• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:11:05 UTC
• checking for file ‘r3dmol/DESCRIPTION’ ... OK
• this is package ‘r3dmol’ version ‘0.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘r3dmol’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/8s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] OK   Running ‘testthat.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/15s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp00Y7CB’ ‘~/tmp/scratch/Rtmp0PeLXK’   ‘~/tmp/scratch/Rtmp0tHvhw’ ‘~/tmp/scratch/Rtmp15gm6k’   ‘~/tmp/scratch/Rtmp1PEiGg’ ‘~/tmp/scratch/Rtmp1ulwdr’   ‘~/tmp/scratch/Rtmp20fMQU’ ‘~/tmp/scratch/Rtmp2KfIry’   ‘~/tmp/scratch/Rtmp2ZDNeF’ ‘~/tmp/scratch/Rtmp2t3dT2’   ‘~/tmp/scratch/Rtmp33BScf’ ‘~/tmp/scratch/Rtmp3SiA8M’   ‘~/tmp/scratch/Rtmp3SrcqR’ ‘~/tmp/scratch/Rtmp3WNmIS’   ‘~/tmp/scratch/Rtmp3eTQFc’ ‘~/tmp/scratch/Rtmp51ZGwV’   ‘~/tmp/scratch/Rtmp52vRJj’ ‘~/tmp/scratch/Rtmp65i0Hq’   ‘~/tmp/scratch/Rtmp690XQE’ ‘~/tmp/scratch/Rtmp6cMmC2’   ‘~/tmp/scratch/Rtmp7e1kVD’ ‘~/tmp/scratch/Rtmp8gdB9b’   ‘~/tmp/scratch/Rtmp97BiQr’ ‘~/tmp/scratch/Rtmp9H0FMM’   ‘~/tmp/scratch/Rtmp9Jf7bg’ ‘~/tmp/scratch/Rtmp9tqIYn’   ‘~/tmp/scratch/RtmpA5nXla’ ‘~/tmp/scratch/RtmpA6npdr’   ‘~/tmp/scratch/RtmpAiw2jW’ ‘~/tmp/scratch/RtmpB5W4R5’   ‘~/tmp/scratch/RtmpB7HD8f’ ‘~/tmp/scratch/RtmpBUVg81’   ‘~/tmp/scratch/RtmpBnCDRJ’ ‘~/tmp/scratch/RtmpCDohdg’   ‘~/tmp/scratch/RtmpCEaibC’ ‘~/tmp/scratch/RtmpCcjqGO’   ‘~/tmp/scratch/RtmpCs1Gts’ ‘~/tmp/scratch/RtmpDSUJQS’   ‘~/tmp/scratch/RtmpDlDZYS’ ‘~/tmp/scratch/RtmpEJGaHv’   ‘~/tmp/scratch/RtmpEkDtqR’ ‘~/tmp/scratch/RtmpGqAD9W’   ‘~/tmp/scratch/RtmpGyGfpj’ ‘~/tmp/scratch/RtmpHs9HSq’   ‘~/tmp/scratch/RtmpI85lZg’ ‘~/tmp/scratch/RtmpJUSZBr’   ‘~/tmp/scratch/RtmpJyRY1P’ ‘~/tmp/scratch/RtmpK0esL8’   ‘~/tmp/scratch/RtmpKXFH8L’ ‘~/tmp/scratch/RtmpMABfN3’   ‘~/tmp/scratch/RtmpNRo0C6’ ‘~/tmp/scratch/RtmpOAUjds’   ‘~/tmp/scratch/RtmpP26Nv9’ ‘~/tmp/scratch/RtmpP8p1MN’   ‘~/tmp/scratch/RtmpPElHaT’ ‘~/tmp/scratch/RtmpPFLAAA’   ‘~/tmp/scratch/RtmpPSqDDY’ ‘~/tmp/scratch/RtmpQEIKbU’   ‘~/tmp/scratch/RtmpQRcUqv’ ‘~/tmp/scratch/RtmpR6PoMd’   ‘~/tmp/scratch/RtmpRP50zA’ ‘~/tmp/scratch/RtmpRbq3eY’   ‘~/tmp/scratch/RtmpRhN0rc’ ‘~/tmp/scratch/RtmpSCXty0’   ‘~/tmp/scratch/RtmpSYjLFg’ ‘~/tmp/scratch/RtmpSsm3vU’   ‘~/tmp/scratch/RtmpT8ALUx’ ‘~/tmp/scratch/RtmpTAptqW’   ‘~/tmp/scratch/RtmpUZnnVF’ ‘~/tmp/scratch/RtmpVbo0rR’   ‘~/tmp/scratch/RtmpVc4BvG’ ‘~/tmp/scratch/RtmpVomE2E’   ‘~/tmp/scratch/RtmpVq4bdJ’ ‘~/tmp/scratch/RtmpXSZrDv’   ‘~/tmp/scratch/RtmpXcIHfo’ ‘~/tmp/scratch/RtmpXuk2HP’   ‘~/tmp/scratch/RtmpYFgUCo’ ‘~/tmp/scratch/RtmpYSV0Fu’   ‘~/tmp/scratch/RtmpYTBwEd’ ‘~/tmp/scratch/RtmpZ4PpJV’   ‘~/tmp/scratch/RtmpZ9FXPj’ ‘~/tmp/scratch/RtmpZW45cf’   ‘~/tmp/scratch/RtmpapSumV’ ‘~/tmp/scratch/RtmpbwGfri’   ‘~/tmp/scratch/Rtmpc0oDgo’ ‘~/tmp/scratch/RtmpdUfjkq’   ‘~/tmp/scratch/Rtmpe5VdhX’ ‘~/tmp/scratch/RtmpfFNrrw’   ‘~/tmp/scratch/RtmpfMqKFZ’ ‘~/tmp/scratch/Rtmpfqn7fn’   ‘~/tmp/scratch/RtmpftHTPC’ ‘~/tmp/scratch/RtmpfvCZWt’   ‘~/tmp/scratch/RtmpgCNvcv’ ‘~/tmp/scratch/RtmpgMGmEo’   ‘~/tmp/scratch/RtmpglgFYV’ ‘~/tmp/scratch/Rtmpi3CXRx’   ‘~/tmp/scratch/RtmpiAX0gC’ ‘~/tmp/scratch/RtmpiS91rg’   ‘~/tmp/scratch/Rtmpj7kvt2’ ‘~/tmp/scratch/RtmpjHWpVD’   ‘~/tmp/scratch/RtmpjRIACX’ ‘~/tmp/scratch/RtmpjgcEEX’   ‘~/tmp/scratch/RtmpkMTEa2’ ‘~/tmp/scratch/RtmpkY0BzP’   ‘~/tmp/scratch/RtmplpTVtT’ ‘~/tmp/scratch/Rtmpm4IEII’   ‘~/tmp/scratch/RtmpnBaXeO’ ‘~/tmp/scratch/RtmpnRzQlk’   ‘~/tmp/scratch/RtmpngussG’ ‘~/tmp/scratch/RtmpoNDwZ3’   ‘~/tmp/scratch/RtmpoxthlL’ ‘~/tmp/scratch/RtmpqSL6kL’   ‘~/tmp/scratch/Rtmpr6qqLV’ ‘~/tmp/scratch/RtmpriPbdK’   ‘~/tmp/scratch/RtmpsAZK9r’ ‘~/tmp/scratch/RtmpspA2Ow’   ‘~/tmp/scratch/RtmpsxhDVj’ ‘~/tmp/scratch/Rtmpsy69Um’   ‘~/tmp/scratch/RtmptfKGyH’ ‘~/tmp/scratch/RtmptgCBYd’   ‘~/tmp/scratch/RtmpvUypa6’ ‘~/tmp/scratch/RtmpvX6KLm’   ‘~/tmp/scratch/Rtmpvacgpq’ ‘~/tmp/scratch/Rtmpvav8BA’   ‘~/tmp/scratch/Rtmpvp9Go5’ ‘~/tmp/scratch/Rtmpw0dqeF’   ‘~/tmp/scratch/RtmpwJ0Mlq’ ‘~/tmp/scratch/RtmpwOxjTZ’   ‘~/tmp/scratch/RtmpwP6EBc’ ‘~/tmp/scratch/Rtmpwcubjy’   ‘~/tmp/scratch/RtmpyFpSjT’ ‘~/tmp/scratch/Rtmpyp8Ui4’   ‘~/tmp/scratch/Rtmpz8f5IU’ ‘~/tmp/scratch/arEuIWpF’   ‘~/tmp/scratch/ccbLAETo.s’   ‘~/tmp/scratch/quarto-session1e18741e5c3c1e29’   ‘~/tmp/scratch/quarto-sessiondd4da524da8eaae8’   ‘~/tmp/scratch/xvfb-run.0o6WoQ’ ‘~/tmp/scratch/xvfb-run.0zzglB’   ‘~/tmp/scratch/xvfb-run.192eQ1’ ‘~/tmp/scratch/xvfb-run.1O9ooI’   ‘~/tmp/scratch/xvfb-run.1uHroa’ ‘~/tmp/scratch/xvfb-run.30S60K’   ‘~/tmp/scratch/xvfb-run.3G2mad’ ‘~/tmp/scratch/xvfb-run.4PD09c’   ‘~/tmp/scratch/xvfb-run.5LoTNu’ ‘~/tmp/scratch/xvfb-run.5mOjcF’   ‘~/tmp/scratch/xvfb-run.7B7pc3’ ‘~/tmp/scratch/xvfb-run.7dFpLB’   ‘~/tmp/scratch/xvfb-run.9SkOsd’ ‘~/tmp/scratch/xvfb-run.AiFizS’   ‘~/tmp/scratch/xvfb-run.B0jDfN’ ‘~/tmp/scratch/xvfb-run.Dybocn’   ‘~/tmp/scratch/xvfb-run.FhOKtW’ ‘~/tmp/scratch/xvfb-run.G03yIM’   ‘~/tmp/scratch/xvfb-run.HsAR23’ ‘~/tmp/scratch/xvfb-run.IJJzCk’   ‘~/tmp/scratch/xvfb-run.PaTANy’ ‘~/tmp/scratch/xvfb-run.QYWybr’   ‘~/tmp/scratch/xvfb-run.QqujZ2’ ‘~/tmp/scratch/xvfb-run.QwFmRf’   ‘~/tmp/scratch/xvfb-run.TIcrPe’ ‘~/tmp/scratch/xvfb-run.TqyQW2’   ‘~/tmp/scratch/xvfb-run.V1Fl47’ ‘~/tmp/scratch/xvfb-run.Va9G03’   ‘~/tmp/scratch/xvfb-run.WG4z3g’ ‘~/tmp/scratch/xvfb-run.WWQIvr’   ‘~/tmp/scratch/xvfb-run.XYcnYc’ ‘~/tmp/scratch/xvfb-run.XgjtWB’   ‘~/tmp/scratch/xvfb-run.YNXzBf’ ‘~/tmp/scratch/xvfb-run.aSwoGM’   ‘~/tmp/scratch/xvfb-run.agtlO5’ ‘~/tmp/scratch/xvfb-run.cdXZYa’   ‘~/tmp/scratch/xvfb-run.eqk14y’ ‘~/tmp/scratch/xvfb-run.gWeNdj’   ‘~/tmp/scratch/xvfb-run.hylqZr’ ‘~/tmp/scratch/xvfb-run.i69WB1’   ‘~/tmp/scratch/xvfb-run.iKDaXB’ ‘~/tmp/scratch/xvfb-run.jympr6’   ‘~/tmp/scratch/xvfb-run.jzh3PV’ ‘~/tmp/scratch/xvfb-run.k6tnCn’   ‘~/tmp/scratch/xvfb-run.kWVAc6’ ‘~/tmp/scratch/xvfb-run.mKXLgF’   ‘~/tmp/scratch/xvfb-run.oQ8cbv’ ‘~/tmp/scratch/xvfb-run.pc8gTw’   ‘~/tmp/scratch/xvfb-run.rbGwH5’ ‘~/tmp/scratch/xvfb-run.rr1V77’   ‘~/tmp/scratch/xvfb-run.ufhBms’ ‘~/tmp/scratch/xvfb-run.wOuZEh’   ‘~/tmp/scratch/xvfb-run.yK0zLq’
• DONE

Status: 1 NOTE