• using R Under development (unstable) (2025-09-11 r88813)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-3) 15.2.0     GNU Fortran (Debian 15.2.0-3) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘quollr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘quollr’ version ‘0.3.7’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘quollr’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-15 (Debian 15.2.0-3) 15.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] ERROR Running examples in ‘quollr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: plot_rmse_layouts > ### Title: Arrange RMSE plot and 2-D layouts > ### Aliases: plot_rmse_layouts > > ### ** Examples > > design <- gen_design(n_right = 4, ncol_right = 2) > plot_rmse_layouts(plots = scurve_plts, design = design) Error in `patchwork::wrap_plots()`: ! Only know how to add <ggplot> and/or <grob> objects Backtrace:     ▆  1. └─quollr::plot_rmse_layouts(plots = scurve_plts, design = design)  2. └─patchwork::wrap_plots(plots)  3. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects")  4. └─rlang::abort(...) Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/11s] ERROR   Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(quollr)   > library(vdiffr)   >   > test_check("quollr")   New names:   * `` -> `...1`   * `` -> `...2`   New names:   * `` -> `...1`   * `` -> `...2`   [ FAIL 1 | WARN 0 | SKIP 33 | PASS 4 ]      ══ Skipped tests (33) ══════════════════════════════════════════════════════════   • On CRAN (30): 'test-2d.R:6:3', 'test-2d.R:16:3', 'test-2d.R:26:3',     'test-2d.R:35:3', 'test-2d.R:43:3', 'test-2d.R:49:3', 'test-2d.R:56:3',     'test-2d.R:69:3', 'test-2d.R:80:3', 'test-2d.R:94:3', 'test-2d.R:102:3',     'test-2d.R:115:3', 'test-2d.R:122:3', 'test-data_processing.R:2:3',     'test-geom_hexgrid.R:5:3', 'test-geom_trimesh.R:6:3', 'test-highd.R:4:3',     'test-highd.R:11:3', 'test-link_plots.R:3:3', 'test-link_plots.R:31:3',     'test-model.R:3:3', 'test-parameters.R:3:3', 'test-parameters.R:11:3',     'test-prediction.R:3:3', 'test-prediction.R:11:3', 'test-prediction.R:20:3',     'test-prediction.R:28:3', 'test-projection.R:7:3', 'test-projection.R:20:3',     'test-projection.R:45:3'   • empty test (3): 'test-highd.R:18:1', 'test-link_plots.R:10:1',     'test-link_plots.R:40:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-prediction.R:36:3'): plot_rmse_layouts() works ─────────────────   Error in `patchwork::wrap_plots(plots)`: Only know how to add <ggplot> and/or <grob> objects   Backtrace:       ▆    1. └─quollr::plot_rmse_layouts(plots = scurve_plts, design = design) at test-prediction.R:36:3    2. └─patchwork::wrap_plots(plots)    3. └─cli::cli_abort("Only know how to add {.cls ggplot} and/or {.cls grob} objects")    4. └─rlang::abort(...)      [ FAIL 1 | WARN 0 | SKIP 33 | PASS 4 ]   Deleting unused snapshots:   • geom_hexgrid/geom-hexgrid-basic-with-all-bin-centroids.svg   • geom_trimesh/geom-hexgrid-basic-with-all-bin-centroids.svg   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [27s/37s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘quollr1quickstart.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘quollr1quickstart.Rmd’ --- re-building ‘quollr2dataprocessing.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘quollr2dataprocessing.Rmd’ --- re-building ‘quollr3hexbin.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘quollr3hexbin.Rmd’ --- re-building ‘quollr4algo.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘quollr4algo.Rmd’ --- re-building ‘quollr5summary.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘quollr5summary.Rmd’ --- re-building ‘quollr6bestbinwidth.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘quollr6bestbinwidth.Rmd’ --- re-building ‘quollr7bestfit.Rmd’ using rmarkdown Quitting from quollr7bestfit.Rmd:44-47 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'quollr7bestfit.Rmd' failed with diagnostics: Only know how to add <ggplot> and/or <grob> objects --- failed re-building ‘quollr7bestfit.Rmd’ SUMMARY: processing the following file failed:   ‘quollr7bestfit.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs