• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 16:57:29 UTC
• checking for file ‘polypharmacy/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘polypharmacy’ version ‘1.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘polypharmacy’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/9s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) stat_quantile_prob.Rd:14: Lost braces; missing escapes or markup?     14 | Number {25, 50, 75}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/6s] OK   Running ‘testthat.R’ [4s/6s]
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0FzL6V’ ‘~/tmp/scratch/Rtmp0s0mJp’   ‘~/tmp/scratch/Rtmp0zssuu’ ‘~/tmp/scratch/Rtmp10KSH9’   ‘~/tmp/scratch/Rtmp1rGCsL’ ‘~/tmp/scratch/Rtmp2sKOsJ’   ‘~/tmp/scratch/Rtmp52AdIZ’ ‘~/tmp/scratch/Rtmp5zrByh’   ‘~/tmp/scratch/Rtmp6ISGBH’ ‘~/tmp/scratch/Rtmp7Oz0wm’   ‘~/tmp/scratch/Rtmp8LPJ3d’ ‘~/tmp/scratch/Rtmp8dx2FO’   ‘~/tmp/scratch/Rtmp902hUo’ ‘~/tmp/scratch/Rtmp9gnDgD’   ‘~/tmp/scratch/RtmpAEYTXN’ ‘~/tmp/scratch/RtmpAHtzRd’   ‘~/tmp/scratch/RtmpAUZXk4’ ‘~/tmp/scratch/RtmpAUi1Dl’   ‘~/tmp/scratch/RtmpAW1Z30’ ‘~/tmp/scratch/RtmpB65plO’   ‘~/tmp/scratch/RtmpBGi3Aj’ ‘~/tmp/scratch/RtmpCQtskW’   ‘~/tmp/scratch/RtmpCeIIu0’ ‘~/tmp/scratch/RtmpClA3vR’   ‘~/tmp/scratch/RtmpDTjAIm’ ‘~/tmp/scratch/RtmpEAvSSu’   ‘~/tmp/scratch/RtmpEKjITx’ ‘~/tmp/scratch/RtmpEgt15l’   ‘~/tmp/scratch/RtmpF3HhoZ’ ‘~/tmp/scratch/RtmpFiBu7G’   ‘~/tmp/scratch/RtmpFoshM3’ ‘~/tmp/scratch/RtmpFr8v5h’   ‘~/tmp/scratch/RtmpG6yX2D’ ‘~/tmp/scratch/RtmpGGWNyL’   ‘~/tmp/scratch/RtmpHPlOfE’ ‘~/tmp/scratch/RtmpIMO8Bq’   ‘~/tmp/scratch/RtmpIPmjTr’ ‘~/tmp/scratch/RtmpIR4cMF’   ‘~/tmp/scratch/RtmpJG3ihb’ ‘~/tmp/scratch/RtmpJxb0rN’   ‘~/tmp/scratch/RtmpL3qOqK’ ‘~/tmp/scratch/RtmpLzcG9a’   ‘~/tmp/scratch/RtmpNx82PN’ ‘~/tmp/scratch/RtmpOEQwkZ’   ‘~/tmp/scratch/RtmpOy7Ta4’ ‘~/tmp/scratch/RtmpPdrgd8’   ‘~/tmp/scratch/RtmpPkToXw’ ‘~/tmp/scratch/RtmpQL506H’   ‘~/tmp/scratch/RtmpQxSB22’ ‘~/tmp/scratch/RtmpSU0G6d’   ‘~/tmp/scratch/RtmpSh8XrK’ ‘~/tmp/scratch/RtmpTCWgDl’   ‘~/tmp/scratch/RtmpThOHfI’ ‘~/tmp/scratch/RtmpU9mqO7’   ‘~/tmp/scratch/RtmpUHAxzg’ ‘~/tmp/scratch/RtmpUMOw31’   ‘~/tmp/scratch/RtmpUXKWA9’ ‘~/tmp/scratch/RtmpXL1dLe’   ‘~/tmp/scratch/RtmpXmvj6q’ ‘~/tmp/scratch/RtmpYeQmZy’   ‘~/tmp/scratch/RtmpYn8sgC’ ‘~/tmp/scratch/RtmpZQ2Opu’   ‘~/tmp/scratch/RtmpaNzjHX’ ‘~/tmp/scratch/RtmpaT4WnZ’   ‘~/tmp/scratch/Rtmpab7eI2’ ‘~/tmp/scratch/Rtmpalb2aI’   ‘~/tmp/scratch/RtmpbJhQFk’ ‘~/tmp/scratch/RtmpcamLyu’   ‘~/tmp/scratch/RtmpcpcjXr’ ‘~/tmp/scratch/RtmpcvbaES’   ‘~/tmp/scratch/Rtmpd00P5o’ ‘~/tmp/scratch/RtmpdcqpUc’   ‘~/tmp/scratch/RtmpddqtDG’ ‘~/tmp/scratch/Rtmpe62KGj’   ‘~/tmp/scratch/RtmpeIW7y2’ ‘~/tmp/scratch/RtmpeUhXbT’   ‘~/tmp/scratch/RtmpfFlKXS’ ‘~/tmp/scratch/RtmpfR83po’   ‘~/tmp/scratch/RtmpgHYZd4’ ‘~/tmp/scratch/RtmpgNjuZe’   ‘~/tmp/scratch/Rtmph6P8yI’ ‘~/tmp/scratch/RtmphaE79o’   ‘~/tmp/scratch/RtmpiBvxdj’ ‘~/tmp/scratch/RtmpiwyvIK’   ‘~/tmp/scratch/RtmpjGIZJ0’ ‘~/tmp/scratch/Rtmpk8BFiB’   ‘~/tmp/scratch/RtmpkRSZij’ ‘~/tmp/scratch/Rtmpl4xrgB’   ‘~/tmp/scratch/RtmplBQ731’ ‘~/tmp/scratch/RtmplFAqj5’   ‘~/tmp/scratch/RtmpmQTopU’ ‘~/tmp/scratch/Rtmpn0w7x9’   ‘~/tmp/scratch/Rtmpnni6Kx’ ‘~/tmp/scratch/Rtmpo8O6lO’   ‘~/tmp/scratch/RtmpoPp52N’ ‘~/tmp/scratch/RtmporU03o’   ‘~/tmp/scratch/Rtmpotdy8M’ ‘~/tmp/scratch/Rtmpoz6nAp’   ‘~/tmp/scratch/RtmppBiWTi’ ‘~/tmp/scratch/RtmppKZlcp’   ‘~/tmp/scratch/RtmpqOuVb9’ ‘~/tmp/scratch/Rtmpr4zq6F’   ‘~/tmp/scratch/Rtmprv7f7N’ ‘~/tmp/scratch/Rtmps8Vazc’   ‘~/tmp/scratch/RtmpszkrA2’ ‘~/tmp/scratch/RtmptDuA6W’   ‘~/tmp/scratch/RtmpuFQXX4’ ‘~/tmp/scratch/RtmpuL3KEz’   ‘~/tmp/scratch/RtmpvcBr9R’ ‘~/tmp/scratch/RtmpwJhMF2’   ‘~/tmp/scratch/RtmpwjRjpP’ ‘~/tmp/scratch/RtmpxgAj7o’   ‘~/tmp/scratch/RtmpxmmdLu’ ‘~/tmp/scratch/RtmpxwjpBo’   ‘~/tmp/scratch/RtmpyP1d60’ ‘~/tmp/scratch/RtmpyfV0rZ’   ‘~/tmp/scratch/RtmpyixcBE’   ‘~/tmp/scratch/quarto-session4b237fd73f67f360’   ‘~/tmp/scratch/xvfb-run.0JqoFe’ ‘~/tmp/scratch/xvfb-run.0M6NTt’   ‘~/tmp/scratch/xvfb-run.3IRlmB’ ‘~/tmp/scratch/xvfb-run.5MxMan’   ‘~/tmp/scratch/xvfb-run.61cT44’ ‘~/tmp/scratch/xvfb-run.8RINNq’   ‘~/tmp/scratch/xvfb-run.8o8jjj’ ‘~/tmp/scratch/xvfb-run.ASgupG’   ‘~/tmp/scratch/xvfb-run.AoHbKT’ ‘~/tmp/scratch/xvfb-run.D7ZSVG’   ‘~/tmp/scratch/xvfb-run.HkElE5’ ‘~/tmp/scratch/xvfb-run.Ic8nq3’   ‘~/tmp/scratch/xvfb-run.JOyN1o’ ‘~/tmp/scratch/xvfb-run.JeqHez’   ‘~/tmp/scratch/xvfb-run.Lyfj04’ ‘~/tmp/scratch/xvfb-run.MaeXyA’   ‘~/tmp/scratch/xvfb-run.MhSYla’ ‘~/tmp/scratch/xvfb-run.OTSewJ’   ‘~/tmp/scratch/xvfb-run.RTUWZn’ ‘~/tmp/scratch/xvfb-run.RlzDbC’   ‘~/tmp/scratch/xvfb-run.SKtyMQ’ ‘~/tmp/scratch/xvfb-run.TVMByE’   ‘~/tmp/scratch/xvfb-run.VvMBW5’ ‘~/tmp/scratch/xvfb-run.VzBATW’   ‘~/tmp/scratch/xvfb-run.aDWBB3’ ‘~/tmp/scratch/xvfb-run.bPSgIM’   ‘~/tmp/scratch/xvfb-run.cbPFek’ ‘~/tmp/scratch/xvfb-run.cwGs6c’   ‘~/tmp/scratch/xvfb-run.fQyqil’ ‘~/tmp/scratch/xvfb-run.iqH2yF’   ‘~/tmp/scratch/xvfb-run.irePlq’ ‘~/tmp/scratch/xvfb-run.pocPNb’   ‘~/tmp/scratch/xvfb-run.qtSNYj’ ‘~/tmp/scratch/xvfb-run.rE9YWo’   ‘~/tmp/scratch/xvfb-run.t1UIRo’ ‘~/tmp/scratch/xvfb-run.tCMZ4o’   ‘~/tmp/scratch/xvfb-run.tek5QB’ ‘~/tmp/scratch/xvfb-run.uj0b3P’   ‘~/tmp/scratch/xvfb-run.urlEvB’ ‘~/tmp/scratch/xvfb-run.vI2PJy’   ‘~/tmp/scratch/xvfb-run.xpaXFn’ ‘~/tmp/scratch/xvfb-run.zHlZ0q’
• DONE

Status: 2 NOTEs