• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:05:55 UTC
• checking for file ‘purgeR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘purgeR’ version ‘1.8.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Eugenio López-Cortegano <elcortegano@protonmail.com>’ The BugReports field in DESCRIPTION has   https://gitlab.com/elcortegano/purgeR/-/work_items/ which should likely be   https://gitlab.com/elcortegano/purgeR/-/issues instead.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘purgeR’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/8s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Rd files without \usage:   ‘sample_allele.Rd’ ‘search_ancestors.Rd’ \arguments should not be documented without \usage.
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/11s] OK   Running ‘testthat.R’ [8s/11s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [30s/33s] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp07Gz3k’ ‘~/tmp/scratch/Rtmp0BEoc5’   ‘~/tmp/scratch/Rtmp0GIIPH’ ‘~/tmp/scratch/Rtmp1lPsvV’   ‘~/tmp/scratch/Rtmp2481Gq’ ‘~/tmp/scratch/Rtmp2QIAhp’   ‘~/tmp/scratch/Rtmp3JGAHz’ ‘~/tmp/scratch/Rtmp3VcmiM’   ‘~/tmp/scratch/Rtmp435Mwv’ ‘~/tmp/scratch/Rtmp5O79T7’   ‘~/tmp/scratch/Rtmp6713aN’ ‘~/tmp/scratch/Rtmp6Fgqmg’   ‘~/tmp/scratch/Rtmp6hstAs’ ‘~/tmp/scratch/Rtmp6qM42V’   ‘~/tmp/scratch/Rtmp7RB7ks’ ‘~/tmp/scratch/Rtmp7fZ0pr’   ‘~/tmp/scratch/Rtmp8lUsw1’ ‘~/tmp/scratch/Rtmp9axlVs’   ‘~/tmp/scratch/Rtmp9xb0l7’ ‘~/tmp/scratch/Rtmp9xgqs5’   ‘~/tmp/scratch/RtmpA7Ig3u’ ‘~/tmp/scratch/RtmpAAuyqA’   ‘~/tmp/scratch/RtmpAHWajk’ ‘~/tmp/scratch/RtmpAyNpkw’   ‘~/tmp/scratch/RtmpBD99UW’ ‘~/tmp/scratch/RtmpC4EzwW’   ‘~/tmp/scratch/RtmpCeZqIv’ ‘~/tmp/scratch/RtmpCnZz7Y’   ‘~/tmp/scratch/RtmpCyyPtz’ ‘~/tmp/scratch/RtmpDQzqNm’   ‘~/tmp/scratch/RtmpDTXSBp’ ‘~/tmp/scratch/RtmpDqCSFS’   ‘~/tmp/scratch/RtmpDxVHJh’ ‘~/tmp/scratch/RtmpESICdB’   ‘~/tmp/scratch/RtmpETIEGo’ ‘~/tmp/scratch/RtmpEqgQmk’   ‘~/tmp/scratch/RtmpFHtQCd’ ‘~/tmp/scratch/RtmpG46Oun’   ‘~/tmp/scratch/RtmpGenRl5’ ‘~/tmp/scratch/RtmpHPgbis’   ‘~/tmp/scratch/RtmpHRrVlJ’ ‘~/tmp/scratch/RtmpHixxdi’   ‘~/tmp/scratch/RtmpIvH1u7’ ‘~/tmp/scratch/RtmpJTLKVx’   ‘~/tmp/scratch/RtmpKWN5QB’ ‘~/tmp/scratch/RtmpKug6br’   ‘~/tmp/scratch/RtmpLt6OAF’ ‘~/tmp/scratch/RtmpML2vwa’   ‘~/tmp/scratch/RtmpMLY0QD’ ‘~/tmp/scratch/RtmpMQ8tk9’   ‘~/tmp/scratch/RtmpMaOvez’ ‘~/tmp/scratch/RtmpNh6196’   ‘~/tmp/scratch/RtmpO5Dncz’ ‘~/tmp/scratch/RtmpO8zM67’   ‘~/tmp/scratch/RtmpOBrFkh’ ‘~/tmp/scratch/RtmpPJUr3G’   ‘~/tmp/scratch/RtmpQ6lZyz’ ‘~/tmp/scratch/RtmpQNCt1s’   ‘~/tmp/scratch/RtmpQyNRnd’ ‘~/tmp/scratch/RtmpR1yK8B’   ‘~/tmp/scratch/RtmpR4SJJb’ ‘~/tmp/scratch/RtmpRO9D5L’   ‘~/tmp/scratch/RtmpRR2ijF’ ‘~/tmp/scratch/RtmpRWNGSz’   ‘~/tmp/scratch/RtmpSsvpmx’ ‘~/tmp/scratch/RtmpSwfXAK’   ‘~/tmp/scratch/RtmpU0R8BN’ ‘~/tmp/scratch/RtmpUB68Iq’   ‘~/tmp/scratch/RtmpUXcZjH’ ‘~/tmp/scratch/RtmpVyEcss’   ‘~/tmp/scratch/RtmpVznT77’ ‘~/tmp/scratch/RtmpWjhCJ9’   ‘~/tmp/scratch/RtmpY5S4Bg’ ‘~/tmp/scratch/RtmpZKkoBh’   ‘~/tmp/scratch/RtmpZVezuD’ ‘~/tmp/scratch/RtmpZoygoN’   ‘~/tmp/scratch/RtmpaJ5Sw0’ ‘~/tmp/scratch/Rtmpb2fd7i’   ‘~/tmp/scratch/RtmpbUN337’ ‘~/tmp/scratch/RtmpbUVGFD’   ‘~/tmp/scratch/Rtmpcr4uXR’ ‘~/tmp/scratch/Rtmpd3FEus’   ‘~/tmp/scratch/RtmpdHpDTp’ ‘~/tmp/scratch/RtmpdIKUut’   ‘~/tmp/scratch/Rtmpddx4TG’ ‘~/tmp/scratch/Rtmpe26l92’   ‘~/tmp/scratch/Rtmpe5PH1m’ ‘~/tmp/scratch/RtmpgUXWze’   ‘~/tmp/scratch/RtmphSi3vB’ ‘~/tmp/scratch/RtmphgYpVC’   ‘~/tmp/scratch/RtmpiUUvdF’ ‘~/tmp/scratch/RtmpinFMI7’   ‘~/tmp/scratch/RtmpjWDGSd’ ‘~/tmp/scratch/RtmpjpCga5’   ‘~/tmp/scratch/RtmpjvnO7f’ ‘~/tmp/scratch/RtmpkBuEuA’   ‘~/tmp/scratch/RtmpkGhweQ’ ‘~/tmp/scratch/RtmpkehlMq’   ‘~/tmp/scratch/RtmplChQam’ ‘~/tmp/scratch/RtmplLH1Eo’   ‘~/tmp/scratch/RtmplbOp8t’ ‘~/tmp/scratch/RtmplbfeKW’   ‘~/tmp/scratch/Rtmplvf0GD’ ‘~/tmp/scratch/RtmpmvksBX’   ‘~/tmp/scratch/RtmpnFs999’ ‘~/tmp/scratch/RtmpnKHf8L’   ‘~/tmp/scratch/Rtmpo8m20E’ ‘~/tmp/scratch/RtmpouxTw4’   ‘~/tmp/scratch/Rtmpp5RK5l’ ‘~/tmp/scratch/RtmppJr24c’   ‘~/tmp/scratch/Rtmpq2ywRx’ ‘~/tmp/scratch/RtmprCQ6cY’   ‘~/tmp/scratch/Rtmps72HbA’ ‘~/tmp/scratch/Rtmpt2vfcr’   ‘~/tmp/scratch/RtmptlML40’ ‘~/tmp/scratch/RtmptpWU2F’   ‘~/tmp/scratch/Rtmpu5JrrC’ ‘~/tmp/scratch/RtmpuPg8g0’   ‘~/tmp/scratch/RtmpvY5s6I’ ‘~/tmp/scratch/RtmpvdfcIf’   ‘~/tmp/scratch/Rtmpvo8yWU’ ‘~/tmp/scratch/RtmpxnVwEi’   ‘~/tmp/scratch/Rtmpxo9WkW’ ‘~/tmp/scratch/RtmpxsuGFU’   ‘~/tmp/scratch/RtmpxzwebR’ ‘~/tmp/scratch/Rtmpy7jYLI’   ‘~/tmp/scratch/RtmpyLSEje’ ‘~/tmp/scratch/RtmpyxlOLu’   ‘~/tmp/scratch/RtmpzDF7VQ’ ‘~/tmp/scratch/RtmpzHei10’   ‘~/tmp/scratch/RtmpzSgAYU’ ‘~/tmp/scratch/RtmpzUoHCr’   ‘~/tmp/scratch/RtmpzfB8Ea’ ‘~/tmp/scratch/xvfb-run.0WPVCu’   ‘~/tmp/scratch/xvfb-run.0cAEbX’ ‘~/tmp/scratch/xvfb-run.0lXFpW’   ‘~/tmp/scratch/xvfb-run.2Z0HbJ’ ‘~/tmp/scratch/xvfb-run.3uEvmC’   ‘~/tmp/scratch/xvfb-run.8GtDqm’ ‘~/tmp/scratch/xvfb-run.8yjxk9’   ‘~/tmp/scratch/xvfb-run.98QwZG’ ‘~/tmp/scratch/xvfb-run.CeCOtV’   ‘~/tmp/scratch/xvfb-run.D0p3pc’ ‘~/tmp/scratch/xvfb-run.DkeZk3’   ‘~/tmp/scratch/xvfb-run.FoTYNv’ ‘~/tmp/scratch/xvfb-run.IKccOB’   ‘~/tmp/scratch/xvfb-run.ISJOgn’ ‘~/tmp/scratch/xvfb-run.JivADB’   ‘~/tmp/scratch/xvfb-run.JixeFq’ ‘~/tmp/scratch/xvfb-run.LGRnef’   ‘~/tmp/scratch/xvfb-run.LJTXnn’ ‘~/tmp/scratch/xvfb-run.LStwyw’   ‘~/tmp/scratch/xvfb-run.NRFuB5’ ‘~/tmp/scratch/xvfb-run.NdgQAQ’   ‘~/tmp/scratch/xvfb-run.OyfSow’ ‘~/tmp/scratch/xvfb-run.P4Tu2A’   ‘~/tmp/scratch/xvfb-run.SaNXMk’ ‘~/tmp/scratch/xvfb-run.TfG4W6’   ‘~/tmp/scratch/xvfb-run.UG1McY’ ‘~/tmp/scratch/xvfb-run.URx0T6’   ‘~/tmp/scratch/xvfb-run.UmmI6V’ ‘~/tmp/scratch/xvfb-run.UqT26u’   ‘~/tmp/scratch/xvfb-run.VCqJLM’ ‘~/tmp/scratch/xvfb-run.VYUPc9’   ‘~/tmp/scratch/xvfb-run.Vvin2r’ ‘~/tmp/scratch/xvfb-run.W6FDhN’   ‘~/tmp/scratch/xvfb-run.YSPB0V’ ‘~/tmp/scratch/xvfb-run.Yjewu6’   ‘~/tmp/scratch/xvfb-run.YmZlF6’ ‘~/tmp/scratch/xvfb-run.Z8dDTT’   ‘~/tmp/scratch/xvfb-run.ZyNFX0’ ‘~/tmp/scratch/xvfb-run.aBTUNB’   ‘~/tmp/scratch/xvfb-run.apdn3i’ ‘~/tmp/scratch/xvfb-run.ay9P5C’   ‘~/tmp/scratch/xvfb-run.bmHJjw’ ‘~/tmp/scratch/xvfb-run.ceujMK’   ‘~/tmp/scratch/xvfb-run.dFDj4d’ ‘~/tmp/scratch/xvfb-run.duKLNW’   ‘~/tmp/scratch/xvfb-run.fvxzjp’ ‘~/tmp/scratch/xvfb-run.iaxv25’   ‘~/tmp/scratch/xvfb-run.isFe06’ ‘~/tmp/scratch/xvfb-run.kToGeN’   ‘~/tmp/scratch/xvfb-run.nUno5S’ ‘~/tmp/scratch/xvfb-run.qocRLU’   ‘~/tmp/scratch/xvfb-run.tWN6uG’ ‘~/tmp/scratch/xvfb-run.vVYBvy’   ‘~/tmp/scratch/xvfb-run.wsHPBq’ ‘~/tmp/scratch/xvfb-run.wt8ahj’   ‘~/tmp/scratch/xvfb-run.zMyA6E’
• DONE

Status: 3 NOTEs