• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:03:43 UTC
• checking for file ‘protoclust/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘protoclust’ version ‘1.6.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Jacob Bien <jbien@usc.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Jacob",                       family = "Bien",                       role = c("aut", "cre"),                       email = "jbien@usc.edu"),                person(given = "Rob",                       family = "Tibshirani",                       role = "aut")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘protoclust’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [0s/1s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0AZa4N’ ‘~/tmp/scratch/Rtmp0XQkAM’   ‘~/tmp/scratch/Rtmp0qrmc8’ ‘~/tmp/scratch/Rtmp19ECYx’   ‘~/tmp/scratch/Rtmp1lZgBx’ ‘~/tmp/scratch/Rtmp1yqe9o’   ‘~/tmp/scratch/Rtmp2CmyLd’ ‘~/tmp/scratch/Rtmp2IVfog’   ‘~/tmp/scratch/Rtmp2Ih8NX’ ‘~/tmp/scratch/Rtmp6gfU18’   ‘~/tmp/scratch/Rtmp76KjIq’ ‘~/tmp/scratch/Rtmp7Gpbt9’   ‘~/tmp/scratch/Rtmp7gIGNB’ ‘~/tmp/scratch/Rtmp8syKeX’   ‘~/tmp/scratch/Rtmp9EEDG7’ ‘~/tmp/scratch/RtmpAjILCi’   ‘~/tmp/scratch/RtmpAnFZg1’ ‘~/tmp/scratch/RtmpB3ERuv’   ‘~/tmp/scratch/RtmpB4P63O’ ‘~/tmp/scratch/RtmpBR81Wh’   ‘~/tmp/scratch/RtmpCvVYsX’ ‘~/tmp/scratch/RtmpDKuNMZ’   ‘~/tmp/scratch/RtmpDTUd67’ ‘~/tmp/scratch/RtmpDnch3i’   ‘~/tmp/scratch/RtmpE222o4’ ‘~/tmp/scratch/RtmpEWMgxb’   ‘~/tmp/scratch/RtmpFeSvZE’ ‘~/tmp/scratch/RtmpGOLKXP’   ‘~/tmp/scratch/RtmpGlklDp’ ‘~/tmp/scratch/RtmpH4ggsR’   ‘~/tmp/scratch/RtmpI5Ol2s’ ‘~/tmp/scratch/RtmpIInvpB’   ‘~/tmp/scratch/RtmpIlcp2U’ ‘~/tmp/scratch/RtmpJNeLOV’   ‘~/tmp/scratch/RtmpJSPTSt’ ‘~/tmp/scratch/RtmpJkAPP2’   ‘~/tmp/scratch/RtmpKaLKPi’ ‘~/tmp/scratch/RtmpLBakQH’   ‘~/tmp/scratch/RtmpMBVJwl’ ‘~/tmp/scratch/RtmpMotQt6’   ‘~/tmp/scratch/RtmpONiW6x’ ‘~/tmp/scratch/RtmpOOATBB’   ‘~/tmp/scratch/RtmpOiRN2b’ ‘~/tmp/scratch/RtmpQRqI6S’   ‘~/tmp/scratch/RtmpQhOVXv’ ‘~/tmp/scratch/RtmpQw1x1B’   ‘~/tmp/scratch/RtmpRLSNxH’ ‘~/tmp/scratch/RtmpT4aRs6’   ‘~/tmp/scratch/RtmpTSUjri’ ‘~/tmp/scratch/RtmpTkkOYW’   ‘~/tmp/scratch/RtmpTsM56m’ ‘~/tmp/scratch/RtmpU2vssg’   ‘~/tmp/scratch/RtmpUrY0EQ’ ‘~/tmp/scratch/RtmpVFvG41’   ‘~/tmp/scratch/RtmpVU6Y9g’ ‘~/tmp/scratch/RtmpbxvUpH’   ‘~/tmp/scratch/RtmpcLe0VV’ ‘~/tmp/scratch/RtmpcMsLuP’   ‘~/tmp/scratch/Rtmpcw6FVJ’ ‘~/tmp/scratch/RtmpdCJOFz’   ‘~/tmp/scratch/RtmpdD7Rys’ ‘~/tmp/scratch/RtmpenX3vb’   ‘~/tmp/scratch/RtmpfFREQr’ ‘~/tmp/scratch/RtmpglDBgJ’   ‘~/tmp/scratch/RtmphM1yx2’ ‘~/tmp/scratch/Rtmphdq1bl’   ‘~/tmp/scratch/Rtmpih2VqP’ ‘~/tmp/scratch/RtmpjehAji’   ‘~/tmp/scratch/RtmpkAk4w3’ ‘~/tmp/scratch/RtmpkIvhZJ’   ‘~/tmp/scratch/RtmplKGyMo’ ‘~/tmp/scratch/RtmplYirjD’   ‘~/tmp/scratch/RtmpmGnfR6’ ‘~/tmp/scratch/RtmpmVUrTx’   ‘~/tmp/scratch/RtmpnZUVaA’ ‘~/tmp/scratch/Rtmpnvl5g9’   ‘~/tmp/scratch/RtmpojCB5A’ ‘~/tmp/scratch/RtmppWhpCR’   ‘~/tmp/scratch/RtmppkaOTe’ ‘~/tmp/scratch/RtmpqKH8aT’   ‘~/tmp/scratch/RtmpqoszwO’ ‘~/tmp/scratch/Rtmpr7pqF6’   ‘~/tmp/scratch/RtmptPNv1M’ ‘~/tmp/scratch/RtmpuFtt9I’   ‘~/tmp/scratch/RtmpuOAnQK’ ‘~/tmp/scratch/RtmpuqBNrX’   ‘~/tmp/scratch/Rtmpv0rk8x’ ‘~/tmp/scratch/Rtmpv1zB7e’   ‘~/tmp/scratch/RtmpwSEc9v’ ‘~/tmp/scratch/Rtmpwi369x’   ‘~/tmp/scratch/RtmpyFGTRo’ ‘~/tmp/scratch/RtmpyNoi2v’   ‘~/tmp/scratch/Rtmpygz8kP’ ‘~/tmp/scratch/RtmpyjQVIh’   ‘~/tmp/scratch/Rtmpz4O1Bt’ ‘~/tmp/scratch/Rtmpz86MTf’   ‘~/tmp/scratch/RtmpzHLhVq’ ‘~/tmp/scratch/xvfb-run.2FJkb1’   ‘~/tmp/scratch/xvfb-run.4lYGf3’ ‘~/tmp/scratch/xvfb-run.5gMtNA’   ‘~/tmp/scratch/xvfb-run.6ngeYt’ ‘~/tmp/scratch/xvfb-run.7k9ETK’   ‘~/tmp/scratch/xvfb-run.7mS4AQ’ ‘~/tmp/scratch/xvfb-run.AFkRw8’   ‘~/tmp/scratch/xvfb-run.DQDAGl’ ‘~/tmp/scratch/xvfb-run.ErBPwy’   ‘~/tmp/scratch/xvfb-run.GDrWRk’ ‘~/tmp/scratch/xvfb-run.H1dNPz’   ‘~/tmp/scratch/xvfb-run.LnRBuJ’ ‘~/tmp/scratch/xvfb-run.MpRH1b’   ‘~/tmp/scratch/xvfb-run.QJObeK’ ‘~/tmp/scratch/xvfb-run.STFgld’   ‘~/tmp/scratch/xvfb-run.SxPiQ0’ ‘~/tmp/scratch/xvfb-run.TbmdVw’   ‘~/tmp/scratch/xvfb-run.VAvPA6’ ‘~/tmp/scratch/xvfb-run.VbP9Ro’   ‘~/tmp/scratch/xvfb-run.b9smAX’ ‘~/tmp/scratch/xvfb-run.cB5rtA’   ‘~/tmp/scratch/xvfb-run.j481tE’ ‘~/tmp/scratch/xvfb-run.kUqCH6’   ‘~/tmp/scratch/xvfb-run.qsBzTU’ ‘~/tmp/scratch/xvfb-run.vMtnSv’
• DONE

Status: 2 NOTEs