• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:05:24 UTC
• checking for file ‘publipha/DESCRIPTION’ ... OK
• this is package ‘publipha’ version ‘0.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Jonas Moss <jonas.gjertsen@gmail.com>’ The Description field contains   <arXiv:1911.12445>. Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘publipha’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking C++ specification ... INFO   specified C++17
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [5s/7s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/22s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) ma.Rd:62: Lost braces     62 | \item{yi}{Numeric vector of length code{k} with observed effect size        | ^ checkRd: (-1) ma.Rd:65: Lost braces     65 | \item{vi}{Numeric vector of length code{k} with sampling variances.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [6s/7s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/10s] OK   Running ‘testthat.R’ [7s/10s]
• checking PDF version of manual ... [4s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp07Gz3k’ ‘~/tmp/scratch/Rtmp18NZhW’   ‘~/tmp/scratch/Rtmp1ASYDn’ ‘~/tmp/scratch/Rtmp1Ve5uf’   ‘~/tmp/scratch/Rtmp2C0ipU’ ‘~/tmp/scratch/Rtmp2KGtec’   ‘~/tmp/scratch/Rtmp2QIAhp’ ‘~/tmp/scratch/Rtmp3JGAHz’   ‘~/tmp/scratch/Rtmp45oc2R’ ‘~/tmp/scratch/Rtmp4M1nUT’   ‘~/tmp/scratch/Rtmp4lzulW’ ‘~/tmp/scratch/Rtmp580wra’   ‘~/tmp/scratch/Rtmp5O79T7’ ‘~/tmp/scratch/Rtmp7ow6pA’   ‘~/tmp/scratch/Rtmp8ycP1X’ ‘~/tmp/scratch/Rtmp9axlVs’   ‘~/tmp/scratch/Rtmp9qdyYx’ ‘~/tmp/scratch/RtmpAAuyqA’   ‘~/tmp/scratch/RtmpASkiMe’ ‘~/tmp/scratch/RtmpATZFBB’   ‘~/tmp/scratch/RtmpATjwoh’ ‘~/tmp/scratch/RtmpAaheoU’   ‘~/tmp/scratch/RtmpAfzEpH’ ‘~/tmp/scratch/RtmpAkHwjM’   ‘~/tmp/scratch/RtmpAyNpkw’ ‘~/tmp/scratch/RtmpBIBGL8’   ‘~/tmp/scratch/RtmpBYJiFv’ ‘~/tmp/scratch/RtmpBcI8QF’   ‘~/tmp/scratch/RtmpBcaYbh’ ‘~/tmp/scratch/RtmpBmLeV5’   ‘~/tmp/scratch/RtmpBsZZ2H’ ‘~/tmp/scratch/RtmpCUBfMr’   ‘~/tmp/scratch/RtmpCeZqIv’ ‘~/tmp/scratch/RtmpCjbsbA’   ‘~/tmp/scratch/RtmpCnZz7Y’ ‘~/tmp/scratch/RtmpCyyPtz’   ‘~/tmp/scratch/RtmpD90V8m’ ‘~/tmp/scratch/RtmpDyPDN0’   ‘~/tmp/scratch/RtmpDyt0Uv’ ‘~/tmp/scratch/RtmpEAOATA’   ‘~/tmp/scratch/RtmpECUuWD’ ‘~/tmp/scratch/RtmpEcyf2B’   ‘~/tmp/scratch/RtmpFddN72’ ‘~/tmp/scratch/RtmpFfEjxE’   ‘~/tmp/scratch/RtmpFo7YKB’ ‘~/tmp/scratch/RtmpFpPG1s’   ‘~/tmp/scratch/RtmpFv3TbC’ ‘~/tmp/scratch/RtmpG2nI4d’   ‘~/tmp/scratch/RtmpGHdn2q’ ‘~/tmp/scratch/RtmpGgPx84’   ‘~/tmp/scratch/RtmpGqq6ZJ’ ‘~/tmp/scratch/RtmpHKcJ0U’   ‘~/tmp/scratch/RtmpIln8VS’ ‘~/tmp/scratch/RtmpIvH1u7’   ‘~/tmp/scratch/RtmpKbL3ei’ ‘~/tmp/scratch/RtmpKvQuNg’   ‘~/tmp/scratch/RtmpL99hX0’ ‘~/tmp/scratch/RtmpM2gRFg’   ‘~/tmp/scratch/RtmpMRpqXw’ ‘~/tmp/scratch/RtmpNh6196’   ‘~/tmp/scratch/RtmpO7eGDJ’ ‘~/tmp/scratch/RtmpOBrFkh’   ‘~/tmp/scratch/RtmpOoZVah’ ‘~/tmp/scratch/RtmpP9yZTp’   ‘~/tmp/scratch/RtmpPbsEKI’ ‘~/tmp/scratch/RtmpQCsEnX’   ‘~/tmp/scratch/RtmpQPFg5b’ ‘~/tmp/scratch/RtmpQsrTPD’   ‘~/tmp/scratch/RtmpR4SJJb’ ‘~/tmp/scratch/RtmpRO9D5L’   ‘~/tmp/scratch/RtmpRjUuyk’ ‘~/tmp/scratch/RtmpS5nSMY’   ‘~/tmp/scratch/RtmpSulgMf’ ‘~/tmp/scratch/RtmpSwfXAK’   ‘~/tmp/scratch/RtmpSz0ec7’ ‘~/tmp/scratch/RtmpTax2du’   ‘~/tmp/scratch/RtmpTk5JT5’ ‘~/tmp/scratch/RtmpUANOtb’   ‘~/tmp/scratch/RtmpULElqj’ ‘~/tmp/scratch/RtmpUdL15o’   ‘~/tmp/scratch/RtmpUqJ3us’ ‘~/tmp/scratch/RtmpV7yS1d’   ‘~/tmp/scratch/RtmpVbSelG’ ‘~/tmp/scratch/RtmpVoWxb3’   ‘~/tmp/scratch/RtmpVznT77’ ‘~/tmp/scratch/RtmpWOzs3N’   ‘~/tmp/scratch/RtmpX0qgEJ’ ‘~/tmp/scratch/RtmpX1ziFM’   ‘~/tmp/scratch/RtmpYS3geO’ ‘~/tmp/scratch/RtmpYy2VHR’   ‘~/tmp/scratch/RtmpZ4rlDA’ ‘~/tmp/scratch/RtmpZIxi2u’   ‘~/tmp/scratch/RtmpZKkoBh’ ‘~/tmp/scratch/RtmpZPmNp9’   ‘~/tmp/scratch/RtmpZyEAys’ ‘~/tmp/scratch/Rtmpa07rh7’   ‘~/tmp/scratch/RtmpbUVGFD’ ‘~/tmp/scratch/RtmpbWBZFV’   ‘~/tmp/scratch/Rtmpc5nOFH’ ‘~/tmp/scratch/RtmpcYQg86’   ‘~/tmp/scratch/Rtmpcr4uXR’ ‘~/tmp/scratch/RtmpcywbAs’   ‘~/tmp/scratch/RtmpdHpDTp’ ‘~/tmp/scratch/RtmpeFIkZG’   ‘~/tmp/scratch/Rtmpee9IEU’ ‘~/tmp/scratch/RtmpfLQqj1’   ‘~/tmp/scratch/Rtmpfoc7G5’ ‘~/tmp/scratch/Rtmpg6TRgh’   ‘~/tmp/scratch/RtmpgNy6i9’ ‘~/tmp/scratch/RtmpgXRLJT’   ‘~/tmp/scratch/Rtmpgmd3yt’ ‘~/tmp/scratch/Rtmph6ihdJ’   ‘~/tmp/scratch/RtmphSi3vB’ ‘~/tmp/scratch/Rtmphg29Fz’   ‘~/tmp/scratch/Rtmphtuaup’ ‘~/tmp/scratch/Rtmpiycvkl’   ‘~/tmp/scratch/Rtmpjfybvy’ ‘~/tmp/scratch/RtmpjvnO7f’   ‘~/tmp/scratch/Rtmpk9SlUF’ ‘~/tmp/scratch/RtmpkFkghX’   ‘~/tmp/scratch/RtmpkQGCNQ’ ‘~/tmp/scratch/RtmplLH1Eo’   ‘~/tmp/scratch/RtmplWpA8S’ ‘~/tmp/scratch/RtmpmCWjLR’   ‘~/tmp/scratch/Rtmpme1IHj’ ‘~/tmp/scratch/RtmpnS99cV’   ‘~/tmp/scratch/RtmpncLAXf’ ‘~/tmp/scratch/RtmpnkSkVA’   ‘~/tmp/scratch/RtmpoVDqxS’ ‘~/tmp/scratch/RtmpprTMEs’   ‘~/tmp/scratch/Rtmpq3DULn’ ‘~/tmp/scratch/RtmpqWsP5r’   ‘~/tmp/scratch/Rtmpqme7Ll’ ‘~/tmp/scratch/RtmprEEvp6’   ‘~/tmp/scratch/RtmprRBBz2’ ‘~/tmp/scratch/RtmpraKpCB’   ‘~/tmp/scratch/Rtmpsf1ktg’ ‘~/tmp/scratch/RtmpsrMye2’   ‘~/tmp/scratch/Rtmpt2vfcr’ ‘~/tmp/scratch/RtmptNNuGS’   ‘~/tmp/scratch/RtmpvfYzIq’ ‘~/tmp/scratch/RtmpwlwBH8’   ‘~/tmp/scratch/Rtmpy7jYLI’ ‘~/tmp/scratch/Rtmpyqb3rD’   ‘~/tmp/scratch/RtmpyxlOLu’ ‘~/tmp/scratch/RtmpzQK9el’   ‘~/tmp/scratch/ccq3Go6A.s’   ‘~/tmp/scratch/quarto-sessione36e1558f8bcb246’   ‘~/tmp/scratch/xvfb-run.0WPVCu’ ‘~/tmp/scratch/xvfb-run.0cAEbX’   ‘~/tmp/scratch/xvfb-run.0lXFpW’ ‘~/tmp/scratch/xvfb-run.1o5Dlp’   ‘~/tmp/scratch/xvfb-run.2DgGyz’ ‘~/tmp/scratch/xvfb-run.2Z0HbJ’   ‘~/tmp/scratch/xvfb-run.4q1ie8’ ‘~/tmp/scratch/xvfb-run.56AwRI’   ‘~/tmp/scratch/xvfb-run.7EJEtX’ ‘~/tmp/scratch/xvfb-run.8B5Lec’   ‘~/tmp/scratch/xvfb-run.8yjxk9’ ‘~/tmp/scratch/xvfb-run.98QwZG’   ‘~/tmp/scratch/xvfb-run.AIaD4q’ ‘~/tmp/scratch/xvfb-run.Cakvgd’   ‘~/tmp/scratch/xvfb-run.CeCOtV’ ‘~/tmp/scratch/xvfb-run.DkeZk3’   ‘~/tmp/scratch/xvfb-run.EkHpUe’ ‘~/tmp/scratch/xvfb-run.FHpekr’   ‘~/tmp/scratch/xvfb-run.FoTYNv’ ‘~/tmp/scratch/xvfb-run.Fywo99’   ‘~/tmp/scratch/xvfb-run.GjDrJl’ ‘~/tmp/scratch/xvfb-run.ID4Sw2’   ‘~/tmp/scratch/xvfb-run.JE1aLu’ ‘~/tmp/scratch/xvfb-run.JivADB’   ‘~/tmp/scratch/xvfb-run.JixeFq’ ‘~/tmp/scratch/xvfb-run.LStwyw’   ‘~/tmp/scratch/xvfb-run.NdgQAQ’ ‘~/tmp/scratch/xvfb-run.OMDWjY’   ‘~/tmp/scratch/xvfb-run.OZPFzK’ ‘~/tmp/scratch/xvfb-run.P0OBev’   ‘~/tmp/scratch/xvfb-run.RLcJU7’ ‘~/tmp/scratch/xvfb-run.SZCSPK’   ‘~/tmp/scratch/xvfb-run.SosLYk’ ‘~/tmp/scratch/xvfb-run.TXyIi6’   ‘~/tmp/scratch/xvfb-run.TfG4W6’ ‘~/tmp/scratch/xvfb-run.UG1McY’   ‘~/tmp/scratch/xvfb-run.VYUPc9’ ‘~/tmp/scratch/xvfb-run.Z8dDTT’   ‘~/tmp/scratch/xvfb-run.ZfUmHs’ ‘~/tmp/scratch/xvfb-run.ZyNFX0’   ‘~/tmp/scratch/xvfb-run.ay9P5C’ ‘~/tmp/scratch/xvfb-run.dFDj4d’   ‘~/tmp/scratch/xvfb-run.dHaeor’ ‘~/tmp/scratch/xvfb-run.dPEPb1’   ‘~/tmp/scratch/xvfb-run.duKLNW’ ‘~/tmp/scratch/xvfb-run.fFlkzd’   ‘~/tmp/scratch/xvfb-run.fFsL2M’ ‘~/tmp/scratch/xvfb-run.fst8kj’   ‘~/tmp/scratch/xvfb-run.fvxzjp’ ‘~/tmp/scratch/xvfb-run.g1Jzdc’   ‘~/tmp/scratch/xvfb-run.gjP9jP’ ‘~/tmp/scratch/xvfb-run.iaxv25’   ‘~/tmp/scratch/xvfb-run.ibxGyC’ ‘~/tmp/scratch/xvfb-run.jYq3B5’   ‘~/tmp/scratch/xvfb-run.jlvxYO’ ‘~/tmp/scratch/xvfb-run.lIcNFw’   ‘~/tmp/scratch/xvfb-run.lJIXr7’ ‘~/tmp/scratch/xvfb-run.mEjbBG’   ‘~/tmp/scratch/xvfb-run.qocRLU’ ‘~/tmp/scratch/xvfb-run.tIY2rj’   ‘~/tmp/scratch/xvfb-run.vWz00R’ ‘~/tmp/scratch/xvfb-run.vpOE3e’   ‘~/tmp/scratch/xvfb-run.wt8ahj’ ‘~/tmp/scratch/xvfb-run.yUCe1s’   ‘~/tmp/scratch/xvfb-run.zaymya’
• DONE

Status: 3 NOTEs