- using R Under development (unstable) (2026-07-30 r90327)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-16 (Debian 16.1.0-3) 16.1.0
GNU Fortran (Debian 16.1.0-3) 16.1.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
* current time: 2026-07-31 16:46:11 UTC
- checking for file ‘patterncausality/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘patterncausality’ version ‘0.2.4’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [2s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘patterncausality’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/14s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [25s/32s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
plot.pc_matrix 5.015 0.052 7.360
summary.pc_matrix 4.812 0.186 6.679
pc_matrix 4.567 0.057 6.105
print.pc_matrix 4.524 0.008 5.135
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/5s] OK
Running ‘testthat.R’ [3s/4s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [71s/96s] OK
- checking PDF version of manual ... [4s/7s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- checking for new files in some other directories ... NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp0tT8rz’ ‘~/tmp/scratch/Rtmp12KXDF’
‘~/tmp/scratch/Rtmp159K4k’ ‘~/tmp/scratch/Rtmp1BWSju’
‘~/tmp/scratch/Rtmp1Zpmjv’ ‘~/tmp/scratch/Rtmp1gmj5s’
‘~/tmp/scratch/Rtmp2ICQMD’ ‘~/tmp/scratch/Rtmp2IVDpn’
‘~/tmp/scratch/Rtmp2Me0KI’ ‘~/tmp/scratch/Rtmp3NhI0W’
‘~/tmp/scratch/Rtmp3qNLRb’ ‘~/tmp/scratch/Rtmp4Eepm2’
‘~/tmp/scratch/Rtmp4ZMzwG’ ‘~/tmp/scratch/Rtmp5aLUH5’
‘~/tmp/scratch/Rtmp63piWt’ ‘~/tmp/scratch/Rtmp6fWbDn’
‘~/tmp/scratch/Rtmp6oWY7n’ ‘~/tmp/scratch/Rtmp795RHN’
‘~/tmp/scratch/Rtmp7qEKNQ’ ‘~/tmp/scratch/Rtmp8QwCTZ’
‘~/tmp/scratch/Rtmp905k05’ ‘~/tmp/scratch/Rtmp928gVy’
‘~/tmp/scratch/Rtmp9AIR0L’ ‘~/tmp/scratch/Rtmp9Qz1JH’
‘~/tmp/scratch/Rtmp9yoT1z’ ‘~/tmp/scratch/Rtmp9yuNrr’
‘~/tmp/scratch/RtmpBr2u6I’ ‘~/tmp/scratch/RtmpC1wxEs’
‘~/tmp/scratch/RtmpCLXGy3’ ‘~/tmp/scratch/RtmpDSH0Mi’
‘~/tmp/scratch/RtmpDkWnD6’ ‘~/tmp/scratch/RtmpDxAk4u’
‘~/tmp/scratch/RtmpESmWl6’ ‘~/tmp/scratch/RtmpEgPrPT’
‘~/tmp/scratch/RtmpFXn8lN’ ‘~/tmp/scratch/RtmpFqxCaq’
‘~/tmp/scratch/RtmpGQdqRx’ ‘~/tmp/scratch/RtmpGSdX8M’
‘~/tmp/scratch/RtmpGarmrd’ ‘~/tmp/scratch/RtmpH11Qq7’
‘~/tmp/scratch/RtmpHYiyuv’ ‘~/tmp/scratch/RtmpHd49Ks’
‘~/tmp/scratch/RtmpHnug8r’ ‘~/tmp/scratch/RtmpHttuqx’
‘~/tmp/scratch/RtmpI6fGsw’ ‘~/tmp/scratch/RtmpIJUgju’
‘~/tmp/scratch/RtmpJboFiS’ ‘~/tmp/scratch/RtmpJi71jH’
‘~/tmp/scratch/RtmpJm06ts’ ‘~/tmp/scratch/RtmpL69kN0’
‘~/tmp/scratch/RtmpMnH60S’ ‘~/tmp/scratch/RtmpMqEGNJ’
‘~/tmp/scratch/RtmpMvUvV4’ ‘~/tmp/scratch/RtmpNZkbyx’
‘~/tmp/scratch/RtmpOPHbo4’ ‘~/tmp/scratch/RtmpOTUFFB’
‘~/tmp/scratch/RtmpOkcSWg’ ‘~/tmp/scratch/RtmpPiLeAc’
‘~/tmp/scratch/RtmpPjmMuF’ ‘~/tmp/scratch/RtmpRLF7iE’
