* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘pscl’ ...
** package ‘pscl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCPMRYc/R.INSTALL1527e75f6cc9fe/pscl/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c IDEAL.c -o IDEAL.o
IDEAL.c: In function ‘IDEAL’:
IDEAL.c:31:39: warning: variable ‘sd’ set but not used [-Wunused-but-set-variable]
31 | double **xp, **xpv, *xtemp, *btemp, sd;
| ^~
IDEAL.c:30:58: warning: variable ‘nm_doub’ set but not used [-Wunused-but-set-variable]
30 | double **ystar, **x, **xreg, **y, **beta, **bp, **bpv, nm_doub, iterPerCent;
| ^~~~~~~
IDEAL.c:29:38: warning: variable ‘nm’ set but not used [-Wunused-but-set-variable]
29 | int inloop, **ok, burnin, n, m, d, nm, maxiter, thin, impute, verbose;
| ^~
In file included from /usr/include/stdio.h:906,
from IDEAL.c:2:
In function ‘fprintf’,
inlined from ‘IDEAL’ at IDEAL.c:252:2:
/usr/include/x86_64-linux-gnu/bits/stdio2.h:79:10: warning: ‘ofp’ may be used uninitialized [-Wmaybe-uninitialized]
79 | return __fprintf_chk (__stream, __USE_FORTIFY_LEVEL - 1, __fmt,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
80 | __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~
IDEAL.c: In function ‘IDEAL’:
IDEAL.c:32:9: note: ‘ofp’ was declared here
32 | FILE *ofp;
| ^~~
IDEAL.c:28:10: warning: ‘xocursor’ may be used uninitialized [-Wmaybe-uninitialized]
28 | int e, xocursor, bocursor, xlength, blength, q, iter;
| ^~~~~~~~
IDEAL.c:28:20: warning: ‘bocursor’ may be used uninitialized [-Wmaybe-uninitialized]
28 | int e, xocursor, bocursor, xlength, blength, q, iter;
| ^~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bayesreg.c -o bayesreg.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c check.c -o check.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chol.c -o chol.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crossprod.c -o crossprod.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dmatTOdvec.c -o dmatTOdvec.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dtnorm.c -o dtnorm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dvecTOdmat.c -o dvecTOdmat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gaussj.c -o gaussj.o
gaussj.c: In function ‘gaussj’:
gaussj.c:39:8: warning: ‘icol’ may be used uninitialized [-Wmaybe-uninitialized]
39 | if (irow != icol) {
| ^
gaussj.c:17:9: note: ‘icol’ was declared here
17 | int i,icol,irow,j,k,l,ll;
| ^~~~
gaussj.c:39:8: warning: ‘irow’ may be used uninitialized [-Wmaybe-uninitialized]
39 | if (irow != icol) {
| ^
gaussj.c:17:14: note: ‘irow’ was declared here
17 | int i,icol,irow,j,k,l,ll;
| ^~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c pi.c -o pi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c predict.c -o predict.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c printmat.c -o printmat.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c renormalize.c -o renormalize.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rigamma.c -o rigamma.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rmvnorm.c -o rmvnorm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updateb.c -o updateb.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updatex.c -o updatex.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c updatey.c -o updatey.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xchol.c -o xchol.o
gcc-13 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xreg.c -o xreg.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o pscl.so IDEAL.o bayesreg.o check.o chol.o crossprod.o dmatTOdvec.o dtnorm.o dvecTOdmat.o gaussj.o init.o pi.o predict.o printmat.o renormalize.o rigamma.o rmvnorm.o updateb.o updatex.o updatey.o util.o xchol.o xreg.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCPMRYc/R.INSTALL1527e75f6cc9fe/pscl/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCPMRYc/R.INSTALL1527e75f6cc9fe/pscl/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCPMRYc/R.INSTALL1527e75f6cc9fe/pscl/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-pscl/00new/pscl/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pscl)