• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘preputils/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘preputils’ version ‘1.0.3’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Josef Frank <josef.frank@gmx.ch>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Josef",                     family = "Frank",                     role = c("aut", "cre"),                     email = "josef.frank@gmx.ch") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘preputils’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/4s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking examples ... [0s/1s] ERROR Running examples in ‘preputils-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: fillmap > ### Title: Supplement missing values in mapping of data > ### Aliases: fillmap > > ### ** Examples > > library(data.table) Attaching package: ‘data.table’ The following object is masked from ‘package:base’:     %notin% > pheno1 <- data.frame(id1=c(1,2,3,4),id2=c(11,22,NA,NA),phenodat=c(NA,NA,NA,"d")) > pheno2 <- data.frame(id1=c(NA,NA,NA),id2=c(11,22,33),phenodat=c("a","b","c")) > pheno3 <- data.frame(id1=c(4,3),id2=c(44,33),phenodat=c(NA,NA)) > phenoges <- rbind(rbind(pheno1,pheno2),pheno3) > with(phenoges,fillmap(id1,phenodat)) Error in `[.data.table`(dt1, , `:=`(nx, .N), by = x) :   attempt access index 2/2 in VECTOR_ELT Calls: with ... with.default -> eval -> eval -> fillmap -> [ -> [.data.table Execution halted
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 NOTE