- using R Under development (unstable) (2023-12-07 r85661)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.2.0-7) 13.2.0
GNU Fortran (Debian 13.2.0-7) 13.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘popbio/DESCRIPTION’ ... OK
- this is package ‘popbio’ version ‘2.7’
- package encoding: UTF-8
- checking package namespace information ... NOTE
Found export directive that requires package ‘methods’:
‘exportClasses’
Remove all such namespace directives (if obsolete) or ensure that the
DESCRIPTION Depends or Imports field contains ‘methods’.
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘popbio’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/17s] OK
- checking Rd files ... [1s/1s] NOTE
checkRd: (-1) Kendall.Rd:12-13: Lost braces
12 | \item{rates}{a}{matrix or dataframe with four columns: Rate identifier, Year,
| ^
checkRd: (-1) Kendall.Rd:15: Lost braces
15 | \item{grades}{number}{of different levels of means and variances to try, default is 1000}
| ^
checkRd: (-1) Kendall.Rd:17-18: Lost braces
17 | \item{maxvar}{maximum}{variance to search over, default is 0.20. The maximum
| ^
checkRd: (-1) Kendall.Rd:20: Lost braces
20 | \item{minvar}{minimum}{variance to search, default is 0.00001}
| ^
checkRd: (-1) Kendall.Rd:22: Lost braces
22 | \item{maxmean}{maximum}{limit on the mean values to search, default 1}
| ^
checkRd: (-1) Kendall.Rd:24: Lost braces
24 | \item{minmean}{minimum}{limit on the mean values to search, default 0.01}
| ^
checkRd: (-1) Kendall.Rd:73: Escaped LaTeX specials: \&
checkRd: (-1) countCDFxt.Rd:63: Escaped LaTeX specials: \&
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [13s/20s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
vitalsim 5.28 0.051 8.07
- checking PDF version of manual ... [7s/15s] OK
- checking HTML version of manual ... [3s/7s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 2 NOTEs