• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:09:12 UTC
• checking for file ‘qtl2pattern/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘qtl2pattern’ version ‘1.2.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘qtl2pattern’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/18s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [12s/18s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp15AOey’ ‘~/tmp/scratch/Rtmp1NK67G’   ‘~/tmp/scratch/Rtmp1TU4iu’ ‘~/tmp/scratch/Rtmp2RJ1tv’   ‘~/tmp/scratch/Rtmp3DGwZS’ ‘~/tmp/scratch/Rtmp3EB1p0’   ‘~/tmp/scratch/Rtmp3RlTjc’ ‘~/tmp/scratch/Rtmp3SHqil’   ‘~/tmp/scratch/Rtmp4RoAkc’ ‘~/tmp/scratch/Rtmp4yHlLk’   ‘~/tmp/scratch/Rtmp5Qag1u’ ‘~/tmp/scratch/Rtmp63VgL2’   ‘~/tmp/scratch/Rtmp655nn5’ ‘~/tmp/scratch/Rtmp6C0LQI’   ‘~/tmp/scratch/Rtmp6WIsl0’ ‘~/tmp/scratch/Rtmp7Lmlpi’   ‘~/tmp/scratch/Rtmp7qdS8w’ ‘~/tmp/scratch/Rtmp9ReMma’   ‘~/tmp/scratch/Rtmp9UaLLC’ ‘~/tmp/scratch/Rtmp9aCv8u’   ‘~/tmp/scratch/Rtmp9o58Gh’ ‘~/tmp/scratch/Rtmp9zKEhX’   ‘~/tmp/scratch/RtmpAEX0kZ’ ‘~/tmp/scratch/RtmpAYNv0S’   ‘~/tmp/scratch/RtmpAeShuT’ ‘~/tmp/scratch/RtmpB49hLi’   ‘~/tmp/scratch/RtmpBHDd8Z’ ‘~/tmp/scratch/RtmpBqYs3L’   ‘~/tmp/scratch/RtmpClyylX’ ‘~/tmp/scratch/RtmpDQqpF0’   ‘~/tmp/scratch/RtmpDrSws3’ ‘~/tmp/scratch/RtmpEMWiAi’   ‘~/tmp/scratch/RtmpFTZq7J’ ‘~/tmp/scratch/RtmpGS2djH’   ‘~/tmp/scratch/RtmpGShkMV’ ‘~/tmp/scratch/RtmpH3nsxn’   ‘~/tmp/scratch/RtmpHbW0Tu’ ‘~/tmp/scratch/RtmpHieSjJ’   ‘~/tmp/scratch/RtmpI5DXc6’ ‘~/tmp/scratch/RtmpIG8wHq’   ‘~/tmp/scratch/RtmpJwxjki’ ‘~/tmp/scratch/RtmpK3SaaS’   ‘~/tmp/scratch/RtmpKIQyO7’ ‘~/tmp/scratch/RtmpLxBUJq’   ‘~/tmp/scratch/RtmpM36jHt’ ‘~/tmp/scratch/RtmpMVDe8w’   ‘~/tmp/scratch/RtmpMpwFKM’ ‘~/tmp/scratch/RtmpN93ct0’   ‘~/tmp/scratch/RtmpNFZmjh’ ‘~/tmp/scratch/RtmpNXKrpW’   ‘~/tmp/scratch/RtmpO5hvt0’ ‘~/tmp/scratch/RtmpO6p92e’   ‘~/tmp/scratch/RtmpOMsI8Y’ ‘~/tmp/scratch/RtmpOd1qYr’   ‘~/tmp/scratch/RtmpOiKTc5’ ‘~/tmp/scratch/RtmpPA4JHW’   ‘~/tmp/scratch/RtmpPxw7OI’ ‘~/tmp/scratch/RtmpQm2AG9’   ‘~/tmp/scratch/RtmpQqPapa’ ‘~/tmp/scratch/RtmpRLBdXr’   ‘~/tmp/scratch/RtmpS0vcPE’ ‘~/tmp/scratch/RtmpSqZNJf’   ‘~/tmp/scratch/RtmpT5R1qZ’ ‘~/tmp/scratch/RtmpTQmSef’   ‘~/tmp/scratch/RtmpTXtRyf’ ‘~/tmp/scratch/RtmpU35Uar’   ‘~/tmp/scratch/RtmpU5h8Uj’ ‘~/tmp/scratch/RtmpU9MgAp’   ‘~/tmp/scratch/RtmpVIehbB’ ‘~/tmp/scratch/RtmpVW6bjs’   ‘~/tmp/scratch/RtmpVfDm9m’ ‘~/tmp/scratch/RtmpVl5fZX’   ‘~/tmp/scratch/RtmpWILbMk’ ‘~/tmp/scratch/RtmpWgOt4d’   ‘~/tmp/scratch/RtmpWlrTml’ ‘~/tmp/scratch/RtmpXEs5K8’   ‘~/tmp/scratch/RtmpXLzyo6’ ‘~/tmp/scratch/RtmpXWustK’   ‘~/tmp/scratch/RtmpXYTAVg’ ‘~/tmp/scratch/RtmpXminHg’   ‘~/tmp/scratch/RtmpY0FI13’ ‘~/tmp/scratch/RtmpY0VE6q’   ‘~/tmp/scratch/RtmpYtDGJK’ ‘~/tmp/scratch/RtmpZMadRf’   ‘~/tmp/scratch/RtmpZt2ynG’ ‘~/tmp/scratch/RtmpaH88Zx’   ‘~/tmp/scratch/RtmpbVNFea’ ‘~/tmp/scratch/RtmpbfkXL3’   ‘~/tmp/scratch/RtmpdOO9gP’ ‘~/tmp/scratch/RtmpdTDJFv’   ‘~/tmp/scratch/RtmpeBl4zx’ ‘~/tmp/scratch/RtmpeHnkgj’   ‘~/tmp/scratch/RtmpedUPCb’ ‘~/tmp/scratch/Rtmpf45Jc0’   ‘~/tmp/scratch/RtmpggSHbe’ ‘~/tmp/scratch/RtmphJlZpH’   ‘~/tmp/scratch/RtmpiPuLGQ’ ‘~/tmp/scratch/RtmpioWMVl’   ‘~/tmp/scratch/Rtmpj0VBx6’ ‘~/tmp/scratch/Rtmpk115pC’   ‘~/tmp/scratch/RtmpkQ184x’ ‘~/tmp/scratch/RtmpkgmRCg’   ‘~/tmp/scratch/RtmpkjstGA’ ‘~/tmp/scratch/RtmpkvJ7bO’   ‘~/tmp/scratch/RtmplBxwb8’ ‘~/tmp/scratch/RtmplJeyKj’   ‘~/tmp/scratch/RtmplpEPfj’ ‘~/tmp/scratch/RtmplqfsMH’   ‘~/tmp/scratch/RtmpmO1ztO’ ‘~/tmp/scratch/Rtmpml4nIi’   ‘~/tmp/scratch/RtmpnQdPaH’ ‘~/tmp/scratch/RtmpnX4xav’   ‘~/tmp/scratch/RtmppL44ii’ ‘~/tmp/scratch/RtmppwUeHg’   ‘~/tmp/scratch/RtmprhINiD’ ‘~/tmp/scratch/RtmprpokBh’   ‘~/tmp/scratch/Rtmpt2fuCF’ ‘~/tmp/scratch/RtmpthPGXX’   ‘~/tmp/scratch/RtmptpgmGP’ ‘~/tmp/scratch/RtmptyEpfW’   ‘~/tmp/scratch/RtmpuIXxbQ’ ‘~/tmp/scratch/Rtmpuo9zQR’   ‘~/tmp/scratch/Rtmpv4SzRt’ ‘~/tmp/scratch/RtmpvAwPSi’   ‘~/tmp/scratch/RtmpwrxWpk’ ‘~/tmp/scratch/RtmpwsrXSg’   ‘~/tmp/scratch/RtmpxU9MDp’ ‘~/tmp/scratch/RtmpxUdkMI’   ‘~/tmp/scratch/RtmpyN8KyK’ ‘~/tmp/scratch/RtmpyYtpVl’   ‘~/tmp/scratch/RtmpycNwom’ ‘~/tmp/scratch/RtmpyqRHei’   ‘~/tmp/scratch/Rtmpyw9KAl’ ‘~/tmp/scratch/Rtmpz2F3BR’   ‘~/tmp/scratch/RtmpzL7tBG’ ‘~/tmp/scratch/RtmpzatnAI’   ‘~/tmp/scratch/quarto-session7a588856d92797f8’   ‘~/tmp/scratch/xvfb-run.0mSZCE’ ‘~/tmp/scratch/xvfb-run.19Gh4J’   ‘~/tmp/scratch/xvfb-run.1DXCrs’ ‘~/tmp/scratch/xvfb-run.3QAz3r’   ‘~/tmp/scratch/xvfb-run.3rnHSg’ ‘~/tmp/scratch/xvfb-run.4v7KiC’   ‘~/tmp/scratch/xvfb-run.5zFJwB’ ‘~/tmp/scratch/xvfb-run.6xc7zm’   ‘~/tmp/scratch/xvfb-run.9Qz6UT’ ‘~/tmp/scratch/xvfb-run.CprkZe’   ‘~/tmp/scratch/xvfb-run.DySv1q’ ‘~/tmp/scratch/xvfb-run.EvViSw’   ‘~/tmp/scratch/xvfb-run.EzSFlu’ ‘~/tmp/scratch/xvfb-run.Izh0xg’   ‘~/tmp/scratch/xvfb-run.KciuIB’ ‘~/tmp/scratch/xvfb-run.LVkHfT’   ‘~/tmp/scratch/xvfb-run.NLMpAE’ ‘~/tmp/scratch/xvfb-run.NV09Xf’   ‘~/tmp/scratch/xvfb-run.PLdkPS’ ‘~/tmp/scratch/xvfb-run.QDHh7a’   ‘~/tmp/scratch/xvfb-run.RirE6Z’ ‘~/tmp/scratch/xvfb-run.T4SxQr’   ‘~/tmp/scratch/xvfb-run.TzfeJj’ ‘~/tmp/scratch/xvfb-run.Vondv6’   ‘~/tmp/scratch/xvfb-run.Wcm4SB’ ‘~/tmp/scratch/xvfb-run.Wz8LhJ’   ‘~/tmp/scratch/xvfb-run.ZAPAwz’ ‘~/tmp/scratch/xvfb-run.ZIA9E5’   ‘~/tmp/scratch/xvfb-run.Zj1y4C’ ‘~/tmp/scratch/xvfb-run.aFWf6M’   ‘~/tmp/scratch/xvfb-run.bXFD6Q’ ‘~/tmp/scratch/xvfb-run.bi7DAh’   ‘~/tmp/scratch/xvfb-run.biNHjS’ ‘~/tmp/scratch/xvfb-run.cVkm1X’   ‘~/tmp/scratch/xvfb-run.dXEVwg’ ‘~/tmp/scratch/xvfb-run.dcntju’   ‘~/tmp/scratch/xvfb-run.edWKfj’ ‘~/tmp/scratch/xvfb-run.fsYkhK’   ‘~/tmp/scratch/xvfb-run.g20xph’ ‘~/tmp/scratch/xvfb-run.gVo1Gz’   ‘~/tmp/scratch/xvfb-run.hEap4U’ ‘~/tmp/scratch/xvfb-run.iSmZz4’   ‘~/tmp/scratch/xvfb-run.iqEtqO’ ‘~/tmp/scratch/xvfb-run.jjmM7N’   ‘~/tmp/scratch/xvfb-run.kkR5CJ’ ‘~/tmp/scratch/xvfb-run.lbgoXx’   ‘~/tmp/scratch/xvfb-run.lvsHvT’ ‘~/tmp/scratch/xvfb-run.o2Z37J’   ‘~/tmp/scratch/xvfb-run.pPZKrC’ ‘~/tmp/scratch/xvfb-run.pqyw24’   ‘~/tmp/scratch/xvfb-run.qCayO5’ ‘~/tmp/scratch/xvfb-run.t6rQnE’   ‘~/tmp/scratch/xvfb-run.tQy9pe’ ‘~/tmp/scratch/xvfb-run.u01hco’   ‘~/tmp/scratch/xvfb-run.veiTnp’ ‘~/tmp/scratch/xvfb-run.vqUKfL’   ‘~/tmp/scratch/xvfb-run.xiFX4u’ ‘~/tmp/scratch/xvfb-run.xr02xB’   ‘~/tmp/scratch/xvfb-run.yywpfL’ ‘~/tmp/scratch/xvfb-run.z8GvNI’
• DONE

Status: 1 NOTE