• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:12:48 UTC
• checking for file ‘rNeighborGWAS/DESCRIPTION’ ... OK
• this is package ‘rNeighborGWAS’ version ‘1.2.5’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘rNeighborGWAS’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/11s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [48s/55s] OK   Running ‘testthat.R’ [48s/55s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [16s/18s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0NoYY6’ ‘~/tmp/scratch/Rtmp0OQtbd’   ‘~/tmp/scratch/Rtmp12eInU’ ‘~/tmp/scratch/Rtmp1I0cLZ’   ‘~/tmp/scratch/Rtmp1oY9N3’ ‘~/tmp/scratch/Rtmp2Qfx64’   ‘~/tmp/scratch/Rtmp2oqKAo’ ‘~/tmp/scratch/Rtmp3QFzwp’   ‘~/tmp/scratch/Rtmp3wx4px’ ‘~/tmp/scratch/Rtmp4KjnPi’   ‘~/tmp/scratch/Rtmp4Ve20w’ ‘~/tmp/scratch/Rtmp4glQgo’   ‘~/tmp/scratch/Rtmp4l9aPm’ ‘~/tmp/scratch/Rtmp4sPNSH’   ‘~/tmp/scratch/Rtmp5m86K1’ ‘~/tmp/scratch/Rtmp69P1qK’   ‘~/tmp/scratch/Rtmp7CrI0H’ ‘~/tmp/scratch/Rtmp7I1b2s’   ‘~/tmp/scratch/Rtmp7Nd290’ ‘~/tmp/scratch/Rtmp7tk7da’   ‘~/tmp/scratch/Rtmp8SgPLa’ ‘~/tmp/scratch/Rtmp8q3EjV’   ‘~/tmp/scratch/Rtmp8qicgq’ ‘~/tmp/scratch/Rtmp8w2TMV’   ‘~/tmp/scratch/Rtmp8wcjmH’ ‘~/tmp/scratch/Rtmp9cNfAH’   ‘~/tmp/scratch/RtmpA008PQ’ ‘~/tmp/scratch/RtmpA1Eusw’   ‘~/tmp/scratch/RtmpAVH0xk’ ‘~/tmp/scratch/RtmpAou1Et’   ‘~/tmp/scratch/RtmpCApCr3’ ‘~/tmp/scratch/RtmpCdnRgy’   ‘~/tmp/scratch/RtmpCo2QaB’ ‘~/tmp/scratch/RtmpDjjlhq’   ‘~/tmp/scratch/RtmpEbrHSb’ ‘~/tmp/scratch/RtmpF5g8Od’   ‘~/tmp/scratch/RtmpFA2SaJ’ ‘~/tmp/scratch/RtmpFLjFX6’   ‘~/tmp/scratch/RtmpFnq2SE’ ‘~/tmp/scratch/RtmpFreT7L’   ‘~/tmp/scratch/RtmpGtPV3e’ ‘~/tmp/scratch/RtmpGvUEdH’   ‘~/tmp/scratch/RtmpGyVS7o’ ‘~/tmp/scratch/RtmpH5SW52’   ‘~/tmp/scratch/RtmpHHVj1x’ ‘~/tmp/scratch/RtmpHOE1Mg’   ‘~/tmp/scratch/RtmpHTXcPo’ ‘~/tmp/scratch/RtmpHbhdyr’   ‘~/tmp/scratch/RtmpHm1koR’ ‘~/tmp/scratch/RtmpITC5Sy’   ‘~/tmp/scratch/RtmpJ3DbFH’ ‘~/tmp/scratch/RtmpJbMX3t’   ‘~/tmp/scratch/RtmpJqu5JM’ ‘~/tmp/scratch/RtmpKX9pIS’   ‘~/tmp/scratch/RtmpLZvhtn’ ‘~/tmp/scratch/RtmpLhShgB’   ‘~/tmp/scratch/RtmpMR1LGq’ ‘~/tmp/scratch/RtmpMtJLmZ’   ‘~/tmp/scratch/RtmpMxsky4’ ‘~/tmp/scratch/RtmpMzOams’   ‘~/tmp/scratch/RtmpN2TngM’ ‘~/tmp/scratch/RtmpNFJk5c’   ‘~/tmp/scratch/RtmpNw2SwW’ ‘~/tmp/scratch/RtmpOjgaOZ’   ‘~/tmp/scratch/RtmpOrvFDC’ ‘~/tmp/scratch/RtmpOzhFbt’   ‘~/tmp/scratch/RtmpPrRxV2’ ‘~/tmp/scratch/RtmpPrpetK’   ‘~/tmp/scratch/RtmpPy0AjF’ ‘~/tmp/scratch/RtmpQ3QB0e’   ‘~/tmp/scratch/RtmpQ7v4md’ ‘~/tmp/scratch/RtmpQBRyz9’   ‘~/tmp/scratch/RtmpQmaaKn’ ‘~/tmp/scratch/RtmpR5gKXc’   ‘~/tmp/scratch/RtmpRfBWKF’ ‘~/tmp/scratch/RtmpSO7tF2’   ‘~/tmp/scratch/RtmpStQaPJ’ ‘~/tmp/scratch/RtmpTUkyr1’   ‘~/tmp/scratch/RtmpUCTNuA’ ‘~/tmp/scratch/RtmpUPu8Mq’   ‘~/tmp/scratch/RtmpUT9qT6’ ‘~/tmp/scratch/RtmpUhVFNE’   ‘~/tmp/scratch/RtmpVOqacs’ ‘~/tmp/scratch/RtmpWBrxxl’   ‘~/tmp/scratch/RtmpWk1zfY’ ‘~/tmp/scratch/RtmpWwoYpF’   ‘~/tmp/scratch/RtmpWxbuwZ’ ‘~/tmp/scratch/RtmpZGjUw5’   ‘~/tmp/scratch/RtmpZHbXpH’ ‘~/tmp/scratch/RtmpaGew59’   ‘~/tmp/scratch/RtmpaZbDcZ’ ‘~/tmp/scratch/RtmpaZioRz’   ‘~/tmp/scratch/RtmpafoLhv’ ‘~/tmp/scratch/RtmpbZVgVD’   ‘~/tmp/scratch/RtmpdazzoO’ ‘~/tmp/scratch/RtmpdeT9oj’   ‘~/tmp/scratch/RtmpeBiASH’ ‘~/tmp/scratch/RtmpeNEmmO’   ‘~/tmp/scratch/RtmpeUPOOL’ ‘~/tmp/scratch/Rtmpee2XLa’   ‘~/tmp/scratch/Rtmpeh9jOM’ ‘~/tmp/scratch/RtmpfWn3F7’   ‘~/tmp/scratch/Rtmpg3LzcH’ ‘~/tmp/scratch/RtmpgDGoPt’   ‘~/tmp/scratch/RtmpgEe76p’ ‘~/tmp/scratch/RtmphQCwiE’   ‘~/tmp/scratch/RtmphyQINq’ ‘~/tmp/scratch/RtmpiLYRQo’   ‘~/tmp/scratch/RtmpiQDYaO’ ‘~/tmp/scratch/RtmpidbwxN’   ‘~/tmp/scratch/RtmpieEPZA’ ‘~/tmp/scratch/Rtmpj1m6GR’   ‘~/tmp/scratch/RtmpjvqIdw’ ‘~/tmp/scratch/RtmpkDxhx9’   ‘~/tmp/scratch/RtmpkGW77x’ ‘~/tmp/scratch/RtmpkGtA5o’   ‘~/tmp/scratch/RtmplEeWGn’ ‘~/tmp/scratch/RtmplMFCaM’   ‘~/tmp/scratch/Rtmplnv5kP’ ‘~/tmp/scratch/Rtmpm0RTBx’   ‘~/tmp/scratch/Rtmpm8RUiT’ ‘~/tmp/scratch/RtmpmFO2Wi’   ‘~/tmp/scratch/RtmpmtJrOb’ ‘~/tmp/scratch/RtmpmuymcK’   ‘~/tmp/scratch/RtmpncaVse’ ‘~/tmp/scratch/RtmpoG8DyO’   ‘~/tmp/scratch/RtmpoXcDbs’ ‘~/tmp/scratch/RtmpoaYPu5’   ‘~/tmp/scratch/RtmppfECgN’ ‘~/tmp/scratch/Rtmppldgaa’   ‘~/tmp/scratch/RtmpqbaOfP’ ‘~/tmp/scratch/RtmpqsQp36’   ‘~/tmp/scratch/RtmprGsb5j’ ‘~/tmp/scratch/RtmprNcBEs’   ‘~/tmp/scratch/Rtmpratqvp’ ‘~/tmp/scratch/Rtmps0lMar’   ‘~/tmp/scratch/RtmpsAu1dV’ ‘~/tmp/scratch/RtmpswKAdX’   ‘~/tmp/scratch/RtmptIFJJD’ ‘~/tmp/scratch/RtmptQwxyS’   ‘~/tmp/scratch/RtmptoY3sY’ ‘~/tmp/scratch/Rtmpu8CEAV’   ‘~/tmp/scratch/RtmpuC91Fy’ ‘~/tmp/scratch/RtmpuSGrno’   ‘~/tmp/scratch/Rtmpvd4MJg’ ‘~/tmp/scratch/RtmpvkH6By’   ‘~/tmp/scratch/Rtmpvy4iuy’ ‘~/tmp/scratch/RtmpwekXvD’   ‘~/tmp/scratch/RtmpxeuBis’ ‘~/tmp/scratch/Rtmpycsvmd’   ‘~/tmp/scratch/RtmpzB0V1q’ ‘~/tmp/scratch/RtmpzVpe8j’   ‘~/tmp/scratch/ccNuUOVQ.s’ ‘~/tmp/scratch/xvfb-run.07NUDB’   ‘~/tmp/scratch/xvfb-run.082dwe’ ‘~/tmp/scratch/xvfb-run.0W2BDu’   ‘~/tmp/scratch/xvfb-run.1RqfiZ’ ‘~/tmp/scratch/xvfb-run.2cyXiU’   ‘~/tmp/scratch/xvfb-run.3LXXCC’ ‘~/tmp/scratch/xvfb-run.4cVaRI’   ‘~/tmp/scratch/xvfb-run.5kElT4’ ‘~/tmp/scratch/xvfb-run.67bbHX’   ‘~/tmp/scratch/xvfb-run.7F0aXb’ ‘~/tmp/scratch/xvfb-run.7dri4r’   ‘~/tmp/scratch/xvfb-run.8fbdf0’ ‘~/tmp/scratch/xvfb-run.8idpJh’   ‘~/tmp/scratch/xvfb-run.8uxumO’ ‘~/tmp/scratch/xvfb-run.9mhpx9’   ‘~/tmp/scratch/xvfb-run.AnZUwi’ ‘~/tmp/scratch/xvfb-run.C80LU0’   ‘~/tmp/scratch/xvfb-run.CIfibH’ ‘~/tmp/scratch/xvfb-run.CjdR9K’   ‘~/tmp/scratch/xvfb-run.EOCrjd’ ‘~/tmp/scratch/xvfb-run.EnXxmT’   ‘~/tmp/scratch/xvfb-run.EnvixG’ ‘~/tmp/scratch/xvfb-run.FEKyI2’   ‘~/tmp/scratch/xvfb-run.FPe5HJ’ ‘~/tmp/scratch/xvfb-run.GJh0lt’   ‘~/tmp/scratch/xvfb-run.GPxBMB’ ‘~/tmp/scratch/xvfb-run.GTaRBv’   ‘~/tmp/scratch/xvfb-run.HH3PQQ’ ‘~/tmp/scratch/xvfb-run.Hoa811’   ‘~/tmp/scratch/xvfb-run.I2YPRC’ ‘~/tmp/scratch/xvfb-run.IR358y’   ‘~/tmp/scratch/xvfb-run.JUwMlP’ ‘~/tmp/scratch/xvfb-run.MZQ2aw’   ‘~/tmp/scratch/xvfb-run.MZXXYs’ ‘~/tmp/scratch/xvfb-run.NZ0YoS’   ‘~/tmp/scratch/xvfb-run.OTXAHj’ ‘~/tmp/scratch/xvfb-run.Ortn8A’   ‘~/tmp/scratch/xvfb-run.PmToPR’ ‘~/tmp/scratch/xvfb-run.PzHzLF’   ‘~/tmp/scratch/xvfb-run.Q7NsdY’ ‘~/tmp/scratch/xvfb-run.R2ah6O’   ‘~/tmp/scratch/xvfb-run.RGJG1n’ ‘~/tmp/scratch/xvfb-run.RTmOti’   ‘~/tmp/scratch/xvfb-run.Ua0rX0’ ‘~/tmp/scratch/xvfb-run.UcDXfY’   ‘~/tmp/scratch/xvfb-run.Z9fMEB’ ‘~/tmp/scratch/xvfb-run.ZhjMr6’   ‘~/tmp/scratch/xvfb-run.bzCg01’ ‘~/tmp/scratch/xvfb-run.eX5tnX’   ‘~/tmp/scratch/xvfb-run.fXMnA3’ ‘~/tmp/scratch/xvfb-run.fcjmJE’   ‘~/tmp/scratch/xvfb-run.g0jEff’ ‘~/tmp/scratch/xvfb-run.hBenDm’   ‘~/tmp/scratch/xvfb-run.hUzt35’ ‘~/tmp/scratch/xvfb-run.kA7Lrv’   ‘~/tmp/scratch/xvfb-run.lsiG0w’ ‘~/tmp/scratch/xvfb-run.luGX1A’   ‘~/tmp/scratch/xvfb-run.nQLmmR’ ‘~/tmp/scratch/xvfb-run.nTY9Xy’   ‘~/tmp/scratch/xvfb-run.oscZo2’ ‘~/tmp/scratch/xvfb-run.qBaOy0’   ‘~/tmp/scratch/xvfb-run.r3yWIA’ ‘~/tmp/scratch/xvfb-run.rGKNsF’   ‘~/tmp/scratch/xvfb-run.sW6eRI’ ‘~/tmp/scratch/xvfb-run.tmT82M’   ‘~/tmp/scratch/xvfb-run.uFOevY’ ‘~/tmp/scratch/xvfb-run.wzBb7T’   ‘~/tmp/scratch/xvfb-run.xhv8rY’ ‘~/tmp/scratch/xvfb-run.yVXwe5’   ‘~/tmp/scratch/xvfb-run.zBWH5a’
• DONE

Status: 1 NOTE