• using R Under development (unstable) (2026-08-01 r90334)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-02 16:52:57 UTC
• checking for file ‘pleio/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘pleio’ version ‘1.9’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Jason Sinnwell <sinnwell.jason@mayo.edu>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: c(person(given = c("Daniel", "J"),                       family = "Schaid",                       role = "aut"),                person(given = "Jason",                       family = "Sinnwell",                       role = "cre",                       email = "sinnwell.jason@mayo.edu")) as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘pleio’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
• checking loading without being on the library search path ... [3s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [15s/16s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [4s/4s] OK   Running ‘test.pleio.glm.test.R’ [3s/4s]   Comparing ‘test.pleio.glm.test.Rout’ to ‘test.pleio.glm.test.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0Hqw7r’ ‘~/tmp/scratch/Rtmp0pTyv1’   ‘~/tmp/scratch/Rtmp0vWCuQ’ ‘~/tmp/scratch/Rtmp1UmY8C’   ‘~/tmp/scratch/Rtmp1eBR29’ ‘~/tmp/scratch/Rtmp28cg2B’   ‘~/tmp/scratch/Rtmp2EGtOR’ ‘~/tmp/scratch/Rtmp2bVrSk’   ‘~/tmp/scratch/Rtmp2llYWH’ ‘~/tmp/scratch/Rtmp3hj7zh’   ‘~/tmp/scratch/Rtmp3tw6Rm’ ‘~/tmp/scratch/Rtmp4ERo36’   ‘~/tmp/scratch/Rtmp4Q7xXa’ ‘~/tmp/scratch/Rtmp4igMdv’   ‘~/tmp/scratch/Rtmp4s5QAL’ ‘~/tmp/scratch/Rtmp57bvq7’   ‘~/tmp/scratch/Rtmp79N37h’ ‘~/tmp/scratch/Rtmp7LsWVB’   ‘~/tmp/scratch/Rtmp8NNBuM’ ‘~/tmp/scratch/Rtmp8RFx9p’   ‘~/tmp/scratch/Rtmp9OpaMa’ ‘~/tmp/scratch/Rtmp9PIADB’   ‘~/tmp/scratch/Rtmp9dO0xf’ ‘~/tmp/scratch/RtmpAcpK8A’   ‘~/tmp/scratch/RtmpAeCSaq’ ‘~/tmp/scratch/RtmpCSKJaR’   ‘~/tmp/scratch/RtmpCokjV3’ ‘~/tmp/scratch/RtmpDSan1c’   ‘~/tmp/scratch/RtmpDfFoda’ ‘~/tmp/scratch/RtmpDw0xPu’   ‘~/tmp/scratch/RtmpE9E0aW’ ‘~/tmp/scratch/RtmpESKtlj’   ‘~/tmp/scratch/RtmpEfNen1’ ‘~/tmp/scratch/RtmpEmfUJx’   ‘~/tmp/scratch/RtmpEoqTGw’ ‘~/tmp/scratch/RtmpFwmqX4’   ‘~/tmp/scratch/RtmpFxt46n’ ‘~/tmp/scratch/RtmpG0m6Cg’   ‘~/tmp/scratch/RtmpGJu5re’ ‘~/tmp/scratch/RtmpGdO1S2’   ‘~/tmp/scratch/RtmpGen2fL’ ‘~/tmp/scratch/RtmpHQGUf4’   ‘~/tmp/scratch/RtmpHozU3J’ ‘~/tmp/scratch/RtmpIFZiC4’   ‘~/tmp/scratch/RtmpIhdgCk’ ‘~/tmp/scratch/RtmpK4UwcG’   ‘~/tmp/scratch/RtmpKHoimA’ ‘~/tmp/scratch/RtmpKzkUcg’   ‘~/tmp/scratch/RtmpLCVZQ6’ ‘~/tmp/scratch/RtmpLIRPVo’   ‘~/tmp/scratch/RtmpLoaCqD’ ‘~/tmp/scratch/RtmpM3Xoaz’   ‘~/tmp/scratch/RtmpMHiNeY’ ‘~/tmp/scratch/RtmpNUinfq’   ‘~/tmp/scratch/RtmpOBcP7Q’ ‘~/tmp/scratch/RtmpOV4Cr1’   ‘~/tmp/scratch/RtmpP5HBxo’ ‘~/tmp/scratch/RtmpPa5vDH’   ‘~/tmp/scratch/RtmpPmFoHX’ ‘~/tmp/scratch/RtmpPvpwMK’   ‘~/tmp/scratch/RtmpQSiYDi’ ‘~/tmp/scratch/RtmpQcxssM’   ‘~/tmp/scratch/RtmpQqMPC2’ ‘~/tmp/scratch/RtmpQyXw7w’   ‘~/tmp/scratch/RtmpQyexQX’ ‘~/tmp/scratch/RtmpR0V4EH’   ‘~/tmp/scratch/RtmpR2YpN2’ ‘~/tmp/scratch/RtmpR5bQ9x’   ‘~/tmp/scratch/RtmpR7EE0S’ ‘~/tmp/scratch/RtmpRrUD6P’   ‘~/tmp/scratch/RtmpSi5BM3’ ‘~/tmp/scratch/RtmpT9F17t’   ‘~/tmp/scratch/RtmpTV2l3I’ ‘~/tmp/scratch/RtmpTnlLOq’   ‘~/tmp/scratch/RtmpTyVrNw’ ‘~/tmp/scratch/RtmpUND9vB’   ‘~/tmp/scratch/RtmpVDF6by’ ‘~/tmp/scratch/RtmpVVxocZ’   ‘~/tmp/scratch/RtmpVpkQ41’ ‘~/tmp/scratch/RtmpWatrgO’   ‘~/tmp/scratch/RtmpWvKRb2’ ‘~/tmp/scratch/RtmpXRB04n’   ‘~/tmp/scratch/RtmpXnN2o5’ ‘~/tmp/scratch/RtmpXwLHND’   ‘~/tmp/scratch/RtmpXy343r’ ‘~/tmp/scratch/RtmpYXETPA’   ‘~/tmp/scratch/RtmpYXlT0U’ ‘~/tmp/scratch/RtmpYe7nNF’   ‘~/tmp/scratch/RtmpYmp9Sg’ ‘~/tmp/scratch/RtmpYot0xB’   ‘~/tmp/scratch/RtmpZlgYsj’ ‘~/tmp/scratch/Rtmpa2jGv5’   ‘~/tmp/scratch/RtmpaH3C8Y’ ‘~/tmp/scratch/RtmpaaChYp’   ‘~/tmp/scratch/Rtmpb8HEbh’ ‘~/tmp/scratch/Rtmpbk6CtD’   ‘~/tmp/scratch/RtmpcLufxP’ ‘~/tmp/scratch/Rtmpcaunrf’   ‘~/tmp/scratch/RtmpcjswuU’ ‘~/tmp/scratch/Rtmpcw8kOs’   ‘~/tmp/scratch/RtmpdV5lpM’ ‘~/tmp/scratch/RtmpeXidAP’   ‘~/tmp/scratch/Rtmpei322v’ ‘~/tmp/scratch/Rtmpfe4s4c’   ‘~/tmp/scratch/Rtmpg3NuNT’ ‘~/tmp/scratch/RtmpgW2hKX’   ‘~/tmp/scratch/RtmpggHVDF’ ‘~/tmp/scratch/RtmpgrJ8eG’   ‘~/tmp/scratch/RtmphC9Okz’ ‘~/tmp/scratch/Rtmphcd5F9’   ‘~/tmp/scratch/Rtmphlng56’ ‘~/tmp/scratch/Rtmpi3ELQM’   ‘~/tmp/scratch/RtmpiGtNwz’ ‘~/tmp/scratch/RtmpiTRodP’   ‘~/tmp/scratch/RtmpiXAC0f’ ‘~/tmp/scratch/RtmpjCX2c5’   ‘~/tmp/scratch/RtmpjY0Ngx’ ‘~/tmp/scratch/RtmpkW4dby’   ‘~/tmp/scratch/RtmplSIOrD’ ‘~/tmp/scratch/RtmpltKZ7A’   ‘~/tmp/scratch/Rtmpm7dw6N’ ‘~/tmp/scratch/RtmpmNwTSW’   ‘~/tmp/scratch/Rtmpmjg3Ob’ ‘~/tmp/scratch/RtmpmmhimY’   ‘~/tmp/scratch/Rtmpnda5m9’ ‘~/tmp/scratch/RtmpoKeXUT’   ‘~/tmp/scratch/RtmpoYTxXC’ ‘~/tmp/scratch/RtmpohADYr’   ‘~/tmp/scratch/RtmpouLRZA’ ‘~/tmp/scratch/RtmppZ4bwH’   ‘~/tmp/scratch/RtmppdfUCn’ ‘~/tmp/scratch/RtmppvaLo8’   ‘~/tmp/scratch/RtmpqVdRQj’ ‘~/tmp/scratch/RtmpsDsnb3’   ‘~/tmp/scratch/RtmpsFEfUI’ ‘~/tmp/scratch/RtmpsIcU0w’   ‘~/tmp/scratch/RtmpsXAxT6’ ‘~/tmp/scratch/RtmpsxBAW4’   ‘~/tmp/scratch/RtmptAxKFG’ ‘~/tmp/scratch/RtmpttRk3L’   ‘~/tmp/scratch/RtmptufuDx’ ‘~/tmp/scratch/RtmpuQWDAt’   ‘~/tmp/scratch/RtmpucTepv’ ‘~/tmp/scratch/RtmpuinrHP’   ‘~/tmp/scratch/RtmpurBhBQ’ ‘~/tmp/scratch/RtmpuwrI6V’   ‘~/tmp/scratch/RtmpxoITe2’ ‘~/tmp/scratch/RtmpxsF2vm’   ‘~/tmp/scratch/Rtmpxw066f’ ‘~/tmp/scratch/RtmpyoRY6h’   ‘~/tmp/scratch/Rtmpzac0NJ’   ‘~/tmp/scratch/quarto-sessionff4f1b380d824146’   ‘~/tmp/scratch/xvfb-run.0KcRrz’ ‘~/tmp/scratch/xvfb-run.0l9G9e’   ‘~/tmp/scratch/xvfb-run.1lM0dT’ ‘~/tmp/scratch/xvfb-run.1ocL5f’   ‘~/tmp/scratch/xvfb-run.43uDKi’ ‘~/tmp/scratch/xvfb-run.5DlRuZ’   ‘~/tmp/scratch/xvfb-run.60mVs0’ ‘~/tmp/scratch/xvfb-run.8Z625U’   ‘~/tmp/scratch/xvfb-run.8fFjWP’ ‘~/tmp/scratch/xvfb-run.B0Tci5’   ‘~/tmp/scratch/xvfb-run.B6MVV3’ ‘~/tmp/scratch/xvfb-run.B7p3cb’   ‘~/tmp/scratch/xvfb-run.DSBH66’ ‘~/tmp/scratch/xvfb-run.EkDvwn’   ‘~/tmp/scratch/xvfb-run.G9My1O’ ‘~/tmp/scratch/xvfb-run.GaHHf1’   ‘~/tmp/scratch/xvfb-run.GnWMyj’ ‘~/tmp/scratch/xvfb-run.KHOMur’   ‘~/tmp/scratch/xvfb-run.KQw60r’ ‘~/tmp/scratch/xvfb-run.LBDxF4’   ‘~/tmp/scratch/xvfb-run.PKyx2f’ ‘~/tmp/scratch/xvfb-run.Rgz444’   ‘~/tmp/scratch/xvfb-run.Rk28Qi’ ‘~/tmp/scratch/xvfb-run.StYeOM’   ‘~/tmp/scratch/xvfb-run.TgOwTO’ ‘~/tmp/scratch/xvfb-run.TwNXw5’   ‘~/tmp/scratch/xvfb-run.UowUjH’ ‘~/tmp/scratch/xvfb-run.WfxWPe’   ‘~/tmp/scratch/xvfb-run.X3Rxxa’ ‘~/tmp/scratch/xvfb-run.XTMN9R’   ‘~/tmp/scratch/xvfb-run.Zn13MA’ ‘~/tmp/scratch/xvfb-run.ZsaiPA’   ‘~/tmp/scratch/xvfb-run.arZwoc’ ‘~/tmp/scratch/xvfb-run.cWLEyh’   ‘~/tmp/scratch/xvfb-run.ciDuzY’ ‘~/tmp/scratch/xvfb-run.dMJbZ9’   ‘~/tmp/scratch/xvfb-run.dPvzg8’ ‘~/tmp/scratch/xvfb-run.f4WtZy’   ‘~/tmp/scratch/xvfb-run.gOEzkb’ ‘~/tmp/scratch/xvfb-run.hfEjRS’   ‘~/tmp/scratch/xvfb-run.hn6i1o’ ‘~/tmp/scratch/xvfb-run.k6T3Le’   ‘~/tmp/scratch/xvfb-run.lNoaDY’ ‘~/tmp/scratch/xvfb-run.mRHDf7’   ‘~/tmp/scratch/xvfb-run.p8TipH’ ‘~/tmp/scratch/xvfb-run.pQH8fw’   ‘~/tmp/scratch/xvfb-run.pgJpD4’ ‘~/tmp/scratch/xvfb-run.r2YXYY’   ‘~/tmp/scratch/xvfb-run.rAgb9V’ ‘~/tmp/scratch/xvfb-run.rWRhvL’   ‘~/tmp/scratch/xvfb-run.rxfX8c’ ‘~/tmp/scratch/xvfb-run.siwPOK’   ‘~/tmp/scratch/xvfb-run.vNfS82’ ‘~/tmp/scratch/xvfb-run.x96N4h’   ‘~/tmp/scratch/xvfb-run.xZWtdV’ ‘~/tmp/scratch/xvfb-run.xzQ5I2’   ‘~/tmp/scratch/xvfb-run.zFW7tv’ ‘~/tmp/scratch/xvfb-run.zq9f8i’   ‘~/tmp/scratch/xvfb-run.zzssYV’   ‘/dev/shm/sm_segment.gimli1.1001.50ac0000.0’   ‘~/.cache/pocl/uncached/tempfile_LRD9Cu’
• DONE

Status: 2 NOTEs