• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 16:52:27 UTC
• checking for file ‘phyloseqGraphTest/DESCRIPTION’ ... OK
• this is package ‘phyloseqGraphTest’ version ‘0.1.1’
• checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Julia Fukuyama <julia.fukuyama@gmail.com>’ No Authors@R field in DESCRIPTION. Please add one, modifying   Authors@R: person(given = "Julia",                     family = "Fukuyama",                     role = c("aut", "cre"),                     email = "julia.fukuyama@gmail.com") as necessary.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘phyloseqGraphTest’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [7s/8s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/7s] OK
• checking whether the package can be unloaded cleanly ... [6s/7s] OK
• checking whether the namespace can be loaded with stated dependencies ... [6s/6s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/6s] OK
• checking loading without being on the library search path ... [7s/10s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [27s/35s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/16s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/15s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0EPkj6’ ‘~/tmp/scratch/Rtmp0ff3zN’   ‘~/tmp/scratch/Rtmp0ydVk1’ ‘~/tmp/scratch/Rtmp15gRip’   ‘~/tmp/scratch/Rtmp1Cxb6u’ ‘~/tmp/scratch/Rtmp1EFJgo’   ‘~/tmp/scratch/Rtmp1TaNyG’ ‘~/tmp/scratch/Rtmp2Dnbtb’   ‘~/tmp/scratch/Rtmp2ry5JN’ ‘~/tmp/scratch/Rtmp30uyLW’   ‘~/tmp/scratch/Rtmp31pabP’ ‘~/tmp/scratch/Rtmp3HqrMJ’   ‘~/tmp/scratch/Rtmp3KTwWT’ ‘~/tmp/scratch/Rtmp3lesFX’   ‘~/tmp/scratch/Rtmp3mWEBu’ ‘~/tmp/scratch/Rtmp4wwSlP’   ‘~/tmp/scratch/Rtmp6SKGh4’ ‘~/tmp/scratch/Rtmp6U7gdN’   ‘~/tmp/scratch/Rtmp7PUabc’ ‘~/tmp/scratch/Rtmp7l5BpW’   ‘~/tmp/scratch/Rtmp7mXiH1’ ‘~/tmp/scratch/Rtmp8Tuhqs’   ‘~/tmp/scratch/Rtmp9WZ8Ej’ ‘~/tmp/scratch/RtmpAJE3iz’   ‘~/tmp/scratch/RtmpAi3fjk’ ‘~/tmp/scratch/RtmpAolY4x’   ‘~/tmp/scratch/RtmpAtWqxo’ ‘~/tmp/scratch/RtmpBJc33c’   ‘~/tmp/scratch/RtmpBgtKAG’ ‘~/tmp/scratch/RtmpC57aXW’   ‘~/tmp/scratch/RtmpCEWpVI’ ‘~/tmp/scratch/RtmpCQ90gN’   ‘~/tmp/scratch/RtmpCsRJkq’ ‘~/tmp/scratch/RtmpD8geqe’   ‘~/tmp/scratch/RtmpDs3jI3’ ‘~/tmp/scratch/RtmpDzzJUe’   ‘~/tmp/scratch/RtmpEHIOdL’ ‘~/tmp/scratch/RtmpEaOQ4F’   ‘~/tmp/scratch/RtmpEhIgUf’ ‘~/tmp/scratch/RtmpEjqsMA’   ‘~/tmp/scratch/RtmpFbQt8F’ ‘~/tmp/scratch/RtmpGDewyo’   ‘~/tmp/scratch/RtmpGH5LCZ’ ‘~/tmp/scratch/RtmpGRoR5s’   ‘~/tmp/scratch/RtmpHwjvSK’ ‘~/tmp/scratch/RtmpHwvcHk’   ‘~/tmp/scratch/RtmpI3tPKF’ ‘~/tmp/scratch/RtmpI8OQCS’   ‘~/tmp/scratch/RtmpIIDPW8’ ‘~/tmp/scratch/RtmpIgtFv8’   ‘~/tmp/scratch/RtmpJ754cf’ ‘~/tmp/scratch/RtmpJSBChB’   ‘~/tmp/scratch/RtmpKDYi06’ ‘~/tmp/scratch/RtmpKaAHmz’   ‘~/tmp/scratch/RtmpKqDx27’ ‘~/tmp/scratch/RtmpKxO5Dr’   ‘~/tmp/scratch/RtmpLDJYLX’ ‘~/tmp/scratch/RtmpLDPpyY’   ‘~/tmp/scratch/RtmpLXcUbY’ ‘~/tmp/scratch/RtmpLZmwv7’   ‘~/tmp/scratch/RtmpMVkoAw’ ‘~/tmp/scratch/RtmpMjFe74’   ‘~/tmp/scratch/RtmpNLHcJs’ ‘~/tmp/scratch/RtmpNo3PYw’   ‘~/tmp/scratch/RtmpOLlV3O’ ‘~/tmp/scratch/RtmpONk9Dr’   ‘~/tmp/scratch/RtmpOrIMvl’ ‘~/tmp/scratch/RtmpOvWa62’   ‘~/tmp/scratch/RtmpPEuxiZ’ ‘~/tmp/scratch/RtmpPiPq0Y’   ‘~/tmp/scratch/RtmpQ91cng’ ‘~/tmp/scratch/RtmpQPY7yI’   ‘~/tmp/scratch/RtmpQsxOVz’ ‘~/tmp/scratch/RtmpQxvFPy’   ‘~/tmp/scratch/RtmpRC8fjn’ ‘~/tmp/scratch/RtmpRnaju5’   ‘~/tmp/scratch/RtmpSFujyh’ ‘~/tmp/scratch/RtmpSKU5cs’   ‘~/tmp/scratch/RtmpSRUHhq’ ‘~/tmp/scratch/RtmpSW2AE9’   ‘~/tmp/scratch/RtmpSdBjHV’ ‘~/tmp/scratch/RtmpSfl2py’   ‘~/tmp/scratch/RtmpTMj73o’ ‘~/tmp/scratch/RtmpTx9Dkh’   ‘~/tmp/scratch/RtmpTyUaS0’ ‘~/tmp/scratch/RtmpUS62eW’   ‘~/tmp/scratch/RtmpUp5o5w’ ‘~/tmp/scratch/RtmpUusAF2’   ‘~/tmp/scratch/RtmpV9QThI’ ‘~/tmp/scratch/RtmpVqu1jS’   ‘~/tmp/scratch/RtmpX0gUHd’ ‘~/tmp/scratch/RtmpX7QFFG’   ‘~/tmp/scratch/RtmpXAzOJk’ ‘~/tmp/scratch/RtmpXc0oMT’   ‘~/tmp/scratch/RtmpY7476t’ ‘~/tmp/scratch/RtmpYJzkjW’   ‘~/tmp/scratch/RtmpYmlrwU’ ‘~/tmp/scratch/RtmpaCIc77’   ‘~/tmp/scratch/RtmpaIpgaP’ ‘~/tmp/scratch/Rtmpam0h1j’   ‘~/tmp/scratch/RtmpanxCs9’ ‘~/tmp/scratch/RtmpawCr3C’   ‘~/tmp/scratch/RtmpbFN1PJ’ ‘~/tmp/scratch/RtmpbVXeKX’   ‘~/tmp/scratch/Rtmpbe8EIi’ ‘~/tmp/scratch/RtmpdiIgRZ’   ‘~/tmp/scratch/Rtmpe37KGS’ ‘~/tmp/scratch/RtmpeVlYWQ’   ‘~/tmp/scratch/RtmpeaXhCm’ ‘~/tmp/scratch/RtmpfK1CXq’   ‘~/tmp/scratch/RtmpfRzeAj’ ‘~/tmp/scratch/RtmpfTsE9h’   ‘~/tmp/scratch/RtmpfdRGMB’ ‘~/tmp/scratch/Rtmpg8lGSN’   ‘~/tmp/scratch/RtmpgVgrNp’ ‘~/tmp/scratch/RtmpgZN49Y’   ‘~/tmp/scratch/Rtmph3fjr0’ ‘~/tmp/scratch/RtmphLSW2o’   ‘~/tmp/scratch/RtmphcjH1U’ ‘~/tmp/scratch/Rtmpi1sXcM’   ‘~/tmp/scratch/RtmpjJyooj’ ‘~/tmp/scratch/RtmpjPtJH0’   ‘~/tmp/scratch/RtmpjsfOAh’ ‘~/tmp/scratch/RtmpjyVR0W’   ‘~/tmp/scratch/RtmpkRymUe’ ‘~/tmp/scratch/RtmpkUPaqF’   ‘~/tmp/scratch/RtmpkfSEbz’ ‘~/tmp/scratch/RtmplFwnGw’   ‘~/tmp/scratch/RtmplY85GJ’ ‘~/tmp/scratch/RtmplhNOWk’   ‘~/tmp/scratch/Rtmplxpf4b’ ‘~/tmp/scratch/RtmpmEzSYx’   ‘~/tmp/scratch/RtmpmGhONd’ ‘~/tmp/scratch/RtmpmRd81f’   ‘~/tmp/scratch/RtmpmSn471’ ‘~/tmp/scratch/RtmpmpkroH’   ‘~/tmp/scratch/RtmpmsjzUV’ ‘~/tmp/scratch/RtmpnDTKrV’   ‘~/tmp/scratch/RtmpnSjivO’ ‘~/tmp/scratch/Rtmpo9Ds7O’   ‘~/tmp/scratch/RtmpoylMaV’ ‘~/tmp/scratch/RtmppQlZK8’   ‘~/tmp/scratch/RtmppW0e6D’ ‘~/tmp/scratch/RtmppaWNDX’   ‘~/tmp/scratch/Rtmppg9N5r’ ‘~/tmp/scratch/Rtmppv5wWa’   ‘~/tmp/scratch/RtmpqlxrEN’ ‘~/tmp/scratch/RtmpqoIdJs’   ‘~/tmp/scratch/Rtmpr2mN9I’ ‘~/tmp/scratch/RtmprJH2g8’   ‘~/tmp/scratch/RtmprgjC1f’ ‘~/tmp/scratch/RtmpsulkT1’   ‘~/tmp/scratch/RtmpsyoWSG’ ‘~/tmp/scratch/RtmptAaCWm’   ‘~/tmp/scratch/RtmptWUFfw’ ‘~/tmp/scratch/Rtmpu5cRwi’   ‘~/tmp/scratch/Rtmpuif1Up’ ‘~/tmp/scratch/RtmpvJDcoJ’   ‘~/tmp/scratch/Rtmpwekomv’ ‘~/tmp/scratch/RtmpwqiF3I’   ‘~/tmp/scratch/Rtmpwvkkdl’ ‘~/tmp/scratch/Rtmpwx67W3’   ‘~/tmp/scratch/RtmpxCJgVn’ ‘~/tmp/scratch/RtmpyZqMlT’   ‘~/tmp/scratch/RtmpyciFEt’ ‘~/tmp/scratch/Rtmpyup9s0’   ‘~/tmp/scratch/Rtmpz7WcfQ’ ‘~/tmp/scratch/RtmpzacY84’   ‘~/tmp/scratch/quarto-sessiona6d0d56ea58bd19d’   ‘~/tmp/scratch/quarto-sessionfed4ad84e21a146’   ‘~/tmp/scratch/xvfb-run.1OqJIu’ ‘~/tmp/scratch/xvfb-run.1aN191’   ‘~/tmp/scratch/xvfb-run.2FdqiF’ ‘~/tmp/scratch/xvfb-run.2PRdXe’   ‘~/tmp/scratch/xvfb-run.3B2EZo’ ‘~/tmp/scratch/xvfb-run.54ftyJ’   ‘~/tmp/scratch/xvfb-run.66fetY’ ‘~/tmp/scratch/xvfb-run.74y1m8’   ‘~/tmp/scratch/xvfb-run.7vCUma’ ‘~/tmp/scratch/xvfb-run.83L7W8’   ‘~/tmp/scratch/xvfb-run.8b1KeU’ ‘~/tmp/scratch/xvfb-run.8gBejF’   ‘~/tmp/scratch/xvfb-run.9jJDdb’ ‘~/tmp/scratch/xvfb-run.A0R1Hd’   ‘~/tmp/scratch/xvfb-run.A8HWb7’ ‘~/tmp/scratch/xvfb-run.BAECH7’   ‘~/tmp/scratch/xvfb-run.BbSi2b’ ‘~/tmp/scratch/xvfb-run.BtoyQu’   ‘~/tmp/scratch/xvfb-run.BuXXmw’ ‘~/tmp/scratch/xvfb-run.CYCdiK’   ‘~/tmp/scratch/xvfb-run.Cjyz5w’ ‘~/tmp/scratch/xvfb-run.DYGutV’   ‘~/tmp/scratch/xvfb-run.Dx91ZX’ ‘~/tmp/scratch/xvfb-run.E6w6ur’   ‘~/tmp/scratch/xvfb-run.JIqdy9’ ‘~/tmp/scratch/xvfb-run.KUqAZW’   ‘~/tmp/scratch/xvfb-run.KYwNpA’ ‘~/tmp/scratch/xvfb-run.KoyHlR’   ‘~/tmp/scratch/xvfb-run.LRvmDj’ ‘~/tmp/scratch/xvfb-run.Lv03uC’   ‘~/tmp/scratch/xvfb-run.M8i7on’ ‘~/tmp/scratch/xvfb-run.NMTg87’   ‘~/tmp/scratch/xvfb-run.OWfnUe’ ‘~/tmp/scratch/xvfb-run.On9NTA’   ‘~/tmp/scratch/xvfb-run.OnnCeV’ ‘~/tmp/scratch/xvfb-run.QRx3Sh’   ‘~/tmp/scratch/xvfb-run.QcpmAA’ ‘~/tmp/scratch/xvfb-run.Rwutlg’   ‘~/tmp/scratch/xvfb-run.SGh2rF’ ‘~/tmp/scratch/xvfb-run.TPwuC4’   ‘~/tmp/scratch/xvfb-run.UFto6Y’ ‘~/tmp/scratch/xvfb-run.Ulan66’   ‘~/tmp/scratch/xvfb-run.VitMLk’ ‘~/tmp/scratch/xvfb-run.WFwiQV’   ‘~/tmp/scratch/xvfb-run.WXPh2P’ ‘~/tmp/scratch/xvfb-run.XOU2id’   ‘~/tmp/scratch/xvfb-run.XTfsoD’ ‘~/tmp/scratch/xvfb-run.bYBNWL’   ‘~/tmp/scratch/xvfb-run.bevqps’ ‘~/tmp/scratch/xvfb-run.cSk8Lt’   ‘~/tmp/scratch/xvfb-run.gUyd8w’ ‘~/tmp/scratch/xvfb-run.kHZr8b’   ‘~/tmp/scratch/xvfb-run.lcQYfw’ ‘~/tmp/scratch/xvfb-run.lj6L9t’   ‘~/tmp/scratch/xvfb-run.nTvv0T’ ‘~/tmp/scratch/xvfb-run.ni6YLY’   ‘~/tmp/scratch/xvfb-run.nuNmjI’ ‘~/tmp/scratch/xvfb-run.pQbBN2’   ‘~/tmp/scratch/xvfb-run.pRCnAr’ ‘~/tmp/scratch/xvfb-run.pYlMXF’   ‘~/tmp/scratch/xvfb-run.pxvu5M’ ‘~/tmp/scratch/xvfb-run.q72X7m’   ‘~/tmp/scratch/xvfb-run.qmsIes’ ‘~/tmp/scratch/xvfb-run.qquEvr’   ‘~/tmp/scratch/xvfb-run.s2Jwmr’ ‘~/tmp/scratch/xvfb-run.sNxh4B’   ‘~/tmp/scratch/xvfb-run.uIN6W7’ ‘~/tmp/scratch/xvfb-run.ujnfn5’   ‘~/tmp/scratch/xvfb-run.w2qwFE’ ‘~/tmp/scratch/xvfb-run.wShgim’   ‘~/tmp/scratch/xvfb-run.y1PoHj’ ‘~/tmp/scratch/xvfb-run.zOHaKt’   ‘~/tmp/scratch/xvfb-run.zp8fto’ ‘~/.cache/quarto/sass/sass.kv-shm’   ‘~/.cache/quarto/sass/sass.kv-wal’
• DONE

Status: 2 NOTEs