• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 17:01:48 UTC
• checking for file ‘primerTree/DESCRIPTION’ ... OK
• this is package ‘primerTree’ version ‘1.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘primerTree’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/12s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [11s/12s] OK Examples with CPU (user + system) or elapsed time > 5s                  user system elapsed plot_tree_ranks 4.762 0.109 5.256
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0qfQPt’ ‘~/tmp/scratch/Rtmp19i1zn’   ‘~/tmp/scratch/Rtmp1G76i7’ ‘~/tmp/scratch/Rtmp1RGrN7’   ‘~/tmp/scratch/Rtmp1xq8cq’ ‘~/tmp/scratch/Rtmp2LxtcF’   ‘~/tmp/scratch/Rtmp3NRFNI’ ‘~/tmp/scratch/Rtmp3XRV6r’   ‘~/tmp/scratch/Rtmp3p6y2Y’ ‘~/tmp/scratch/Rtmp3t7v3q’   ‘~/tmp/scratch/Rtmp4tDUin’ ‘~/tmp/scratch/Rtmp5BGkRy’   ‘~/tmp/scratch/Rtmp5Fo04x’ ‘~/tmp/scratch/Rtmp5MPNA0’   ‘~/tmp/scratch/Rtmp5yLmzE’ ‘~/tmp/scratch/Rtmp6FL5US’   ‘~/tmp/scratch/Rtmp6h9uHb’ ‘~/tmp/scratch/Rtmp7Ej2NW’   ‘~/tmp/scratch/Rtmp7MAtrz’ ‘~/tmp/scratch/Rtmp8Hxtsc’   ‘~/tmp/scratch/Rtmp9OePZB’ ‘~/tmp/scratch/RtmpAM3vpn’   ‘~/tmp/scratch/RtmpAjiOSv’ ‘~/tmp/scratch/RtmpBwnAwB’   ‘~/tmp/scratch/RtmpCMPtsb’ ‘~/tmp/scratch/RtmpCWFmqd’   ‘~/tmp/scratch/RtmpExNJxW’ ‘~/tmp/scratch/RtmpF5MCQe’   ‘~/tmp/scratch/RtmpFXbRAe’ ‘~/tmp/scratch/RtmpFdExF5’   ‘~/tmp/scratch/RtmpFgfHwj’ ‘~/tmp/scratch/RtmpGHzcYl’   ‘~/tmp/scratch/RtmpGeNo0q’ ‘~/tmp/scratch/RtmpHNbVmb’   ‘~/tmp/scratch/RtmpHWADEl’ ‘~/tmp/scratch/RtmpHcyIy1’   ‘~/tmp/scratch/RtmpHw5fln’ ‘~/tmp/scratch/RtmpI5dpKt’   ‘~/tmp/scratch/RtmpIJlrFa’ ‘~/tmp/scratch/RtmpIyws7k’   ‘~/tmp/scratch/RtmpJFDkCA’ ‘~/tmp/scratch/RtmpJRPct0’   ‘~/tmp/scratch/RtmpL3DZlG’ ‘~/tmp/scratch/RtmpM1eJxx’   ‘~/tmp/scratch/RtmpMDVFTp’ ‘~/tmp/scratch/RtmpMDohn7’   ‘~/tmp/scratch/RtmpMfNleX’ ‘~/tmp/scratch/RtmpMlejtN’   ‘~/tmp/scratch/RtmpN2XMdF’ ‘~/tmp/scratch/RtmpNTKPZU’   ‘~/tmp/scratch/RtmpNxKVg8’ ‘~/tmp/scratch/RtmpOBzV7B’   ‘~/tmp/scratch/RtmpPshKha’ ‘~/tmp/scratch/RtmpQS0uR0’   ‘~/tmp/scratch/RtmpQbW1r3’ ‘~/tmp/scratch/RtmpR01rmK’   ‘~/tmp/scratch/RtmpRBwEa2’ ‘~/tmp/scratch/RtmpSgpsOe’   ‘~/tmp/scratch/RtmpSkrjym’ ‘~/tmp/scratch/RtmpT8TrI1’   ‘~/tmp/scratch/RtmpTNNZSa’ ‘~/tmp/scratch/RtmpTQvvkH’   ‘~/tmp/scratch/RtmpU9NYfc’ ‘~/tmp/scratch/RtmpUFMiB3’   ‘~/tmp/scratch/RtmpUOqAjN’ ‘~/tmp/scratch/RtmpUSqsZq’   ‘~/tmp/scratch/RtmpUvOKlY’ ‘~/tmp/scratch/RtmpVKASLS’   ‘~/tmp/scratch/RtmpVkI4Yd’ ‘~/tmp/scratch/RtmpWPVQ7O’   ‘~/tmp/scratch/RtmpWpFZqI’ ‘~/tmp/scratch/RtmpX5g4JJ’   ‘~/tmp/scratch/RtmpXaiZmz’ ‘~/tmp/scratch/RtmpYWZ2U9’   ‘~/tmp/scratch/RtmpYpIs0L’ ‘~/tmp/scratch/RtmpZJxVQy’   ‘~/tmp/scratch/RtmpbyXHwD’ ‘~/tmp/scratch/RtmpcHjH8j’   ‘~/tmp/scratch/RtmpcVPOdY’ ‘~/tmp/scratch/RtmpcWDB59’   ‘~/tmp/scratch/Rtmpca6b1P’ ‘~/tmp/scratch/RtmpduSxtS’   ‘~/tmp/scratch/Rtmpf456bd’ ‘~/tmp/scratch/RtmpfKeV3C’   ‘~/tmp/scratch/RtmpgAoIgF’ ‘~/tmp/scratch/RtmphPx4wV’   ‘~/tmp/scratch/RtmphU0aNM’ ‘~/tmp/scratch/RtmpiKh6sY’   ‘~/tmp/scratch/RtmpiPfmA8’ ‘~/tmp/scratch/RtmpikMIgm’   ‘~/tmp/scratch/RtmpixLMKA’ ‘~/tmp/scratch/RtmpjMp028’   ‘~/tmp/scratch/RtmpjpcWgS’ ‘~/tmp/scratch/RtmpjtmwnF’   ‘~/tmp/scratch/Rtmpk9YuDc’ ‘~/tmp/scratch/RtmpkWGy57’   ‘~/tmp/scratch/RtmpkrDaTK’ ‘~/tmp/scratch/RtmpkrrKLc’   ‘~/tmp/scratch/Rtmpm1GPij’ ‘~/tmp/scratch/RtmpmI1sng’   ‘~/tmp/scratch/RtmpnMtshP’ ‘~/tmp/scratch/Rtmpo8tCoC’   ‘~/tmp/scratch/RtmpofNgBD’ ‘~/tmp/scratch/RtmpouPyU6’   ‘~/tmp/scratch/Rtmpp46DEJ’ ‘~/tmp/scratch/RtmppCPi1G’   ‘~/tmp/scratch/RtmpqXqcWO’ ‘~/tmp/scratch/Rtmpqy1KDx’   ‘~/tmp/scratch/RtmprBFbEp’ ‘~/tmp/scratch/RtmprZNdf6’   ‘~/tmp/scratch/RtmprmtdyE’ ‘~/tmp/scratch/Rtmps1Y9L1’   ‘~/tmp/scratch/RtmpsTTbAE’ ‘~/tmp/scratch/RtmpsXMEAK’   ‘~/tmp/scratch/RtmpssVk3Y’ ‘~/tmp/scratch/Rtmpsx6q8Z’   ‘~/tmp/scratch/Rtmpt2U2Ng’ ‘~/tmp/scratch/Rtmpt7kcbZ’   ‘~/tmp/scratch/RtmptpOy9K’ ‘~/tmp/scratch/Rtmptzr7kT’   ‘~/tmp/scratch/Rtmpu1s2jc’ ‘~/tmp/scratch/RtmpuWG3et’   ‘~/tmp/scratch/Rtmpuc7WcE’ ‘~/tmp/scratch/Rtmpun4ALP’   ‘~/tmp/scratch/RtmpvGdXdn’ ‘~/tmp/scratch/RtmpvqOBIL’   ‘~/tmp/scratch/RtmpwTw6JK’ ‘~/tmp/scratch/RtmpwUuxDL’   ‘~/tmp/scratch/RtmpwfhyNC’ ‘~/tmp/scratch/RtmpwoWqsF’   ‘~/tmp/scratch/RtmpwqDkcY’ ‘~/tmp/scratch/RtmpxQVyem’   ‘~/tmp/scratch/RtmpxV8mIJ’ ‘~/tmp/scratch/RtmpxtkfR0’   ‘~/tmp/scratch/RtmpxuryAl’ ‘~/tmp/scratch/RtmpyNBFoZ’   ‘~/tmp/scratch/RtmpzN4JSy’ ‘~/tmp/scratch/RtmpzTwTva’   ‘~/tmp/scratch/xvfb-run.0Aazx7’ ‘~/tmp/scratch/xvfb-run.0k5mGq’   ‘~/tmp/scratch/xvfb-run.0uy67V’ ‘~/tmp/scratch/xvfb-run.1pvF4F’   ‘~/tmp/scratch/xvfb-run.1uu6LE’ ‘~/tmp/scratch/xvfb-run.20WNGc’   ‘~/tmp/scratch/xvfb-run.2CrQUY’ ‘~/tmp/scratch/xvfb-run.2L1kfw’   ‘~/tmp/scratch/xvfb-run.2ZS2wP’ ‘~/tmp/scratch/xvfb-run.2wiQpQ’   ‘~/tmp/scratch/xvfb-run.6fgLl2’ ‘~/tmp/scratch/xvfb-run.7Q3X4O’   ‘~/tmp/scratch/xvfb-run.8sin8v’ ‘~/tmp/scratch/xvfb-run.9nfyAF’   ‘~/tmp/scratch/xvfb-run.9rtAOc’ ‘~/tmp/scratch/xvfb-run.AZNV4z’   ‘~/tmp/scratch/xvfb-run.Ddd9kR’ ‘~/tmp/scratch/xvfb-run.DeG1UG’   ‘~/tmp/scratch/xvfb-run.Dgs8SO’ ‘~/tmp/scratch/xvfb-run.FSnH6R’   ‘~/tmp/scratch/xvfb-run.G9wS2v’ ‘~/tmp/scratch/xvfb-run.GrfX5q’   ‘~/tmp/scratch/xvfb-run.I12SE1’ ‘~/tmp/scratch/xvfb-run.LNvHPa’   ‘~/tmp/scratch/xvfb-run.LXDdmA’ ‘~/tmp/scratch/xvfb-run.Njo7YB’   ‘~/tmp/scratch/xvfb-run.QjlV4v’ ‘~/tmp/scratch/xvfb-run.SzvipM’   ‘~/tmp/scratch/xvfb-run.TKaaSL’ ‘~/tmp/scratch/xvfb-run.TcN67k’   ‘~/tmp/scratch/xvfb-run.U9lHZL’ ‘~/tmp/scratch/xvfb-run.WpNMXZ’   ‘~/tmp/scratch/xvfb-run.XHQ6hD’ ‘~/tmp/scratch/xvfb-run.Ye7CJ9’   ‘~/tmp/scratch/xvfb-run.Zwmu44’ ‘~/tmp/scratch/xvfb-run.a7EaFz’   ‘~/tmp/scratch/xvfb-run.ca3bbh’ ‘~/tmp/scratch/xvfb-run.ceH2Jc’   ‘~/tmp/scratch/xvfb-run.cvYS0q’ ‘~/tmp/scratch/xvfb-run.dDqeHH’   ‘~/tmp/scratch/xvfb-run.e2dUM8’ ‘~/tmp/scratch/xvfb-run.jQSPSU’   ‘~/tmp/scratch/xvfb-run.jYkdwB’ ‘~/tmp/scratch/xvfb-run.oLZiQd’   ‘~/tmp/scratch/xvfb-run.oMr83B’ ‘~/tmp/scratch/xvfb-run.pCvL0m’   ‘~/tmp/scratch/xvfb-run.s58K7g’ ‘~/tmp/scratch/xvfb-run.t4sIpg’   ‘~/tmp/scratch/xvfb-run.teUF0P’ ‘~/tmp/scratch/xvfb-run.uNfqzk’   ‘~/tmp/scratch/xvfb-run.uc0TEd’ ‘~/tmp/scratch/xvfb-run.wfcZH5’   ‘~/tmp/scratch/xvfb-run.zrgwgr’ ‘~/tmp/scratch/xvfb-run.ztcPnb’
• DONE

Status: 1 NOTE