• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 17:03:17 UTC
• checking for file ‘protein8k/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘protein8k’ version ‘0.0.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘protein8k’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... NONE
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [23s/27s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Ocpig’ ‘~/tmp/scratch/Rtmp0Oh1HG’   ‘~/tmp/scratch/Rtmp1CVjEf’ ‘~/tmp/scratch/Rtmp1ezzdv’   ‘~/tmp/scratch/Rtmp2Ez5Hl’ ‘~/tmp/scratch/Rtmp2F0OE8’   ‘~/tmp/scratch/Rtmp3FaGd1’ ‘~/tmp/scratch/Rtmp3OqfXp’   ‘~/tmp/scratch/Rtmp3VfiHc’ ‘~/tmp/scratch/Rtmp4sLylP’   ‘~/tmp/scratch/Rtmp5oe8hU’ ‘~/tmp/scratch/Rtmp7MVFFy’   ‘~/tmp/scratch/Rtmp7TGvdw’ ‘~/tmp/scratch/Rtmp7WnNaR’   ‘~/tmp/scratch/Rtmp9JWj47’ ‘~/tmp/scratch/Rtmp9W4PlW’   ‘~/tmp/scratch/Rtmp9cFtpy’ ‘~/tmp/scratch/Rtmp9y4A13’   ‘~/tmp/scratch/Rtmp9z8ihB’ ‘~/tmp/scratch/RtmpA5pvEy’   ‘~/tmp/scratch/RtmpB5cbbK’ ‘~/tmp/scratch/RtmpBAeCAy’   ‘~/tmp/scratch/RtmpBCbtCV’ ‘~/tmp/scratch/RtmpCFs4Nf’   ‘~/tmp/scratch/RtmpCMGgdL’ ‘~/tmp/scratch/RtmpCfNMCI’   ‘~/tmp/scratch/RtmpCv7o5E’ ‘~/tmp/scratch/RtmpDi6VDn’   ‘~/tmp/scratch/RtmpEb0otN’ ‘~/tmp/scratch/RtmpF247QW’   ‘~/tmp/scratch/RtmpFgpx0o’ ‘~/tmp/scratch/RtmpG08Bt1’   ‘~/tmp/scratch/RtmpGxmDt7’ ‘~/tmp/scratch/RtmpI3Ious’   ‘~/tmp/scratch/RtmpJ4NBwC’ ‘~/tmp/scratch/RtmpJJ3uGn’   ‘~/tmp/scratch/RtmpKUAN08’ ‘~/tmp/scratch/RtmpLliA7k’   ‘~/tmp/scratch/RtmpMOUmzC’ ‘~/tmp/scratch/RtmpMhWou6’   ‘~/tmp/scratch/RtmpN4dMAK’ ‘~/tmp/scratch/RtmpNJNxW8’   ‘~/tmp/scratch/RtmpOFZedH’ ‘~/tmp/scratch/RtmpOPh3p8’   ‘~/tmp/scratch/RtmpOk2DE3’ ‘~/tmp/scratch/RtmpP9DefS’   ‘~/tmp/scratch/RtmpPF95MF’ ‘~/tmp/scratch/RtmpPTyXtv’   ‘~/tmp/scratch/RtmpQ0Q80n’ ‘~/tmp/scratch/RtmpQAR4No’   ‘~/tmp/scratch/RtmpRRPWBE’ ‘~/tmp/scratch/RtmpRZUhDD’   ‘~/tmp/scratch/RtmpRf7WWM’ ‘~/tmp/scratch/RtmpRhbswz’   ‘~/tmp/scratch/RtmpT1pSWo’ ‘~/tmp/scratch/RtmpT3Lil9’   ‘~/tmp/scratch/RtmpT5TYlH’ ‘~/tmp/scratch/RtmpV7Nxd6’   ‘~/tmp/scratch/RtmpVEfLoF’ ‘~/tmp/scratch/RtmpVUfJHc’   ‘~/tmp/scratch/RtmpW4EeJ8’ ‘~/tmp/scratch/RtmpWzmdJO’   ‘~/tmp/scratch/RtmpXOyts2’ ‘~/tmp/scratch/RtmpYWKHmD’   ‘~/tmp/scratch/RtmpYa7CPp’ ‘~/tmp/scratch/RtmpYvvA84’   ‘~/tmp/scratch/RtmpZ0FjLC’ ‘~/tmp/scratch/RtmpZUdMMH’   ‘~/tmp/scratch/RtmpZxQVvN’ ‘~/tmp/scratch/RtmpaCOFJD’   ‘~/tmp/scratch/RtmpbohozL’ ‘~/tmp/scratch/RtmpdV7x4I’   ‘~/tmp/scratch/RtmpfC1H2T’ ‘~/tmp/scratch/RtmpfW4nqx’   ‘~/tmp/scratch/Rtmpfw2LPR’ ‘~/tmp/scratch/Rtmpg0g1t0’   ‘~/tmp/scratch/RtmpgDPOT4’ ‘~/tmp/scratch/Rtmpi7ygsC’   ‘~/tmp/scratch/RtmpiQvVq7’ ‘~/tmp/scratch/RtmpjwPklM’   ‘~/tmp/scratch/RtmpkRYMaO’ ‘~/tmp/scratch/RtmpkiBTgv’   ‘~/tmp/scratch/RtmpkvsZlU’ ‘~/tmp/scratch/RtmplcTM5J’   ‘~/tmp/scratch/RtmpmGwJRn’ ‘~/tmp/scratch/Rtmpn2sR50’   ‘~/tmp/scratch/RtmpnYDINL’ ‘~/tmp/scratch/RtmpnvlMMR’   ‘~/tmp/scratch/RtmpoK2XBf’ ‘~/tmp/scratch/Rtmpq3yRfY’   ‘~/tmp/scratch/RtmpqJ4JUi’ ‘~/tmp/scratch/RtmpqYjSve’   ‘~/tmp/scratch/RtmpqlsVK4’ ‘~/tmp/scratch/Rtmpqm9dst’   ‘~/tmp/scratch/Rtmpqr4tNs’ ‘~/tmp/scratch/Rtmpr9G5YI’   ‘~/tmp/scratch/RtmprF6WPy’ ‘~/tmp/scratch/RtmprJCG1z’   ‘~/tmp/scratch/RtmpttncAy’ ‘~/tmp/scratch/Rtmpu3ocJs’   ‘~/tmp/scratch/Rtmpu7p9b5’ ‘~/tmp/scratch/RtmpuZnfRr’   ‘~/tmp/scratch/Rtmpv1CLuJ’ ‘~/tmp/scratch/RtmpwS3ojb’   ‘~/tmp/scratch/RtmpxAbBwP’ ‘~/tmp/scratch/RtmpxuWG94’   ‘~/tmp/scratch/Rtmpy5RRdB’ ‘~/tmp/scratch/RtmpymdV7s’   ‘~/tmp/scratch/Rtmpz1z0OA’ ‘~/tmp/scratch/RtmpzCRMqg’   ‘~/tmp/scratch/RtmpzEmXcU’ ‘~/tmp/scratch/Rtmpzw4uYh’   ‘~/tmp/scratch/xvfb-run.2r6aSZ’ ‘~/tmp/scratch/xvfb-run.3ysFa6’   ‘~/tmp/scratch/xvfb-run.5PizMe’ ‘~/tmp/scratch/xvfb-run.8LbWiQ’   ‘~/tmp/scratch/xvfb-run.8r6Lin’ ‘~/tmp/scratch/xvfb-run.8xPDuj’   ‘~/tmp/scratch/xvfb-run.90a2pR’ ‘~/tmp/scratch/xvfb-run.9TaXHZ’   ‘~/tmp/scratch/xvfb-run.Ah9dwN’ ‘~/tmp/scratch/xvfb-run.Ed3NY1’   ‘~/tmp/scratch/xvfb-run.GYH3YK’ ‘~/tmp/scratch/xvfb-run.L0rSFa’   ‘~/tmp/scratch/xvfb-run.NfNQuo’ ‘~/tmp/scratch/xvfb-run.PNrsII’   ‘~/tmp/scratch/xvfb-run.Pee7Ju’ ‘~/tmp/scratch/xvfb-run.Rfb62R’   ‘~/tmp/scratch/xvfb-run.Ssy7Ex’ ‘~/tmp/scratch/xvfb-run.V1f8As’   ‘~/tmp/scratch/xvfb-run.Y9o62I’ ‘~/tmp/scratch/xvfb-run.aRVzmN’   ‘~/tmp/scratch/xvfb-run.aYgeB0’ ‘~/tmp/scratch/xvfb-run.bEXll8’   ‘~/tmp/scratch/xvfb-run.bUTP4Z’ ‘~/tmp/scratch/xvfb-run.ckFwDm’   ‘~/tmp/scratch/xvfb-run.g6lMCd’ ‘~/tmp/scratch/xvfb-run.hgaRB1’   ‘~/tmp/scratch/xvfb-run.kyWk00’ ‘~/tmp/scratch/xvfb-run.lMrVyO’   ‘~/tmp/scratch/xvfb-run.lbUtBa’ ‘~/tmp/scratch/xvfb-run.qBjB5j’   ‘~/tmp/scratch/xvfb-run.rZZOqm’ ‘~/tmp/scratch/xvfb-run.sKsJsl’   ‘~/tmp/scratch/xvfb-run.uH8G8k’ ‘~/tmp/scratch/xvfb-run.uYCACF’   ‘~/tmp/scratch/xvfb-run.vuUz1V’ ‘~/tmp/scratch/xvfb-run.wKBtri’   ‘~/tmp/scratch/xvfb-run.xkfN7k’ ‘~/tmp/scratch/xvfb-run.y3NHES’   ‘~/tmp/scratch/xvfb-run.yT6VwO’
• DONE

Status: 1 NOTE