• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 16:51:41 UTC
• checking for file ‘phsmethods/DESCRIPTION’ ... OK
• this is package ‘phsmethods’ version ‘1.1.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘phsmethods’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/13s] OK   Running ‘spelling.R’ [0s/0s]   Running ‘testthat.R’ [10s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [10s/14s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0WISX0’ ‘~/tmp/scratch/Rtmp0hzMaF’   ‘~/tmp/scratch/Rtmp1Yhqdn’ ‘~/tmp/scratch/Rtmp2VLVX2’   ‘~/tmp/scratch/Rtmp3W52yJ’ ‘~/tmp/scratch/Rtmp3c5xGt’   ‘~/tmp/scratch/Rtmp4M34Ug’ ‘~/tmp/scratch/Rtmp5JQeBo’   ‘~/tmp/scratch/Rtmp5TXS2X’ ‘~/tmp/scratch/Rtmp5c8uIx’   ‘~/tmp/scratch/Rtmp65PMJe’ ‘~/tmp/scratch/Rtmp6RVp8d’   ‘~/tmp/scratch/Rtmp73Kaqh’ ‘~/tmp/scratch/Rtmp7HpzpK’   ‘~/tmp/scratch/Rtmp8G2qav’ ‘~/tmp/scratch/Rtmp8UI2Kp’   ‘~/tmp/scratch/Rtmp8XNN8Z’ ‘~/tmp/scratch/Rtmp9Hc9Jl’   ‘~/tmp/scratch/Rtmp9qahNy’ ‘~/tmp/scratch/RtmpAfRbVw’   ‘~/tmp/scratch/RtmpBRS7D7’ ‘~/tmp/scratch/RtmpCHsgMV’   ‘~/tmp/scratch/RtmpCJzon0’ ‘~/tmp/scratch/RtmpCYOpLY’   ‘~/tmp/scratch/RtmpCgXuXg’ ‘~/tmp/scratch/RtmpCh0v19’   ‘~/tmp/scratch/RtmpCoA3mf’ ‘~/tmp/scratch/RtmpCvMJSs’   ‘~/tmp/scratch/RtmpCzFJzP’ ‘~/tmp/scratch/RtmpDZM5vZ’   ‘~/tmp/scratch/RtmpDvyk0o’ ‘~/tmp/scratch/RtmpEOuxmQ’   ‘~/tmp/scratch/RtmpEQT53u’ ‘~/tmp/scratch/RtmpEnc0pz’   ‘~/tmp/scratch/RtmpF1BxtC’ ‘~/tmp/scratch/RtmpF77Nx3’   ‘~/tmp/scratch/RtmpFDxyMj’ ‘~/tmp/scratch/RtmpFQf3qD’   ‘~/tmp/scratch/RtmpG0903g’ ‘~/tmp/scratch/RtmpGzq6wf’   ‘~/tmp/scratch/RtmpI0ACq8’ ‘~/tmp/scratch/RtmpIhxzhQ’   ‘~/tmp/scratch/RtmpJgKmCf’ ‘~/tmp/scratch/RtmpKvAlAo’   ‘~/tmp/scratch/RtmpLhtger’ ‘~/tmp/scratch/RtmpLwkwdk’   ‘~/tmp/scratch/RtmpMj0pz3’ ‘~/tmp/scratch/RtmpNGMUE7’   ‘~/tmp/scratch/RtmpNToQSf’ ‘~/tmp/scratch/RtmpNnhF7V’   ‘~/tmp/scratch/RtmpOAQqxT’ ‘~/tmp/scratch/RtmpOGb8Yo’   ‘~/tmp/scratch/RtmpPZUVTZ’ ‘~/tmp/scratch/RtmpPnKoXH’   ‘~/tmp/scratch/RtmpPpS8Df’ ‘~/tmp/scratch/RtmpQKSyb4’   ‘~/tmp/scratch/RtmpQUoyLu’ ‘~/tmp/scratch/RtmpRKcj29’   ‘~/tmp/scratch/RtmpRKjqqz’ ‘~/tmp/scratch/RtmpSAX2C6’   ‘~/tmp/scratch/RtmpTG5bRV’ ‘~/tmp/scratch/RtmpTrWvg0’   ‘~/tmp/scratch/RtmpUArTHG’ ‘~/tmp/scratch/RtmpUO62IA’   ‘~/tmp/scratch/RtmpVWQGJs’ ‘~/tmp/scratch/RtmpWUjEhm’   ‘~/tmp/scratch/RtmpWs0L6e’ ‘~/tmp/scratch/RtmpXVt5Cm’   ‘~/tmp/scratch/RtmpXZScfk’ ‘~/tmp/scratch/RtmpYxMYeG’   ‘~/tmp/scratch/RtmpZCgi8V’ ‘~/tmp/scratch/RtmpZXh4vj’   ‘~/tmp/scratch/RtmpZc3y35’ ‘~/tmp/scratch/RtmpZrAqCk’   ‘~/tmp/scratch/RtmpaXyaLY’ ‘~/tmp/scratch/RtmpawtIrQ’   ‘~/tmp/scratch/RtmpbQ87Rr’ ‘~/tmp/scratch/RtmpcJDx8C’   ‘~/tmp/scratch/Rtmpcnf7ev’ ‘~/tmp/scratch/RtmpdBnfvL’   ‘~/tmp/scratch/RtmpdTAf8T’ ‘~/tmp/scratch/RtmpdivKgM’   ‘~/tmp/scratch/RtmpdlokJP’ ‘~/tmp/scratch/RtmpdzUqZQ’   ‘~/tmp/scratch/Rtmpe7URjs’ ‘~/tmp/scratch/Rtmpf9849q’   ‘~/tmp/scratch/RtmpfGevF0’ ‘~/tmp/scratch/RtmpfMxlu9’   ‘~/tmp/scratch/RtmpfNZKHo’ ‘~/tmp/scratch/Rtmpfi5h7I’   ‘~/tmp/scratch/RtmpfjdmBu’ ‘~/tmp/scratch/Rtmpg5UILb’   ‘~/tmp/scratch/RtmpgCL3IV’ ‘~/tmp/scratch/RtmpgLAJ0r’   ‘~/tmp/scratch/RtmpglTMSs’ ‘~/tmp/scratch/RtmpglgJ95’   ‘~/tmp/scratch/RtmphROcAu’ ‘~/tmp/scratch/RtmphVujzG’   ‘~/tmp/scratch/RtmphnigY3’ ‘~/tmp/scratch/RtmpiM3aeJ’   ‘~/tmp/scratch/RtmpjXLDmV’ ‘~/tmp/scratch/RtmpjoGNab’   ‘~/tmp/scratch/RtmpkHewIx’ ‘~/tmp/scratch/RtmpkY9otA’   ‘~/tmp/scratch/RtmpkvxuDe’ ‘~/tmp/scratch/Rtmpl9r5JT’   ‘~/tmp/scratch/RtmplAq6ne’ ‘~/tmp/scratch/RtmplpLg8u’   ‘~/tmp/scratch/Rtmplrsg4P’ ‘~/tmp/scratch/RtmpnT9m5i’   ‘~/tmp/scratch/RtmpnYCkfb’ ‘~/tmp/scratch/RtmpoJXHqw’   ‘~/tmp/scratch/RtmppC8dgo’ ‘~/tmp/scratch/RtmppGFtPr’   ‘~/tmp/scratch/RtmppHO9L7’ ‘~/tmp/scratch/Rtmpq6E3bA’   ‘~/tmp/scratch/Rtmpqd2HoT’ ‘~/tmp/scratch/RtmpqdhJO3’   ‘~/tmp/scratch/RtmprCKsNq’ ‘~/tmp/scratch/RtmprIR0RU’   ‘~/tmp/scratch/Rtmps7oItE’ ‘~/tmp/scratch/RtmpsPk5qK’   ‘~/tmp/scratch/RtmpsfHSHy’ ‘~/tmp/scratch/RtmpsglmMi’   ‘~/tmp/scratch/RtmpuKIhbp’ ‘~/tmp/scratch/RtmpucH0WQ’   ‘~/tmp/scratch/Rtmpv2dXVJ’ ‘~/tmp/scratch/RtmpvToiEA’   ‘~/tmp/scratch/RtmpwlIBW2’ ‘~/tmp/scratch/Rtmpx6wCFf’   ‘~/tmp/scratch/RtmpxHL1Vd’ ‘~/tmp/scratch/RtmpxXvNM1’   ‘~/tmp/scratch/RtmpxeBMWU’ ‘~/tmp/scratch/RtmpxgpSI2’   ‘~/tmp/scratch/RtmpyBy2Ue’ ‘~/tmp/scratch/RtmpyZYcYX’   ‘~/tmp/scratch/RtmpycvFXQ’ ‘~/tmp/scratch/Rtmpyn48bX’   ‘~/tmp/scratch/RtmpzXo50Y’ ‘~/tmp/scratch/Rtmpzf4zGD’   ‘~/tmp/scratch/quarto-session4094724165a23f1b’   ‘~/tmp/scratch/xvfb-run.1c8RhS’ ‘~/tmp/scratch/xvfb-run.2TTj6A’   ‘~/tmp/scratch/xvfb-run.4iN4rs’ ‘~/tmp/scratch/xvfb-run.69y0nt’   ‘~/tmp/scratch/xvfb-run.6GsgxU’ ‘~/tmp/scratch/xvfb-run.6VIAzD’   ‘~/tmp/scratch/xvfb-run.6VVecq’ ‘~/tmp/scratch/xvfb-run.847wcY’   ‘~/tmp/scratch/xvfb-run.AqV9w0’ ‘~/tmp/scratch/xvfb-run.B0MsWt’   ‘~/tmp/scratch/xvfb-run.Bc3jYF’ ‘~/tmp/scratch/xvfb-run.BpgLs1’   ‘~/tmp/scratch/xvfb-run.CRLk4j’ ‘~/tmp/scratch/xvfb-run.Gl0dXi’   ‘~/tmp/scratch/xvfb-run.IK4hhO’ ‘~/tmp/scratch/xvfb-run.JitKAe’   ‘~/tmp/scratch/xvfb-run.Ktsrl0’ ‘~/tmp/scratch/xvfb-run.LrrS6q’   ‘~/tmp/scratch/xvfb-run.NAB3qC’ ‘~/tmp/scratch/xvfb-run.OvCr1t’   ‘~/tmp/scratch/xvfb-run.QKD4XH’ ‘~/tmp/scratch/xvfb-run.QpQQn5’   ‘~/tmp/scratch/xvfb-run.RLb7lo’ ‘~/tmp/scratch/xvfb-run.SwGdGo’   ‘~/tmp/scratch/xvfb-run.VQY0o9’ ‘~/tmp/scratch/xvfb-run.VZYrbq’   ‘~/tmp/scratch/xvfb-run.WFhcre’ ‘~/tmp/scratch/xvfb-run.WG8fd9’   ‘~/tmp/scratch/xvfb-run.XU8qwA’ ‘~/tmp/scratch/xvfb-run.Y33jVj’   ‘~/tmp/scratch/xvfb-run.YV8Dff’ ‘~/tmp/scratch/xvfb-run.Z2v44L’   ‘~/tmp/scratch/xvfb-run.aDL1YJ’ ‘~/tmp/scratch/xvfb-run.aLcG6Q’   ‘~/tmp/scratch/xvfb-run.cK3vT8’ ‘~/tmp/scratch/xvfb-run.ei4AKC’   ‘~/tmp/scratch/xvfb-run.fL656t’ ‘~/tmp/scratch/xvfb-run.gNV4Sl’   ‘~/tmp/scratch/xvfb-run.gjdmGx’ ‘~/tmp/scratch/xvfb-run.gkN69l’   ‘~/tmp/scratch/xvfb-run.gyXRvz’ ‘~/tmp/scratch/xvfb-run.hsa5WZ’   ‘~/tmp/scratch/xvfb-run.iauinB’ ‘~/tmp/scratch/xvfb-run.jEHJdf’   ‘~/tmp/scratch/xvfb-run.qIpKzb’ ‘~/tmp/scratch/xvfb-run.qRX468’   ‘~/tmp/scratch/xvfb-run.rTu2VS’ ‘~/tmp/scratch/xvfb-run.sQCQCc’   ‘~/tmp/scratch/xvfb-run.tA2RFu’ ‘~/tmp/scratch/xvfb-run.tEUyzU’   ‘~/tmp/scratch/xvfb-run.tHDl8O’ ‘~/tmp/scratch/xvfb-run.vOUe0g’   ‘~/tmp/scratch/xvfb-run.yPp0yu’ ‘~/tmp/scratch/xvfb-run.yhiETx’   ‘~/tmp/scratch/xvfb-run.yvlwxR’ ‘~/tmp/scratch/xvfb-run.ywXy70’   ‘~/tmp/scratch/xvfb-run.z9yukF’ ‘~/tmp/scratch/xvfb-run.zeDa5j’   ‘~/tmp/scratch/xvfb-run.znSLpe’
• DONE

Status: 1 NOTE