* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘perms’ ...
** this is package ‘perms’ version ‘1.14’
** package ‘perms’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16-20260425-1) 16.0.1 20260425 (prerelease) [gcc-16 r16-8812-gd9c07462a22]’
make[1]: Entering directory '/tmp/RtmpDux1p4/R.INSTALL1cccee7220f2fe/perms/src'
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c C_get_log_permanent.c -o C_get_log_permanent.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c get_alphabetagamma.c -o get_alphabetagamma.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c get_log_ML.c -o get_log_ML.o
get_log_ML.c: In function ‘C_get_log_ML’:
get_log_ML.c:12:13: warning: unused variable ‘debug’ [-Wunused-variable]
12 | int debug = *(INTEGER(debugSEXP));
| ^~~~~
get_log_ML.c: In function ‘C_get_log_ML_bioassay’:
get_log_ML.c:74:13: warning: unused variable ‘debug’ [-Wunused-variable]
74 | int debug = *(INTEGER(debugSEXP));
| ^~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c help_functions.c -o help_functions.o
help_functions.c: In function ‘update_dict’:
help_functions.c:70:13: warning: variable ‘collcount’ set but not used [-Wunused-but-set-variable=]
70 | int collcount = 0;
| ^~~~~~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c methods.c -o methods.o
methods.c: In function ‘reduction’:
methods.c:588:13: warning: variable ‘cc’ set but not used [-Wunused-but-set-variable=]
588 | int cc = 0;
| ^~
methods.c: In function ‘reverse_reduction’:
methods.c:843:13: warning: variable ‘num_nonzeros’ set but not used [-Wunused-but-set-variable=]
843 | int num_nonzeros = 0;
| ^~~~~~~~~~~~
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c methods_sparse.c -o methods_sparse.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xxhash.c -o xxhash.o
gcc-16 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o perms.so C_get_log_permanent.o get_alphabetagamma.o get_log_ML.o help_functions.o init.o methods.o methods_sparse.o xxhash.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpDux1p4/R.INSTALL1cccee7220f2fe/perms/src'
make[1]: Entering directory '/tmp/RtmpDux1p4/R.INSTALL1cccee7220f2fe/perms/src'
make[1]: Leaving directory '/tmp/RtmpDux1p4/R.INSTALL1cccee7220f2fe/perms/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-perms/00new/perms/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (perms)