• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 16:57:25 UTC
• checking for file ‘polymapR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘polymapR’ version ‘1.1.7’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘polymapR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [439s/577s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... NOTE Rd files without \usage:   ‘p4_functions.Rd’ ‘r4_functions.Rd’ ‘r6_functions.Rd’ \arguments should not be documented without \usage.
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/11s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [16s/18s] OK
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1OHFgm’ ‘~/tmp/scratch/Rtmp1mltBr’   ‘~/tmp/scratch/Rtmp1peCZK’ ‘~/tmp/scratch/Rtmp2g6Tr1’   ‘~/tmp/scratch/Rtmp2tfv2y’ ‘~/tmp/scratch/Rtmp2z3VFQ’   ‘~/tmp/scratch/Rtmp3EB1p0’ ‘~/tmp/scratch/Rtmp3oIH15’   ‘~/tmp/scratch/Rtmp3smbix’ ‘~/tmp/scratch/Rtmp3ylvxq’   ‘~/tmp/scratch/Rtmp4rsCQQ’ ‘~/tmp/scratch/Rtmp5BGkRy’   ‘~/tmp/scratch/Rtmp5FXPyR’ ‘~/tmp/scratch/Rtmp5Sghra’   ‘~/tmp/scratch/Rtmp5b7n48’ ‘~/tmp/scratch/Rtmp60vTeW’   ‘~/tmp/scratch/Rtmp6BGOzy’ ‘~/tmp/scratch/Rtmp6Kvkyz’   ‘~/tmp/scratch/Rtmp6WJvOt’ ‘~/tmp/scratch/Rtmp6y7Tpx’   ‘~/tmp/scratch/Rtmp797zce’ ‘~/tmp/scratch/Rtmp7Kmvf7’   ‘~/tmp/scratch/Rtmp8Hxtsc’ ‘~/tmp/scratch/Rtmp8Jj4dQ’   ‘~/tmp/scratch/Rtmp8R1UK5’ ‘~/tmp/scratch/Rtmp8T4jnA’   ‘~/tmp/scratch/Rtmp8breBZ’ ‘~/tmp/scratch/Rtmp8hfLG3’   ‘~/tmp/scratch/Rtmp9CylYZ’ ‘~/tmp/scratch/Rtmp9QcJ0D’   ‘~/tmp/scratch/Rtmp9WPeNI’ ‘~/tmp/scratch/RtmpA3P1WG’   ‘~/tmp/scratch/RtmpAEX0kZ’ ‘~/tmp/scratch/RtmpAdkMcb’   ‘~/tmp/scratch/RtmpBAstaN’ ‘~/tmp/scratch/RtmpBb6YeE’   ‘~/tmp/scratch/RtmpC8ggoC’ ‘~/tmp/scratch/RtmpCFsM9k’   ‘~/tmp/scratch/RtmpClG87l’ ‘~/tmp/scratch/RtmpClGDuF’   ‘~/tmp/scratch/RtmpClyylX’ ‘~/tmp/scratch/RtmpCxjx1j’   ‘~/tmp/scratch/RtmpD59i6v’ ‘~/tmp/scratch/RtmpDQI9Yu’   ‘~/tmp/scratch/RtmpEBLMCz’ ‘~/tmp/scratch/RtmpEG2UaQ’   ‘~/tmp/scratch/RtmpEHD51a’ ‘~/tmp/scratch/RtmpF7xhDr’   ‘~/tmp/scratch/RtmpFVQvks’ ‘~/tmp/scratch/RtmpFVaP9S’   ‘~/tmp/scratch/RtmpFxaOpF’ ‘~/tmp/scratch/RtmpG42Qtx’   ‘~/tmp/scratch/RtmpGCgIaa’ ‘~/tmp/scratch/RtmpGYeALc’   ‘~/tmp/scratch/RtmpHC2wk3’ ‘~/tmp/scratch/RtmpI1Oal5’   ‘~/tmp/scratch/RtmpIcNL9B’ ‘~/tmp/scratch/RtmpIjpizN’   ‘~/tmp/scratch/RtmpInFRDK’ ‘~/tmp/scratch/RtmpJ1k1lU’   ‘~/tmp/scratch/RtmpJRUWJM’ ‘~/tmp/scratch/RtmpJYiWYw’   ‘~/tmp/scratch/RtmpJiZDjF’ ‘~/tmp/scratch/RtmpKhQ7VN’   ‘~/tmp/scratch/RtmpKoQ9f8’ ‘~/tmp/scratch/RtmpLenQzt’   ‘~/tmp/scratch/RtmpLsR6Pw’ ‘~/tmp/scratch/RtmpMjx2bS’   ‘~/tmp/scratch/RtmpMrWCfh’ ‘~/tmp/scratch/RtmpMxXeVb’   ‘~/tmp/scratch/RtmpNTkwLC’ ‘~/tmp/scratch/RtmpO5hvt0’   ‘~/tmp/scratch/RtmpOFjgfD’ ‘~/tmp/scratch/RtmpOu52LZ’   ‘~/tmp/scratch/RtmpPQp5DM’ ‘~/tmp/scratch/RtmpPb295v’   ‘~/tmp/scratch/RtmpPgaJqu’ ‘~/tmp/scratch/RtmpPht7EJ’   ‘~/tmp/scratch/RtmpQVmBhG’ ‘~/tmp/scratch/RtmpQnKN1Z’   ‘~/tmp/scratch/RtmpROwVO1’ ‘~/tmp/scratch/RtmpRjNeqk’   ‘~/tmp/scratch/RtmpS7AOjA’ ‘~/tmp/scratch/RtmpSIJlhd’   ‘~/tmp/scratch/RtmpSUtfzX’ ‘~/tmp/scratch/RtmpSedjoc’   ‘~/tmp/scratch/RtmpSm83ZR’ ‘~/tmp/scratch/RtmpT95Kkj’   ‘~/tmp/scratch/RtmpTOBxCT’ ‘~/tmp/scratch/RtmpTwlP5l’   ‘~/tmp/scratch/RtmpUvOKlY’ ‘~/tmp/scratch/RtmpVOVf2b’   ‘~/tmp/scratch/RtmpVwuBwe’ ‘~/tmp/scratch/RtmpVyKyvB’   ‘~/tmp/scratch/RtmpWILbMk’ ‘~/tmp/scratch/RtmpWijQ7I’   ‘~/tmp/scratch/RtmpWlrTml’ ‘~/tmp/scratch/RtmpXCy3Hb’   ‘~/tmp/scratch/RtmpXJi8tF’ ‘~/tmp/scratch/RtmpXXTKuV’   ‘~/tmp/scratch/RtmpXg2At1’ ‘~/tmp/scratch/RtmpXoXoGl’   ‘~/tmp/scratch/RtmpYnJuHG’ ‘~/tmp/scratch/RtmpZ17zfb’   ‘~/tmp/scratch/RtmpZZlh2l’ ‘~/tmp/scratch/RtmpaM9EFe’   ‘~/tmp/scratch/RtmpaMr1LH’ ‘~/tmp/scratch/Rtmpc54llf’   ‘~/tmp/scratch/RtmpdI2cXX’ ‘~/tmp/scratch/RtmpdJRREy’   ‘~/tmp/scratch/RtmpdUo9Wd’ ‘~/tmp/scratch/RtmpdlIaWp’   ‘~/tmp/scratch/RtmpdrGywe’ ‘~/tmp/scratch/RtmpdrTerS’   ‘~/tmp/scratch/RtmpeMuANf’ ‘~/tmp/scratch/RtmpecYdnz’   ‘~/tmp/scratch/RtmpfGozTG’ ‘~/tmp/scratch/RtmpfRaq9R’   ‘~/tmp/scratch/RtmpfaKJxE’ ‘~/tmp/scratch/Rtmpg3IvWH’   ‘~/tmp/scratch/Rtmpg44vrM’ ‘~/tmp/scratch/RtmpgLxoaP’   ‘~/tmp/scratch/RtmpgSLchV’ ‘~/tmp/scratch/RtmpgSUOxR’   ‘~/tmp/scratch/Rtmpgr9UTJ’ ‘~/tmp/scratch/Rtmpgrd7B3’   ‘~/tmp/scratch/RtmphJlZpH’ ‘~/tmp/scratch/RtmphSN0kp’   ‘~/tmp/scratch/Rtmphtk2rk’ ‘~/tmp/scratch/RtmpizZRfi’   ‘~/tmp/scratch/RtmpkCfsKC’ ‘~/tmp/scratch/RtmpkDLXey’   ‘~/tmp/scratch/RtmpkbFV6N’ ‘~/tmp/scratch/Rtmpl3RzRS’   ‘~/tmp/scratch/Rtmpl5m8AV’ ‘~/tmp/scratch/RtmpmOkQlM’   ‘~/tmp/scratch/RtmpmWzNP9’ ‘~/tmp/scratch/RtmpmeBpDS’   ‘~/tmp/scratch/RtmpmvVfvS’ ‘~/tmp/scratch/Rtmpmw9qIc’   ‘~/tmp/scratch/RtmpnB2za6’ ‘~/tmp/scratch/Rtmpnm1X9V’   ‘~/tmp/scratch/Rtmpnrppfu’ ‘~/tmp/scratch/RtmpoHuMte’   ‘~/tmp/scratch/RtmpofLSil’ ‘~/tmp/scratch/RtmpoqyUPO’   ‘~/tmp/scratch/RtmpoyFGeP’ ‘~/tmp/scratch/RtmpoybbBD’   ‘~/tmp/scratch/Rtmpp5rXeu’ ‘~/tmp/scratch/RtmppFMIPE’   ‘~/tmp/scratch/RtmppHRNqy’ ‘~/tmp/scratch/RtmppOVu6r’   ‘~/tmp/scratch/RtmppyWmz9’ ‘~/tmp/scratch/Rtmpq4q5tR’   ‘~/tmp/scratch/Rtmpq7KCwn’ ‘~/tmp/scratch/Rtmpqh4Yfo’   ‘~/tmp/scratch/RtmpqshEf5’ ‘~/tmp/scratch/RtmprEuDTc’   ‘~/tmp/scratch/RtmprKjzcg’ ‘~/tmp/scratch/RtmprpaeCY’   ‘~/tmp/scratch/RtmprpzhLG’ ‘~/tmp/scratch/Rtmps0CZTh’   ‘~/tmp/scratch/RtmptfF0cu’ ‘~/tmp/scratch/RtmptyEpfW’   ‘~/tmp/scratch/Rtmpudyn37’ ‘~/tmp/scratch/RtmpvAIACU’   ‘~/tmp/scratch/RtmpvD4Iwj’ ‘~/tmp/scratch/RtmpvSMrBm’   ‘~/tmp/scratch/Rtmpw1cl2W’ ‘~/tmp/scratch/Rtmpw5M7Tv’   ‘~/tmp/scratch/RtmpxId6fI’ ‘~/tmp/scratch/RtmpxLCoCZ’   ‘~/tmp/scratch/RtmpxMRlsC’ ‘~/tmp/scratch/RtmpxZgAZ4’   ‘~/tmp/scratch/RtmpxcaODU’ ‘~/tmp/scratch/Rtmpy6yHZ6’   ‘~/tmp/scratch/RtmpyMWMs4’ ‘~/tmp/scratch/RtmpyZgfmB’   ‘~/tmp/scratch/RtmpycNwom’ ‘~/tmp/scratch/RtmpyePOxs’   ‘~/tmp/scratch/Rtmpyh4wrS’ ‘~/tmp/scratch/cc6Vln72.s’   ‘~/tmp/scratch/cchCbC4l.s’ ‘~/tmp/scratch/xvfb-run.0A20Ph’   ‘~/tmp/scratch/xvfb-run.0ZZjby’ ‘~/tmp/scratch/xvfb-run.0k5mGq’   ‘~/tmp/scratch/xvfb-run.19Gh4J’ ‘~/tmp/scratch/xvfb-run.1DcH9Z’   ‘~/tmp/scratch/xvfb-run.1tlFIu’ ‘~/tmp/scratch/xvfb-run.2gyItS’   ‘~/tmp/scratch/xvfb-run.30Xdda’ ‘~/tmp/scratch/xvfb-run.38fanM’   ‘~/tmp/scratch/xvfb-run.5ipOFq’ ‘~/tmp/scratch/xvfb-run.6MGbbz’   ‘~/tmp/scratch/xvfb-run.76YxxF’ ‘~/tmp/scratch/xvfb-run.7BCf22’   ‘~/tmp/scratch/xvfb-run.7zyK1D’ ‘~/tmp/scratch/xvfb-run.9oVc8w’   ‘~/tmp/scratch/xvfb-run.BW4rKU’ ‘~/tmp/scratch/xvfb-run.C6XOEq’   ‘~/tmp/scratch/xvfb-run.CK4XAf’ ‘~/tmp/scratch/xvfb-run.CVnzXD’   ‘~/tmp/scratch/xvfb-run.CfZLx8’ ‘~/tmp/scratch/xvfb-run.ClpCTI’   ‘~/tmp/scratch/xvfb-run.CzNmDw’ ‘~/tmp/scratch/xvfb-run.DPVjUs’   ‘~/tmp/scratch/xvfb-run.DySv1q’ ‘~/tmp/scratch/xvfb-run.ELEEpi’   ‘~/tmp/scratch/xvfb-run.FYUPQT’ ‘~/tmp/scratch/xvfb-run.GIheSG’   ‘~/tmp/scratch/xvfb-run.I4dYd7’ ‘~/tmp/scratch/xvfb-run.IDTri6’   ‘~/tmp/scratch/xvfb-run.IvBMNU’ ‘~/tmp/scratch/xvfb-run.JB3j18’   ‘~/tmp/scratch/xvfb-run.JrbW9K’ ‘~/tmp/scratch/xvfb-run.LIuPVE’   ‘~/tmp/scratch/xvfb-run.LfqMtu’ ‘~/tmp/scratch/xvfb-run.OHFdVk’   ‘~/tmp/scratch/xvfb-run.Ol8WTo’ ‘~/tmp/scratch/xvfb-run.Ooytdr’   ‘~/tmp/scratch/xvfb-run.QDHh7a’ ‘~/tmp/scratch/xvfb-run.R7PZOB’   ‘~/tmp/scratch/xvfb-run.SSU3lr’ ‘~/tmp/scratch/xvfb-run.U0zQnX’   ‘~/tmp/scratch/xvfb-run.UezOd2’ ‘~/tmp/scratch/xvfb-run.UvtYq9’   ‘~/tmp/scratch/xvfb-run.WxgwcV’ ‘~/tmp/scratch/xvfb-run.Wz8LhJ’   ‘~/tmp/scratch/xvfb-run.XycxRr’ ‘~/tmp/scratch/xvfb-run.YAZE8T’   ‘~/tmp/scratch/xvfb-run.YjpBfG’ ‘~/tmp/scratch/xvfb-run.Zg7UDo’   ‘~/tmp/scratch/xvfb-run.aQNiyu’ ‘~/tmp/scratch/xvfb-run.amuPjL’   ‘~/tmp/scratch/xvfb-run.arseXI’ ‘~/tmp/scratch/xvfb-run.bCNTcj’   ‘~/tmp/scratch/xvfb-run.chOKxT’ ‘~/tmp/scratch/xvfb-run.dHRVxo’   ‘~/tmp/scratch/xvfb-run.g20xph’ ‘~/tmp/scratch/xvfb-run.gVHkiE’   ‘~/tmp/scratch/xvfb-run.grfZas’ ‘~/tmp/scratch/xvfb-run.gvVXGf’   ‘~/tmp/scratch/xvfb-run.hW5fnc’ ‘~/tmp/scratch/xvfb-run.hzfbip’   ‘~/tmp/scratch/xvfb-run.iiLhcM’ ‘~/tmp/scratch/xvfb-run.j23Ahk’   ‘~/tmp/scratch/xvfb-run.jTx1oT’ ‘~/tmp/scratch/xvfb-run.lL8YXX’   ‘~/tmp/scratch/xvfb-run.mGNDja’ ‘~/tmp/scratch/xvfb-run.mwbGIu’   ‘~/tmp/scratch/xvfb-run.nfeGd0’ ‘~/tmp/scratch/xvfb-run.p3LPML’   ‘~/tmp/scratch/xvfb-run.qHdzRo’ ‘~/tmp/scratch/xvfb-run.rVrCYn’   ‘~/tmp/scratch/xvfb-run.sV4GOX’ ‘~/tmp/scratch/xvfb-run.tTb6f5’   ‘~/tmp/scratch/xvfb-run.uCEVXC’ ‘~/tmp/scratch/xvfb-run.uGtFrs’   ‘~/tmp/scratch/xvfb-run.uTNInk’ ‘~/tmp/scratch/xvfb-run.umL7ZH’   ‘~/tmp/scratch/xvfb-run.veiTnp’ ‘~/tmp/scratch/xvfb-run.wNERLL’   ‘~/tmp/scratch/xvfb-run.wrUkkN’ ‘~/tmp/scratch/xvfb-run.yMfWUb’   ‘~/tmp/scratch/xvfb-run.yTzP6O’ ‘~/tmp/scratch/xvfb-run.zi3nAA’
• DONE

Status: 2 NOTEs