• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 16:53:44 UTC
• checking for file ‘plotprotein/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘plotprotein’ version ‘1.0’
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Yao Geng <gengyao0103521@qq.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = "Xiaoyu",                       family = "Zhang",                       role = "aut"),                person(given = "Yao",                       family = "Geng",                       role = "cre",                       email = "gengyao0103521@qq.com")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘plotprotein’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/7s] OK
• checking Rd files ... [0s/0s] NOTE checkRd: (-1) domain_data.Rd:29: Lost braces     29 | code{\link{help}}        | ^ checkRd: (-1) length_data.Rd:32: Lost braces     32 | code{\link{help}}        | ^ checkRd: (-1) plotdomain.Rd:30: Lost braces     30 | code{\link{help}}        | ^ checkRd: (-1) plotmutagensis.Rd:30: Lost braces     30 | code{\link{help}}        | ^ checkRd: (-1) plotprotein-package.Rd:20: Lost braces     20 | code{\link{help}}        | ^ checkRd: (-1) plotprotein.Rd:30: Lost braces     30 | code{\link{help}}        | ^ checkRd: (-1) plotsite.Rd:30: Lost braces     30 | code{\link{help}}        | ^ checkRd: (-1) site_data.Rd:30: Lost braces     30 | code{\link{help}}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [1s/1s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp089iVC’ ‘~/tmp/scratch/Rtmp0pTyv1’   ‘~/tmp/scratch/Rtmp2EGtOR’ ‘~/tmp/scratch/Rtmp4Q7xXa’   ‘~/tmp/scratch/Rtmp4igMdv’ ‘~/tmp/scratch/Rtmp57bvq7’   ‘~/tmp/scratch/Rtmp6Shd42’ ‘~/tmp/scratch/Rtmp79N37h’   ‘~/tmp/scratch/Rtmp7LsWVB’ ‘~/tmp/scratch/Rtmp90qOdu’   ‘~/tmp/scratch/Rtmp9VSCo8’ ‘~/tmp/scratch/Rtmp9aerU4’   ‘~/tmp/scratch/Rtmp9o2agT’ ‘~/tmp/scratch/RtmpB1MQkw’   ‘~/tmp/scratch/RtmpBHRLr0’ ‘~/tmp/scratch/RtmpBdaVSV’   ‘~/tmp/scratch/RtmpCBb9GH’ ‘~/tmp/scratch/RtmpDKLwxk’   ‘~/tmp/scratch/RtmpDPuvqY’ ‘~/tmp/scratch/RtmpE9E0aW’   ‘~/tmp/scratch/RtmpEHtEA2’ ‘~/tmp/scratch/RtmpEmfUJx’   ‘~/tmp/scratch/RtmpEoqTGw’ ‘~/tmp/scratch/RtmpFUlVQx’   ‘~/tmp/scratch/RtmpFgb1P7’ ‘~/tmp/scratch/RtmpGUvtjV’   ‘~/tmp/scratch/RtmpGZTlLz’ ‘~/tmp/scratch/RtmpGdO1S2’   ‘~/tmp/scratch/RtmpHVx939’ ‘~/tmp/scratch/RtmpIGXNsE’   ‘~/tmp/scratch/RtmpIYOEYr’ ‘~/tmp/scratch/RtmpK2a8vD’   ‘~/tmp/scratch/RtmpK4UwcG’ ‘~/tmp/scratch/RtmpLT3DCy’   ‘~/tmp/scratch/RtmpLqOEyg’ ‘~/tmp/scratch/RtmpNE9U1Q’   ‘~/tmp/scratch/RtmpNaZeRw’ ‘~/tmp/scratch/RtmpNilLLb’   ‘~/tmp/scratch/RtmpNs7NEO’ ‘~/tmp/scratch/RtmpNzyl7n’   ‘~/tmp/scratch/RtmpON15iB’ ‘~/tmp/scratch/RtmpOV4Cr1’   ‘~/tmp/scratch/RtmpOsqh8C’ ‘~/tmp/scratch/RtmpQcxssM’   ‘~/tmp/scratch/RtmpQyXw7w’ ‘~/tmp/scratch/RtmpR2YpN2’   ‘~/tmp/scratch/RtmpS72Az7’ ‘~/tmp/scratch/RtmpT0B8vN’   ‘~/tmp/scratch/RtmpTOs4uW’ ‘~/tmp/scratch/RtmpTk1ee3’   ‘~/tmp/scratch/RtmpV0CuQW’ ‘~/tmp/scratch/RtmpWHbFFN’   ‘~/tmp/scratch/RtmpXD54B6’ ‘~/tmp/scratch/RtmpXPDNy6’   ‘~/tmp/scratch/RtmpXwLHND’ ‘~/tmp/scratch/RtmpYQVi1F’   ‘~/tmp/scratch/RtmpYXETPA’ ‘~/tmp/scratch/RtmpYXlT0U’   ‘~/tmp/scratch/RtmpYmp9Sg’ ‘~/tmp/scratch/RtmpZ4jqy5’   ‘~/tmp/scratch/RtmpZ934U7’ ‘~/tmp/scratch/RtmpZlgYsj’   ‘~/tmp/scratch/RtmpaH3C8Y’ ‘~/tmp/scratch/RtmpavJm4G’   ‘~/tmp/scratch/RtmpbxHXB8’ ‘~/tmp/scratch/RtmpbxjUmr’   ‘~/tmp/scratch/RtmpcLufxP’ ‘~/tmp/scratch/RtmpcQJphH’   ‘~/tmp/scratch/RtmpcowZZH’ ‘~/tmp/scratch/Rtmpe00GVN’   ‘~/tmp/scratch/RtmpeiZVld’ ‘~/tmp/scratch/RtmpelnIDK’   ‘~/tmp/scratch/Rtmpf1ttr2’ ‘~/tmp/scratch/Rtmpfm1Xq1’   ‘~/tmp/scratch/RtmpggHVDF’ ‘~/tmp/scratch/Rtmphcd5F9’   ‘~/tmp/scratch/Rtmphlng56’ ‘~/tmp/scratch/Rtmphn1LD7’   ‘~/tmp/scratch/RtmpiTRodP’ ‘~/tmp/scratch/Rtmpj8fHbq’   ‘~/tmp/scratch/RtmpkAACwH’ ‘~/tmp/scratch/RtmplSIOrD’   ‘~/tmp/scratch/RtmpnIgu2T’ ‘~/tmp/scratch/Rtmpo7Gh9r’   ‘~/tmp/scratch/RtmppvaLo8’ ‘~/tmp/scratch/Rtmpq4mZZq’   ‘~/tmp/scratch/RtmpqMyx9D’ ‘~/tmp/scratch/RtmpqVdRQj’   ‘~/tmp/scratch/RtmpqgFeNZ’ ‘~/tmp/scratch/Rtmpr9tn7z’   ‘~/tmp/scratch/RtmpsFEfUI’ ‘~/tmp/scratch/RtmpsIcU0w’   ‘~/tmp/scratch/RtmpsbsgON’ ‘~/tmp/scratch/RtmptjVebs’   ‘~/tmp/scratch/RtmpttRk3L’ ‘~/tmp/scratch/RtmpuJkeIx’   ‘~/tmp/scratch/RtmpuPKzKS’ ‘~/tmp/scratch/RtmpuQWDAt’   ‘~/tmp/scratch/RtmpuZyFtz’ ‘~/tmp/scratch/RtmpucTepv’   ‘~/tmp/scratch/RtmpuxbSnc’ ‘~/tmp/scratch/RtmpxDh0RU’   ‘~/tmp/scratch/RtmpxsF2vm’ ‘~/tmp/scratch/RtmpzEEHyd’   ‘~/tmp/scratch/xvfb-run.0KcRrz’ ‘~/tmp/scratch/xvfb-run.1lM0dT’   ‘~/tmp/scratch/xvfb-run.1ocL5f’ ‘~/tmp/scratch/xvfb-run.1op7oZ’   ‘~/tmp/scratch/xvfb-run.43uDKi’ ‘~/tmp/scratch/xvfb-run.8LTwhx’   ‘~/tmp/scratch/xvfb-run.8Z625U’ ‘~/tmp/scratch/xvfb-run.8fFjWP’   ‘~/tmp/scratch/xvfb-run.B0Tci5’ ‘~/tmp/scratch/xvfb-run.DSBH66’   ‘~/tmp/scratch/xvfb-run.EkDvwn’ ‘~/tmp/scratch/xvfb-run.G9My1O’   ‘~/tmp/scratch/xvfb-run.KHOMur’ ‘~/tmp/scratch/xvfb-run.TwNXw5’   ‘~/tmp/scratch/xvfb-run.UowUjH’ ‘~/tmp/scratch/xvfb-run.WfxWPe’   ‘~/tmp/scratch/xvfb-run.X3Rxxa’ ‘~/tmp/scratch/xvfb-run.XTMN9R’   ‘~/tmp/scratch/xvfb-run.Zn13MA’ ‘~/tmp/scratch/xvfb-run.ZsaiPA’   ‘~/tmp/scratch/xvfb-run.arZwoc’ ‘~/tmp/scratch/xvfb-run.ciDuzY’   ‘~/tmp/scratch/xvfb-run.f4WtZy’ ‘~/tmp/scratch/xvfb-run.hfEjRS’   ‘~/tmp/scratch/xvfb-run.hn6i1o’ ‘~/tmp/scratch/xvfb-run.lNoaDY’   ‘~/tmp/scratch/xvfb-run.rAgb9V’ ‘~/tmp/scratch/xvfb-run.rWRhvL’   ‘~/tmp/scratch/xvfb-run.siwPOK’ ‘~/tmp/scratch/xvfb-run.x96N4h’   ‘~/tmp/scratch/xvfb-run.zzssYV’
• DONE

Status: 3 NOTEs