-run.3naZXA’ ‘~/tmp/scratch/xvfb-run.3yWGKH’   ‘~/tmp/scratch/xvfb-run.46JEvC’ ‘~/tmp/scratch/xvfb-run.48DYuv’   ‘~/tmp/scratch/xvfb-run.4YpOV7’ ‘~/tmp/scratch/xvfb-run.6Fh5Jg’   ‘~/tmp/scratch/xvfb-run.6O3638’ ‘~/tmp/scratch/xvfb-run.6QrER8’   ‘~/tmp/scratch/xvfb-run.6gWQsp’ ‘~/tmp/scratch/xvfb-run.6hnYIY’   ‘~/tmp/scratch/xvfb-run.A4yWej’ ‘~/tmp/scratch/xvfb-run.ANOUSz’   ‘~/tmp/scratch/xvfb-run.ARClpZ’ ‘~/tmp/scratch/xvfb-run.BZ7T4K’   ‘~/tmp/scratch/xvfb-run.BjusI3’ ‘~/tmp/scratch/xvfb-run.Cbhbj3’   ‘~/tmp/scratch/xvfb-run.Cp6zRy’ ‘~/tmp/scratch/xvfb-run.D79AT2’   ‘~/tmp/scratch/xvfb-run.DKHrHL’ ‘~/tmp/scratch/xvfb-run.Dl2IKK’   ‘~/tmp/scratch/xvfb-run.FhPwbF’ ‘~/tmp/scratch/xvfb-run.GKOykq’   ‘~/tmp/scratch/xvfb-run.Hasi9C’ ‘~/tmp/scratch/xvfb-run.Ivopli’   ‘~/tmp/scratch/xvfb-run.JuSARq’ ‘~/tmp/scratch/xvfb-run.Lj9zv2’   ‘~/tmp/scratch/xvfb-run.Lz3X0z’ ‘~/tmp/scratch/xvfb-run.NZJa0L’   ‘~/tmp/scratch/xvfb-run.NvIxgF’ ‘~/tmp/scratch/xvfb-run.OFSmJt’   ‘~/tmp/scratch/xvfb-run.PQiY14’ ‘~/tmp/scratch/xvfb-run.RMqS9d’   ‘~/tmp/scratch/xvfb-run.RSG0rR’ ‘~/tmp/scratch/xvfb-run.RZN1Hz’   ‘~/tmp/scratch/xvfb-run.SQlp0B’ ‘~/tmp/scratch/xvfb-run.SR6jEl’   ‘~/tmp/scratch/xvfb-run.TFIm6e’ ‘~/tmp/scratch/xvfb-run.TuaZ78’   ‘~/tmp/scratch/xvfb-run.UBOEFt’ ‘~/tmp/scratch/xvfb-run.UGdwqR’   ‘~/tmp/scratch/xvfb-run.Unzo9V’ ‘~/tmp/scratch/xvfb-run.VIuRGg’   ‘~/tmp/scratch/xvfb-run.VYs3Iw’ ‘~/tmp/scratch/xvfb-run.YgYfhV’   ‘~/tmp/scratch/xvfb-run.ZCjRmP’ ‘~/tmp/scratch/xvfb-run.aXYkRb’   ‘~/tmp/scratch/xvfb-run.ajrrOO’ ‘~/tmp/scratch/xvfb-run.b8ee6j’   ‘~/tmp/scratch/xvfb-run.bK1wdL’ ‘~/tmp/scratch/xvfb-run.by3156’   ‘~/tmp/scratch/xvfb-run.dtvtGl’ ‘~/tmp/scratch/xvfb-run.epNFre’   ‘~/tmp/scratch/xvfb-run.frFWTT’ ‘~/tmp/scratch/xvfb-run.ftpJSM’   ‘~/tmp/scratch/xvfb-run.ifKwqi’ ‘~/tmp/scratch/xvfb-run.ipFeZa’   ‘~/tmp/scratch/xvfb-run.kRsBA5’ ‘~/tmp/scratch/xvfb-run.kfAYwZ’   ‘~/tmp/scratch/xvfb-run.oP3PLT’ ‘~/tmp/scratch/xvfb-run.qAWRy8’   ‘~/tmp/scratch/xvfb-run.r0EBXP’ ‘~/tmp/scratch/xvfb-run.rDtrQN’   ‘~/tmp/scratch/xvfb-run.rIxLdi’ ‘~/tmp/scratch/xvfb-run.s3w54R’   ‘~/tmp/scratch/xvfb-run.sTuBxu’ ‘~/tmp/scratch/xvfb-run.tNKntn’   ‘~/tmp/scratch/xvfb-run.tVsBi1’ ‘~/tmp/scratch/xvfb-run.u4ekLx’   ‘~/tmp/scratch/xvfb-run.wb4Py0’ ‘~/tmp/scratch/xvfb-run.woykfL’   ‘~/tmp/scratch/xvfb-run.x6Bc3h’ ‘~/tmp/scratch/xvfb-run.xcoiWG’   ‘~/tmp/scratch/xvfb-run.zVw43z’ ‘~/tmp/scratch/xvfb-run.zulCSU’
• DONE

Status: 1 NOTE