• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 16:56:24 UTC
• checking for file ‘popEpi/DESCRIPTION’ ... OK
• this is package ‘popEpi’ version ‘0.5.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/4s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘popEpi’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [30s/37s] NOTE Found calls to structure() using deprecated special names:   popEpi/tests/testthat/test_epi.R (.Names: 1) '.Names' should be changed to 'names'.
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [14s/14s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [78s/75s] OK   Running ‘testthat.R’ [78s/75s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [35s/36s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [3s/3s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0QwFgn’ ‘~/tmp/scratch/Rtmp0na7lV’   ‘~/tmp/scratch/Rtmp0wBFip’ ‘~/tmp/scratch/Rtmp0ynnhN’   ‘~/tmp/scratch/Rtmp0zKIuO’ ‘~/tmp/scratch/Rtmp11utx2’   ‘~/tmp/scratch/Rtmp1BfFos’ ‘~/tmp/scratch/Rtmp1PtnFF’   ‘~/tmp/scratch/Rtmp1TazKH’ ‘~/tmp/scratch/Rtmp1cxJwg’   ‘~/tmp/scratch/Rtmp1psvqN’ ‘~/tmp/scratch/Rtmp28yke9’   ‘~/tmp/scratch/Rtmp2DVE7R’ ‘~/tmp/scratch/Rtmp2GvJf3’   ‘~/tmp/scratch/Rtmp3Ae4W8’ ‘~/tmp/scratch/Rtmp3QQf4z’   ‘~/tmp/scratch/Rtmp3QYWPK’ ‘~/tmp/scratch/Rtmp3VZXp6’   ‘~/tmp/scratch/Rtmp3Xwd8A’ ‘~/tmp/scratch/Rtmp4Pcxyb’   ‘~/tmp/scratch/Rtmp4kCveT’ ‘~/tmp/scratch/Rtmp57ZFqk’   ‘~/tmp/scratch/Rtmp57dR6r’ ‘~/tmp/scratch/Rtmp5nb4ET’   ‘~/tmp/scratch/Rtmp5zYeyd’ ‘~/tmp/scratch/Rtmp7QEJE8’   ‘~/tmp/scratch/Rtmp7cfP11’ ‘~/tmp/scratch/Rtmp7oYTO1’   ‘~/tmp/scratch/Rtmp7rip3X’ ‘~/tmp/scratch/Rtmp8Y35sP’   ‘~/tmp/scratch/Rtmp8lkYJG’ ‘~/tmp/scratch/Rtmp9d4zlN’   ‘~/tmp/scratch/Rtmp9y1KlP’ ‘~/tmp/scratch/RtmpArQXLb’   ‘~/tmp/scratch/RtmpBIdizn’ ‘~/tmp/scratch/RtmpBa4P5R’   ‘~/tmp/scratch/RtmpBfjKMx’ ‘~/tmp/scratch/RtmpCOlrnu’   ‘~/tmp/scratch/RtmpCbik5N’ ‘~/tmp/scratch/RtmpChNmUk’   ‘~/tmp/scratch/RtmpCynwRv’ ‘~/tmp/scratch/RtmpDEudhr’   ‘~/tmp/scratch/RtmpDRqLJS’ ‘~/tmp/scratch/RtmpDohfAj’   ‘~/tmp/scratch/RtmpEO9zeg’ ‘~/tmp/scratch/RtmpEOBqQa’   ‘~/tmp/scratch/RtmpEQ8cgi’ ‘~/tmp/scratch/RtmpFuyB61’   ‘~/tmp/scratch/RtmpGR2gKU’ ‘~/tmp/scratch/RtmpGuoqqM’   ‘~/tmp/scratch/RtmpGx2qr1’ ‘~/tmp/scratch/RtmpIMpAqz’   ‘~/tmp/scratch/RtmpIYlZ1N’ ‘~/tmp/scratch/RtmpJqRgL4’   ‘~/tmp/scratch/RtmpKBYg88’ ‘~/tmp/scratch/RtmpKKx78F’   ‘~/tmp/scratch/RtmpKzGKc9’ ‘~/tmp/scratch/RtmpLNnBDy’   ‘~/tmp/scratch/RtmpLeY0uR’ ‘~/tmp/scratch/RtmpLmFPC2’   ‘~/tmp/scratch/RtmpMC5Ii8’ ‘~/tmp/scratch/RtmpMQYLdJ’   ‘~/tmp/scratch/RtmpMjV3WJ’ ‘~/tmp/scratch/RtmpNPX0F5’   ‘~/tmp/scratch/RtmpNZHbSX’ ‘~/tmp/scratch/RtmpNmYRDx’   ‘~/tmp/scratch/RtmpNxqk5l’ ‘~/tmp/scratch/RtmpODbu60’   ‘~/tmp/scratch/RtmpObzNKm’ ‘~/tmp/scratch/RtmpPW27ke’   ‘~/tmp/scratch/RtmpPyJ4lv’ ‘~/tmp/scratch/RtmpQioBMs’   ‘~/tmp/scratch/RtmpQwUjSx’ ‘~/tmp/scratch/RtmpSVnt2D’   ‘~/tmp/scratch/RtmpSW1nef’ ‘~/tmp/scratch/RtmpTuAeIH’   ‘~/tmp/scratch/RtmpUFhZmf’ ‘~/tmp/scratch/RtmpUP9wmd’   ‘~/tmp/scratch/RtmpUfA1T9’ ‘~/tmp/scratch/RtmpUvVg8e’   ‘~/tmp/scratch/RtmpUycEdI’ ‘~/tmp/scratch/RtmpVMy1z2’   ‘~/tmp/scratch/RtmpVQKZtm’ ‘~/tmp/scratch/RtmpVRlzNr’   ‘~/tmp/scratch/RtmpVmnHPo’ ‘~/tmp/scratch/RtmpX0JTCM’   ‘~/tmp/scratch/RtmpXSg3Ao’ ‘~/tmp/scratch/RtmpXZyJTJ’   ‘~/tmp/scratch/RtmpXqMUdk’ ‘~/tmp/scratch/RtmpXrGlZc’   ‘~/tmp/scratch/RtmpY2NMrR’ ‘~/tmp/scratch/RtmpYXg15u’   ‘~/tmp/scratch/RtmpZEDqiP’ ‘~/tmp/scratch/RtmpZUqREY’   ‘~/tmp/scratch/RtmpZWEZJt’ ‘~/tmp/scratch/RtmpZjDn6W’   ‘~/tmp/scratch/RtmpZkHzWd’ ‘~/tmp/scratch/RtmpZynmOD’   ‘~/tmp/scratch/Rtmpaco6LJ’ ‘~/tmp/scratch/Rtmpb0UCkk’   ‘~/tmp/scratch/RtmpbuP5ht’ ‘~/tmp/scratch/Rtmpc4Y0f3’   ‘~/tmp/scratch/Rtmpc6STQF’ ‘~/tmp/scratch/RtmpcBo0Dm’   ‘~/tmp/scratch/RtmpcSN4hV’ ‘~/tmp/scratch/RtmpcT9xHF’   ‘~/tmp/scratch/RtmpcmfRXw’ ‘~/tmp/scratch/RtmpdCPQrX’   ‘~/tmp/scratch/RtmpdlClXT’ ‘~/tmp/scratch/Rtmpe1XsFO’   ‘~/tmp/scratch/RtmpePldeb’ ‘~/tmp/scratch/RtmpeQt0MS’   ‘~/tmp/scratch/RtmpfADz3Q’ ‘~/tmp/scratch/RtmpfAer0B’   ‘~/tmp/scratch/RtmpfEf2rB’ ‘~/tmp/scratch/RtmpgEi0YC’   ‘~/tmp/scratch/RtmpgaKhvg’ ‘~/tmp/scratch/RtmpiLrkb4’   ‘~/tmp/scratch/RtmpiUHavT’ ‘~/tmp/scratch/RtmpiXpNnH’   ‘~/tmp/scratch/RtmpihkBOZ’ ‘~/tmp/scratch/RtmpjIdoXg’   ‘~/tmp/scratch/RtmpjPtvws’ ‘~/tmp/scratch/RtmpjUEKjF’   ‘~/tmp/scratch/RtmpjxG3Gz’ ‘~/tmp/scratch/RtmpjyaL3D’   ‘~/tmp/scratch/Rtmpk1m9kD’ ‘~/tmp/scratch/Rtmpk5K2dx’   ‘~/tmp/scratch/RtmpkGMqZQ’ ‘~/tmp/scratch/Rtmpl8L0RV’   ‘~/tmp/scratch/RtmplbcehW’ ‘~/tmp/scratch/RtmpmUpFhR’   ‘~/tmp/scratch/Rtmpmr2pEa’ ‘~/tmp/scratch/Rtmpn0LexC’   ‘~/tmp/scratch/Rtmpn6a4TK’ ‘~/tmp/scratch/RtmpoNuxoZ’   ‘~/tmp/scratch/RtmpowbUtp’ ‘~/tmp/scratch/RtmpoylcXS’   ‘~/tmp/scratch/Rtmpp6gNYO’ ‘~/tmp/scratch/RtmppWly1b’   ‘~/tmp/scratch/RtmpqHFSg3’ ‘~/tmp/scratch/RtmprKmBAU’   ‘~/tmp/scratch/RtmprkxqDw’ ‘~/tmp/scratch/RtmpsY1BhR’   ‘~/tmp/scratch/RtmpscEoop’ ‘~/tmp/scratch/RtmpsqGE64’   ‘~/tmp/scratch/Rtmpsu329G’ ‘~/tmp/scratch/RtmptW4upT’   ‘~/tmp/scratch/Rtmpu2HoZJ’ ‘~/tmp/scratch/RtmpuAVg4N’   ‘~/tmp/scratch/RtmpuxMgWU’ ‘~/tmp/scratch/RtmpvT3O6Q’   ‘~/tmp/scratch/RtmpwYwpzn’ ‘~/tmp/scratch/RtmpwflnBI’   ‘~/tmp/scratch/RtmpxALsfP’ ‘~/tmp/scratch/RtmpxHoVOb’   ‘~/tmp/scratch/RtmpxM03N1’ ‘~/tmp/scratch/RtmpxZKjqC’   ‘~/tmp/scratch/RtmpxfCNbz’ ‘~/tmp/scratch/Rtmpxt4Dvq’   ‘~/tmp/scratch/Rtmpy1v8tl’ ‘~/tmp/scratch/RtmpybXi65’   ‘~/tmp/scratch/RtmpyvgL9X’ ‘~/tmp/scratch/Rtmpz28dQT’   ‘~/tmp/scratch/RtmpzBqgvw’ ‘~/tmp/scratch/RtmpzcCz0k’   ‘~/tmp/scratch/RtmpzqHBsg’ ‘~/tmp/scratch/Rtmpzt9k9S’   ‘~/tmp/scratch/xvfb-run.0An9ae’ ‘~/tmp/scratch/xvfb-run.1FMEjr’   ‘~/tmp/scratch/xvfb-run.1gZV11’ ‘~/tmp/scratch/xvfb-run.2R0dT4’   ‘~/tmp/scratch/xvfb-run.4Ju7MJ’ ‘~/tmp/scratch/xvfb-run.73EXIj’   ‘~/tmp/scratch/xvfb-run.78ox3s’ ‘~/tmp/scratch/xvfb-run.7dBIM1’   ‘~/tmp/scratch/xvfb-run.7eZFA2’ ‘~/tmp/scratch/xvfb-run.7mcHxf’   ‘~/tmp/scratch/xvfb-run.82Miy5’ ‘~/tmp/scratch/xvfb-run.94rk5U’   ‘~/tmp/scratch/xvfb-run.9Mlm5D’ ‘~/tmp/scratch/xvfb-run.9rDUco’   ‘~/tmp/scratch/xvfb-run.BSIr6A’ ‘~/tmp/scratch/xvfb-run.CVUAYq’   ‘~/tmp/scratch/xvfb-run.EFRF3q’ ‘~/tmp/scratch/xvfb-run.EdfVbV’   ‘~/tmp/scratch/xvfb-run.FhJxwJ’ ‘~/tmp/scratch/xvfb-run.FhdvPZ’   ‘~/tmp/scratch/xvfb-run.HPqHmK’ ‘~/tmp/scratch/xvfb-run.I867d7’   ‘~/tmp/scratch/xvfb-run.IKZQt4’ ‘~/tmp/scratch/xvfb-run.J6uXcW’   ‘~/tmp/scratch/xvfb-run.JRP3fk’ ‘~/tmp/scratch/xvfb-run.JhmozS’   ‘~/tmp/scratch/xvfb-run.L3JeEB’ ‘~/tmp/scratch/xvfb-run.LKittR’   ‘~/tmp/scratch/xvfb-run.Loj5ie’ ‘~/tmp/scratch/xvfb-run.M1xRWX’   ‘~/tmp/scratch/xvfb-run.Mj2oC4’ ‘~/tmp/scratch/xvfb-run.NEG62z’   ‘~/tmp/scratch/xvfb-run.NLecPI’ ‘~/tmp/scratch/xvfb-run.ObQi3i’   ‘~/tmp/scratch/xvfb-run.OfnyVg’ ‘~/tmp/scratch/xvfb-run.PArud3’   ‘~/tmp/scratch/xvfb-run.QKOV5b’ ‘~/tmp/scratch/xvfb-run.Qfyc0o’   ‘~/tmp/scratch/xvfb-run.QgHTq1’ ‘~/tmp/scratch/xvfb-run.QmLIN5’   ‘~/tmp/scratch/xvfb-run.RaiT8Y’ ‘~/tmp/scratch/xvfb-run.RqtbzJ’   ‘~/tmp/scratch/xvfb-run.SDzNZU’ ‘~/tmp/scratch/xvfb-run.SkaOuv’   ‘~/tmp/scratch/xvfb-run.Sze3hE’ ‘~/tmp/scratch/xvfb-run.UIxMFG’   ‘~/tmp/scratch/xvfb-run.VNp00U’ ‘~/tmp/scratch/xvfb-run.XAtp5h’   ‘~/tmp/scratch/xvfb-run.YJLiim’ ‘~/tmp/scratch/xvfb-run.YWhxaF’   ‘~/tmp/scratch/xvfb-run.Ygo60k’ ‘~/tmp/scratch/xvfb-run.ZtUuTY’   ‘~/tmp/scratch/xvfb-run.aTTt3x’ ‘~/tmp/scratch/xvfb-run.bd556s’   ‘~/tmp/scratch/xvfb-run.bidYnY’ ‘~/tmp/scratch/xvfb-run.d3znUF’   ‘~/tmp/scratch/xvfb-run.dghvqa’ ‘~/tmp/scratch/xvfb-run.eh3UhT’   ‘~/tmp/scratch/xvfb-run.faMNP0’ ‘~/tmp/scratch/xvfb-run.hAbrHO’   ‘~/tmp/scratch/xvfb-run.iVnuId’ ‘~/tmp/scratch/xvfb-run.ipKJfm’   ‘~/tmp/scratch/xvfb-run.jQBpX1’ ‘~/tmp/scratch/xvfb-run.mVGThh’   ‘~/tmp/scratch/xvfb-run.ndsZZq’ ‘~/tmp/scratch/xvfb-run.nzHZXN’   ‘~/tmp/scratch/xvfb-run.o6I13v’ ‘~/tmp/scratch/xvfb-run.qapmJX’   ‘~/tmp/scratch/xvfb-run.rQpfdm’ ‘~/tmp/scratch/xvfb-run.s2gjPw’   ‘~/tmp/scratch/xvfb-run.uqiGLh’ ‘~/tmp/scratch/xvfb-run.vdN3RH’   ‘~/tmp/scratch/xvfb-run.w9D4BQ’ ‘~/tmp/scratch/xvfb-run.wzhlBI’   ‘~/tmp/scratch/xvfb-run.xkwNrH’ ‘~/tmp/scratch/xvfb-run.yyLo6f’
• DONE

Status: 2 NOTEs