• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:09:22 UTC
• checking for file ‘quallmer/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘quallmer’ version ‘0.4.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘quallmer’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/12s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [12s/17s] OK   Running ‘testthat.R’ [12s/16s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/2s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp04DnZk’ ‘~/tmp/scratch/Rtmp08ATWo’   ‘~/tmp/scratch/Rtmp0ATFXI’ ‘~/tmp/scratch/Rtmp0CEewY’   ‘~/tmp/scratch/Rtmp0UTUw4’ ‘~/tmp/scratch/Rtmp1vh6WI’   ‘~/tmp/scratch/Rtmp235HvB’ ‘~/tmp/scratch/Rtmp24X1ub’   ‘~/tmp/scratch/Rtmp2Belhc’ ‘~/tmp/scratch/Rtmp3DpyAB’   ‘~/tmp/scratch/Rtmp3haTEj’ ‘~/tmp/scratch/Rtmp4vH1jN’   ‘~/tmp/scratch/Rtmp5GucgP’ ‘~/tmp/scratch/Rtmp5RENnZ’   ‘~/tmp/scratch/Rtmp5mXGBa’ ‘~/tmp/scratch/Rtmp5o4V6P’   ‘~/tmp/scratch/Rtmp6FEpVt’ ‘~/tmp/scratch/Rtmp6GjbBR’   ‘~/tmp/scratch/Rtmp7TlPP7’ ‘~/tmp/scratch/Rtmp8JaIHW’   ‘~/tmp/scratch/Rtmp8b4fDD’ ‘~/tmp/scratch/Rtmp9B05gd’   ‘~/tmp/scratch/Rtmp9LvgWe’ ‘~/tmp/scratch/Rtmp9hUsgQ’   ‘~/tmp/scratch/RtmpACm2gX’ ‘~/tmp/scratch/RtmpAWIaRD’   ‘~/tmp/scratch/RtmpBAehOX’ ‘~/tmp/scratch/RtmpBTmeJP’   ‘~/tmp/scratch/RtmpC8Fzmg’ ‘~/tmp/scratch/RtmpCTLAds’   ‘~/tmp/scratch/RtmpCaxrF2’ ‘~/tmp/scratch/RtmpDGqqS8’   ‘~/tmp/scratch/RtmpDINN6i’ ‘~/tmp/scratch/RtmpDks00T’   ‘~/tmp/scratch/RtmpE1opQy’ ‘~/tmp/scratch/RtmpE4o8l3’   ‘~/tmp/scratch/RtmpE7FdEo’ ‘~/tmp/scratch/RtmpELshSJ’   ‘~/tmp/scratch/RtmpFK44CU’ ‘~/tmp/scratch/RtmpFQXrwh’   ‘~/tmp/scratch/RtmpFgI1gB’ ‘~/tmp/scratch/RtmpGrJr4f’   ‘~/tmp/scratch/RtmpGsXGlf’ ‘~/tmp/scratch/RtmpHJYLOb’   ‘~/tmp/scratch/RtmpHY8fgL’ ‘~/tmp/scratch/RtmpI26oBz’   ‘~/tmp/scratch/RtmpIXDtSI’ ‘~/tmp/scratch/RtmpIgdd1v’   ‘~/tmp/scratch/RtmpIub5k0’ ‘~/tmp/scratch/RtmpJfqDMD’   ‘~/tmp/scratch/RtmpK8cSSp’ ‘~/tmp/scratch/RtmpKSDjjt’   ‘~/tmp/scratch/RtmpLttFVG’ ‘~/tmp/scratch/RtmpMQKaeZ’   ‘~/tmp/scratch/RtmpOC2kkY’ ‘~/tmp/scratch/RtmpOfhOUt’   ‘~/tmp/scratch/RtmpOsWbH0’ ‘~/tmp/scratch/RtmpPv2obm’   ‘~/tmp/scratch/RtmpPyQCqt’ ‘~/tmp/scratch/RtmpQIBRFw’   ‘~/tmp/scratch/RtmpQtfVT7’ ‘~/tmp/scratch/RtmpSYCm5z’   ‘~/tmp/scratch/RtmpTPuYKw’ ‘~/tmp/scratch/RtmpTYSCZm’   ‘~/tmp/scratch/RtmpTbPzF4’ ‘~/tmp/scratch/RtmpTkofnt’   ‘~/tmp/scratch/RtmpToN4Hs’ ‘~/tmp/scratch/RtmpTrFAez’   ‘~/tmp/scratch/RtmpTviH9A’ ‘~/tmp/scratch/RtmpUMh8QI’   ‘~/tmp/scratch/RtmpVmY09m’ ‘~/tmp/scratch/RtmpW6G5lt’   ‘~/tmp/scratch/RtmpWrt6eF’ ‘~/tmp/scratch/RtmpWsoYv5’   ‘~/tmp/scratch/RtmpWz2xca’ ‘~/tmp/scratch/RtmpYntecW’   ‘~/tmp/scratch/RtmpYo5OHq’ ‘~/tmp/scratch/RtmpZjOWAx’   ‘~/tmp/scratch/Rtmpa9GYBa’ ‘~/tmp/scratch/RtmpaVq1BS’   ‘~/tmp/scratch/RtmpabWhrU’ ‘~/tmp/scratch/RtmpanMCSD’   ‘~/tmp/scratch/RtmpaucOVq’ ‘~/tmp/scratch/RtmpayKaZK’   ‘~/tmp/scratch/RtmpbGnYAo’ ‘~/tmp/scratch/RtmpbXBbuw’   ‘~/tmp/scratch/RtmpcBAedV’ ‘~/tmp/scratch/RtmpcUrWwY’   ‘~/tmp/scratch/RtmpcWXVBd’ ‘~/tmp/scratch/RtmpcqxnRl’   ‘~/tmp/scratch/RtmpcvKo40’ ‘~/tmp/scratch/RtmpcwrpbY’   ‘~/tmp/scratch/RtmpdGXwYI’ ‘~/tmp/scratch/RtmpdN3y72’   ‘~/tmp/scratch/RtmpdSdfAd’ ‘~/tmp/scratch/Rtmpdd837g’   ‘~/tmp/scratch/RtmpdtJc88’ ‘~/tmp/scratch/Rtmpf5aoh3’   ‘~/tmp/scratch/Rtmpf8WWO4’ ‘~/tmp/scratch/RtmpfDr2My’   ‘~/tmp/scratch/RtmpfX49id’ ‘~/tmp/scratch/Rtmpfmkh7N’   ‘~/tmp/scratch/RtmpgVTfNy’ ‘~/tmp/scratch/RtmpgvxdT0’   ‘~/tmp/scratch/RtmphODsRj’ ‘~/tmp/scratch/RtmpiP4U2r’   ‘~/tmp/scratch/RtmpivngTq’ ‘~/tmp/scratch/Rtmpj35yuA’   ‘~/tmp/scratch/Rtmpj3fgLN’ ‘~/tmp/scratch/Rtmpj5S2zl’   ‘~/tmp/scratch/RtmpjGLcj1’ ‘~/tmp/scratch/Rtmpji8290’   ‘~/tmp/scratch/RtmpkMeaLB’ ‘~/tmp/scratch/Rtmpl0gcfc’   ‘~/tmp/scratch/RtmplAYpC0’ ‘~/tmp/scratch/RtmplGyUsi’   ‘~/tmp/scratch/RtmplaP2KI’ ‘~/tmp/scratch/RtmpmJ9Bdy’   ‘~/tmp/scratch/RtmpmR0HZz’ ‘~/tmp/scratch/RtmpmTd0DE’   ‘~/tmp/scratch/RtmpmmzT6N’ ‘~/tmp/scratch/RtmpnDD7kx’   ‘~/tmp/scratch/RtmpoF9cZQ’ ‘~/tmp/scratch/RtmpqNm9fo’   ‘~/tmp/scratch/RtmpqdBoiR’ ‘~/tmp/scratch/RtmpqxWJw4’   ‘~/tmp/scratch/RtmprVcpGD’ ‘~/tmp/scratch/Rtmps3dlr0’   ‘~/tmp/scratch/RtmpslOOV9’ ‘~/tmp/scratch/RtmptnGLmU’   ‘~/tmp/scratch/RtmptonwpU’ ‘~/tmp/scratch/RtmpuFyGUY’   ‘~/tmp/scratch/RtmpuN5udd’ ‘~/tmp/scratch/RtmpuNqU8N’   ‘~/tmp/scratch/Rtmpv1vg1N’ ‘~/tmp/scratch/Rtmpv5WwNZ’   ‘~/tmp/scratch/RtmpvaFU8T’ ‘~/tmp/scratch/RtmpwyQ3O3’   ‘~/tmp/scratch/RtmpxMjoXN’ ‘~/tmp/scratch/Rtmpxmq89T’   ‘~/tmp/scratch/RtmpyIj8GV’ ‘~/tmp/scratch/Rtmpys2cBm’   ‘~/tmp/scratch/RtmpzMXszG’   ‘~/tmp/scratch/quarto-session44ac981782d66ce2’   ‘~/tmp/scratch/quarto-session49f89ac4a9410960’   ‘~/tmp/scratch/quarto-session5ef1d363f3041b0a’   ‘~/tmp/scratch/xvfb-run.2QM0Ib’ ‘~/tmp/scratch/xvfb-run.2ed5la’   ‘~/tmp/scratch/xvfb-run.4ql6aA’ ‘~/tmp/scratch/xvfb-run.5eCO0j’   ‘~/tmp/scratch/xvfb-run.6w0ch7’ ‘~/tmp/scratch/xvfb-run.7coONE’   ‘~/tmp/scratch/xvfb-run.7vZm9T’ ‘~/tmp/scratch/xvfb-run.8PMiBy’   ‘~/tmp/scratch/xvfb-run.92sEDM’ ‘~/tmp/scratch/xvfb-run.9BfqKl’   ‘~/tmp/scratch/xvfb-run.AgHW05’ ‘~/tmp/scratch/xvfb-run.B3osVO’   ‘~/tmp/scratch/xvfb-run.D8cCL8’ ‘~/tmp/scratch/xvfb-run.GPqBo7’   ‘~/tmp/scratch/xvfb-run.HQYEjU’ ‘~/tmp/scratch/xvfb-run.IM4sKT’   ‘~/tmp/scratch/xvfb-run.JTuc85’ ‘~/tmp/scratch/xvfb-run.K7sBsL’   ‘~/tmp/scratch/xvfb-run.M0nDec’ ‘~/tmp/scratch/xvfb-run.OhlSjh’   ‘~/tmp/scratch/xvfb-run.SThMtt’ ‘~/tmp/scratch/xvfb-run.Tm5qsy’   ‘~/tmp/scratch/xvfb-run.UJlcqU’ ‘~/tmp/scratch/xvfb-run.Xvtn1c’   ‘~/tmp/scratch/xvfb-run.bWW9Bk’ ‘~/tmp/scratch/xvfb-run.bghZ1m’   ‘~/tmp/scratch/xvfb-run.bp3uQc’ ‘~/tmp/scratch/xvfb-run.cBTvrY’   ‘~/tmp/scratch/xvfb-run.cEa7cE’ ‘~/tmp/scratch/xvfb-run.d3h51d’   ‘~/tmp/scratch/xvfb-run.dwDEFs’ ‘~/tmp/scratch/xvfb-run.e5lJXd’   ‘~/tmp/scratch/xvfb-run.eLrCgm’ ‘~/tmp/scratch/xvfb-run.ez3j1O’   ‘~/tmp/scratch/xvfb-run.h6tePZ’ ‘~/tmp/scratch/xvfb-run.hUrjET’   ‘~/tmp/scratch/xvfb-run.iLArcM’ ‘~/tmp/scratch/xvfb-run.mO5DcA’   ‘~/tmp/scratch/xvfb-run.oTvlmd’ ‘~/tmp/scratch/xvfb-run.oenIs4’   ‘~/tmp/scratch/xvfb-run.p6rwZ4’ ‘~/tmp/scratch/xvfb-run.pTDIkZ’   ‘~/tmp/scratch/xvfb-run.qELc3D’ ‘~/tmp/scratch/xvfb-run.sDC8DS’   ‘~/tmp/scratch/xvfb-run.tOUvRO’ ‘~/tmp/scratch/xvfb-run.uGtUl9’   ‘~/tmp/scratch/xvfb-run.uP7sHj’ ‘~/tmp/scratch/xvfb-run.uVVvRS’   ‘~/tmp/scratch/xvfb-run.vwPEYo’ ‘~/tmp/scratch/xvfb-run.x1v3KP’   ‘~/tmp/scratch/xvfb-run.x9IHtF’ ‘~/tmp/scratch/xvfb-run.xEoLOo’   ‘~/tmp/scratch/xvfb-run.xpvt7G’ ‘~/tmp/scratch/xvfb-run.yxAFWP’   ‘~/tmp/scratch/xvfb-run.z7qGjT’ ‘~/tmp/scratch/xvfb-run.zCczQY’   ‘~/tmp/scratch/xvfb-run.zUYcak’
• DONE

Status: 1 NOTE