• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:11:32 UTC
• checking for file ‘r3dmol/DESCRIPTION’ ... OK
• this is package ‘r3dmol’ version ‘0.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘r3dmol’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/9s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] OK   Running ‘testthat.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/15s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp08YbRV’ ‘~/tmp/scratch/Rtmp0B280w’   ‘~/tmp/scratch/Rtmp0CqRgy’ ‘~/tmp/scratch/Rtmp0ETgTj’   ‘~/tmp/scratch/Rtmp14bFNl’ ‘~/tmp/scratch/Rtmp1WOacr’   ‘~/tmp/scratch/Rtmp1m1mr3’ ‘~/tmp/scratch/Rtmp2XeJtg’   ‘~/tmp/scratch/Rtmp3AhOMj’ ‘~/tmp/scratch/Rtmp3ROoRY’   ‘~/tmp/scratch/Rtmp46DyxI’ ‘~/tmp/scratch/Rtmp4UxST6’   ‘~/tmp/scratch/Rtmp4cvD74’ ‘~/tmp/scratch/Rtmp6bjWKE’   ‘~/tmp/scratch/Rtmp76AZ64’ ‘~/tmp/scratch/Rtmp7MOIQI’   ‘~/tmp/scratch/Rtmp7oJP0i’ ‘~/tmp/scratch/Rtmp7uMw3U’   ‘~/tmp/scratch/Rtmp8G2lSH’ ‘~/tmp/scratch/Rtmp8PLjOl’   ‘~/tmp/scratch/Rtmp8zRsYd’ ‘~/tmp/scratch/Rtmp9NR4zu’   ‘~/tmp/scratch/Rtmp9QapkO’ ‘~/tmp/scratch/RtmpAHo99n’   ‘~/tmp/scratch/RtmpAZfWtX’ ‘~/tmp/scratch/RtmpAeAKmp’   ‘~/tmp/scratch/RtmpAzwRqN’ ‘~/tmp/scratch/RtmpB4bR4s’   ‘~/tmp/scratch/RtmpBL3Hdo’ ‘~/tmp/scratch/RtmpBSJY50’   ‘~/tmp/scratch/RtmpBr3Z2b’ ‘~/tmp/scratch/RtmpC9qNe2’   ‘~/tmp/scratch/RtmpCNk0Ht’ ‘~/tmp/scratch/RtmpCOFB9Q’   ‘~/tmp/scratch/RtmpCqDRhS’ ‘~/tmp/scratch/RtmpDO4QLl’   ‘~/tmp/scratch/RtmpDQzEWg’ ‘~/tmp/scratch/RtmpDT9SWK’   ‘~/tmp/scratch/RtmpEW9RQp’ ‘~/tmp/scratch/RtmpEwD7WQ’   ‘~/tmp/scratch/RtmpFVvkaQ’ ‘~/tmp/scratch/RtmpFkzRl8’   ‘~/tmp/scratch/RtmpGIFuzx’ ‘~/tmp/scratch/RtmpGkStan’   ‘~/tmp/scratch/RtmpGnHFcD’ ‘~/tmp/scratch/RtmpHMMqIV’   ‘~/tmp/scratch/RtmpIggBhD’ ‘~/tmp/scratch/RtmpKrhMM5’   ‘~/tmp/scratch/RtmpKyivNa’ ‘~/tmp/scratch/RtmpLCAzVL’   ‘~/tmp/scratch/RtmpLaTF7u’ ‘~/tmp/scratch/RtmpLnzhx0’   ‘~/tmp/scratch/RtmpLtbdep’ ‘~/tmp/scratch/RtmpLxlGoa’   ‘~/tmp/scratch/RtmpM2dY1l’ ‘~/tmp/scratch/RtmpMhAVCu’   ‘~/tmp/scratch/RtmpMrdZAU’ ‘~/tmp/scratch/RtmpO2GBDE’   ‘~/tmp/scratch/RtmpOgvvRd’ ‘~/tmp/scratch/RtmpOnHOBr’   ‘~/tmp/scratch/RtmpOoJe1e’ ‘~/tmp/scratch/RtmpP9I7DG’   ‘~/tmp/scratch/RtmpPPswVC’ ‘~/tmp/scratch/RtmpQIYFHw’   ‘~/tmp/scratch/RtmpQxJF1e’ ‘~/tmp/scratch/RtmpR8Hw1p’   ‘~/tmp/scratch/RtmpRIgM1r’ ‘~/tmp/scratch/RtmpRtY7sF’   ‘~/tmp/scratch/RtmpS3l4TP’ ‘~/tmp/scratch/RtmpSECOZh’   ‘~/tmp/scratch/RtmpSadtRM’ ‘~/tmp/scratch/RtmpScc56f’   ‘~/tmp/scratch/RtmpSqttsr’ ‘~/tmp/scratch/RtmpT19u5h’   ‘~/tmp/scratch/RtmpTSMZJ1’ ‘~/tmp/scratch/RtmpTdNU32’   ‘~/tmp/scratch/RtmpU0JmuM’ ‘~/tmp/scratch/RtmpUItWpp’   ‘~/tmp/scratch/RtmpUh5QFx’ ‘~/tmp/scratch/RtmpUyzbsk’   ‘~/tmp/scratch/RtmpVP3QFu’ ‘~/tmp/scratch/RtmpWiimgU’   ‘~/tmp/scratch/RtmpWmNhJe’ ‘~/tmp/scratch/RtmpX8g0Jj’   ‘~/tmp/scratch/RtmpXMcbdM’ ‘~/tmp/scratch/RtmpXZKjID’   ‘~/tmp/scratch/RtmpYBdKwH’ ‘~/tmp/scratch/RtmpYlcO2m’   ‘~/tmp/scratch/RtmpYt2ZFG’ ‘~/tmp/scratch/RtmpZWDeY0’   ‘~/tmp/scratch/RtmpZmahr9’ ‘~/tmp/scratch/RtmpZnI2A2’   ‘~/tmp/scratch/RtmpZpXgEm’ ‘~/tmp/scratch/RtmpZsOCf2’   ‘~/tmp/scratch/Rtmpa7PX2w’ ‘~/tmp/scratch/Rtmpa7pjad’   ‘~/tmp/scratch/RtmpaWTA9d’ ‘~/tmp/scratch/RtmpcWpsQg’   ‘~/tmp/scratch/Rtmpd5NLKz’ ‘~/tmp/scratch/RtmpdDoSMI’   ‘~/tmp/scratch/RtmpdKrHNV’ ‘~/tmp/scratch/RtmpediXso’   ‘~/tmp/scratch/Rtmpf5F3Cm’ ‘~/tmp/scratch/RtmpfO1wHu’   ‘~/tmp/scratch/RtmpfUG946’ ‘~/tmp/scratch/RtmphOxUBb’   ‘~/tmp/scratch/RtmphfrNq5’ ‘~/tmp/scratch/Rtmpjlzjut’   ‘~/tmp/scratch/RtmpkNJH8Y’ ‘~/tmp/scratch/RtmpkPoJOF’   ‘~/tmp/scratch/RtmpkXsVKS’ ‘~/tmp/scratch/RtmplR0NzB’   ‘~/tmp/scratch/RtmplTrQRi’ ‘~/tmp/scratch/Rtmplh6u4m’   ‘~/tmp/scratch/RtmpmsmTT4’ ‘~/tmp/scratch/RtmpnYpXyt’   ‘~/tmp/scratch/Rtmpo00jL1’ ‘~/tmp/scratch/Rtmpo1iMl4’   ‘~/tmp/scratch/RtmpoNds8h’ ‘~/tmp/scratch/RtmpofoXKf’   ‘~/tmp/scratch/RtmppLxpZk’ ‘~/tmp/scratch/RtmpplB7kF’   ‘~/tmp/scratch/RtmpqKYIvV’ ‘~/tmp/scratch/RtmprLlSXw’   ‘~/tmp/scratch/RtmprfE0T6’ ‘~/tmp/scratch/RtmptbQ9TB’   ‘~/tmp/scratch/Rtmpthto17’ ‘~/tmp/scratch/RtmptusaEO’   ‘~/tmp/scratch/RtmpuHyZlI’ ‘~/tmp/scratch/RtmpuXJhEa’   ‘~/tmp/scratch/Rtmpv1i0EK’ ‘~/tmp/scratch/RtmpvPYvoy’   ‘~/tmp/scratch/Rtmpvni9DA’ ‘~/tmp/scratch/RtmpvxUvkP’   ‘~/tmp/scratch/RtmpwDB5Cf’ ‘~/tmp/scratch/RtmpwhYtTx’   ‘~/tmp/scratch/RtmpwjS5zC’ ‘~/tmp/scratch/Rtmpy38Gtj’   ‘~/tmp/scratch/Rtmpy5AN5B’ ‘~/tmp/scratch/Rtmpz87XPw’   ‘~/tmp/scratch/RtmpzJnQZW’ ‘~/tmp/scratch/RtmpzTFgY8’   ‘~/tmp/scratch/ccNj2p63.s’   ‘~/tmp/scratch/quarto-session1a9974043ec3ce7c’   ‘~/tmp/scratch/quarto-sessionff764575b81ba5ab’   ‘~/tmp/scratch/xvfb-run.05CcuN’ ‘~/tmp/scratch/xvfb-run.0nxVcs’   ‘~/tmp/scratch/xvfb-run.1GaWeI’ ‘~/tmp/scratch/xvfb-run.1Tn7VD’   ‘~/tmp/scratch/xvfb-run.2hhs1H’ ‘~/tmp/scratch/xvfb-run.3JPodp’   ‘~/tmp/scratch/xvfb-run.65KHUz’ ‘~/tmp/scratch/xvfb-run.72eNPG’   ‘~/tmp/scratch/xvfb-run.96k8km’ ‘~/tmp/scratch/xvfb-run.9EBtJ0’   ‘~/tmp/scratch/xvfb-run.AZiNQz’ ‘~/tmp/scratch/xvfb-run.Al0HwY’   ‘~/tmp/scratch/xvfb-run.CzNisp’ ‘~/tmp/scratch/xvfb-run.DgnRL4’   ‘~/tmp/scratch/xvfb-run.DkZfWK’ ‘~/tmp/scratch/xvfb-run.E5sUmL’   ‘~/tmp/scratch/xvfb-run.GnvMXt’ ‘~/tmp/scratch/xvfb-run.HaKUgw’   ‘~/tmp/scratch/xvfb-run.IVsjyB’ ‘~/tmp/scratch/xvfb-run.LVBbaX’   ‘~/tmp/scratch/xvfb-run.MgjBkj’ ‘~/tmp/scratch/xvfb-run.MmirZZ’   ‘~/tmp/scratch/xvfb-run.N1kNkK’ ‘~/tmp/scratch/xvfb-run.NCKdD4’   ‘~/tmp/scratch/xvfb-run.Ppc0ko’ ‘~/tmp/scratch/xvfb-run.Q9qpSy’   ‘~/tmp/scratch/xvfb-run.QFmAKR’ ‘~/tmp/scratch/xvfb-run.QP0ewo’   ‘~/tmp/scratch/xvfb-run.Rok5xL’ ‘~/tmp/scratch/xvfb-run.TATfRs’   ‘~/tmp/scratch/xvfb-run.Txwaem’ ‘~/tmp/scratch/xvfb-run.UDlM8f’   ‘~/tmp/scratch/xvfb-run.VHE0S9’ ‘~/tmp/scratch/xvfb-run.VmzZkR’   ‘~/tmp/scratch/xvfb-run.WqNsdR’ ‘~/tmp/scratch/xvfb-run.XOy2Gz’   ‘~/tmp/scratch/xvfb-run.XQGIkj’ ‘~/tmp/scratch/xvfb-run.Y8r7v9’   ‘~/tmp/scratch/xvfb-run.ZGriPG’ ‘~/tmp/scratch/xvfb-run.ZT29BB’   ‘~/tmp/scratch/xvfb-run.aodJV1’ ‘~/tmp/scratch/xvfb-run.bszckW’   ‘~/tmp/scratch/xvfb-run.d411ZJ’ ‘~/tmp/scratch/xvfb-run.engUZX’   ‘~/tmp/scratch/xvfb-run.h6t0Dh’ ‘~/tmp/scratch/xvfb-run.iUQKVu’   ‘~/tmp/scratch/xvfb-run.jTOWKb’ ‘~/tmp/scratch/xvfb-run.mUQpHQ’   ‘~/tmp/scratch/xvfb-run.pGbBIk’ ‘~/tmp/scratch/xvfb-run.qNYbrI’   ‘~/tmp/scratch/xvfb-run.rUSXcO’ ‘~/tmp/scratch/xvfb-run.rk6jbC’   ‘~/tmp/scratch/xvfb-run.taKQXt’ ‘~/tmp/scratch/xvfb-run.u6JtFA’   ‘~/tmp/scratch/xvfb-run.vPvlP4’ ‘~/tmp/scratch/xvfb-run.xOnPPm’   ‘~/tmp/scratch/xvfb-run.xhi8t8’ ‘~/.cache/quarto/sass/sass.kv-shm’   ‘~/.cache/quarto/sass/sass.kv-wal’
• DONE

Status: 1 NOTE