‘~/tmp/scratch/RtmpRUjEKe’ ‘~/tmp/scratch/RtmpSr1Atz’
‘~/tmp/scratch/RtmpT09UZi’ ‘~/tmp/scratch/RtmpTQhI0H’
‘~/tmp/scratch/RtmpTZJMuy’ ‘~/tmp/scratch/RtmpTbbhiG’
‘~/tmp/scratch/RtmpTbiaoA’ ‘~/tmp/scratch/RtmpTc6qJu’
‘~/tmp/scratch/RtmpThsMfv’ ‘~/tmp/scratch/RtmpURUo9e’
‘~/tmp/scratch/RtmpUqzWQC’ ‘~/tmp/scratch/RtmpUuQkwB’
‘~/tmp/scratch/RtmpVKnZuc’ ‘~/tmp/scratch/RtmpWUGhfI’
‘~/tmp/scratch/RtmpXO7MR7’ ‘~/tmp/scratch/RtmpXV1oJe’
‘~/tmp/scratch/RtmpXnoBsH’ ‘~/tmp/scratch/RtmpY1aYlY’
‘~/tmp/scratch/RtmpY7TeiT’ ‘~/tmp/scratch/RtmpYAoYIO’
‘~/tmp/scratch/RtmpYFPTrE’ ‘~/tmp/scratch/RtmpYqMbFB’
‘~/tmp/scratch/RtmpZ1Zow7’ ‘~/tmp/scratch/RtmpZPNzLQ’
‘~/tmp/scratch/RtmpZQTVt8’ ‘~/tmp/scratch/RtmpZoLwWa’
‘~/tmp/scratch/Rtmpa2axtw’ ‘~/tmp/scratch/Rtmpay8Jka’
‘~/tmp/scratch/RtmpbjUS5N’ ‘~/tmp/scratch/Rtmpbwfn5D’
‘~/tmp/scratch/RtmpcstfFB’ ‘~/tmp/scratch/RtmpeAPfav’
‘~/tmp/scratch/Rtmpg3XOZC’ ‘~/tmp/scratch/RtmpgABqn3’
‘~/tmp/scratch/RtmpgKKoLu’ ‘~/tmp/scratch/RtmpgWD1PC’
‘~/tmp/scratch/RtmpgZHtRI’ ‘~/tmp/scratch/RtmpgcIuzy’
‘~/tmp/scratch/RtmpggV33F’ ‘~/tmp/scratch/Rtmpggjc48’
‘~/tmp/scratch/Rtmph2NMtZ’ ‘~/tmp/scratch/RtmphkWnqz’
‘~/tmp/scratch/Rtmpi6TMHw’ ‘~/tmp/scratch/RtmpiemoDz’
‘~/tmp/scratch/RtmpjAx3fz’ ‘~/tmp/scratch/RtmpjDkzud’
‘~/tmp/scratch/RtmpjX5YY4’ ‘~/tmp/scratch/Rtmpjua8gk’
‘~/tmp/scratch/RtmpjxXuD1’ ‘~/tmp/scratch/RtmpkPcDbD’
‘~/tmp/scratch/RtmpkhsTHt’ ‘~/tmp/scratch/Rtmpko3SkP’
‘~/tmp/scratch/RtmpltoXBi’ ‘~/tmp/scratch/RtmpmIEZoQ’
‘~/tmp/scratch/Rtmpmmn9ig’ ‘~/tmp/scratch/Rtmpmp5tom’
‘~/tmp/scratch/RtmpnOE64a’ ‘~/tmp/scratch/Rtmpnd7KfA’
‘~/tmp/scratch/Rtmpng7iEz’ ‘~/tmp/scratch/RtmpnybCli’
‘~/tmp/scratch/Rtmpo5jnHi’ ‘~/tmp/scratch/RtmpoDBcrD’
‘~/tmp/scratch/RtmpoIxXb7’ ‘~/tmp/scratch/RtmpoKZJ20’
‘~/tmp/scratch/RtmpomnfPg’ ‘~/tmp/scratch/RtmppBow6r’
‘~/tmp/scratch/RtmppICu3f’ ‘~/tmp/scratch/RtmppNr83D’
‘~/tmp/scratch/RtmppTfh77’ ‘~/tmp/scratch/RtmppvBEts’
‘~/tmp/scratch/Rtmpq4BJDX’ ‘~/tmp/scratch/RtmpqDuKsm’
‘~/tmp/scratch/RtmpqUurbM’ ‘~/tmp/scratch/RtmpqtUCiD’
‘~/tmp/scratch/RtmprE6mvA’ ‘~/tmp/scratch/RtmprasTCO’
‘~/tmp/scratch/RtmprlSq1F’ ‘~/tmp/scratch/Rtmps4VuCn’
‘~/tmp/scratch/RtmpsHjIsv’ ‘~/tmp/scratch/RtmpsiiGHo’
‘~/tmp/scratch/RtmpspBN8R’ ‘~/tmp/scratch/RtmpsppD1B’
‘~/tmp/scratch/RtmptQdMjD’ ‘~/tmp/scratch/Rtmptxu6JC’
‘~/tmp/scratch/Rtmpu60b92’ ‘~/tmp/scratch/RtmpuJZJ5X’
‘~/tmp/scratch/RtmpuNAhMQ’ ‘~/tmp/scratch/Rtmpv7jX9C’
‘~/tmp/scratch/RtmpvfDNov’ ‘~/tmp/scratch/Rtmpvq5YGX’
‘~/tmp/scratch/RtmpwgFKmP’ ‘~/tmp/scratch/RtmpxgnNCt’
‘~/tmp/scratch/Rtmpxj8gSp’ ‘~/tmp/scratch/RtmpxpED2g’
‘~/tmp/scratch/RtmpxwHLNG’ ‘~/tmp/scratch/Rtmpy3mNIZ’
‘~/tmp/scratch/RtmpyFDnVf’ ‘~/tmp/scratch/RtmpyGJ0i3’
‘~/tmp/scratch/RtmpyiOtVK’ ‘~/tmp/scratch/Rtmpymj4GA’
‘~/tmp/scratch/RtmpzRqznu’ ‘~/tmp/scratch/Rtmpzizpfp’
‘~/tmp/scratch/RtmpzllKY9’ ‘~/tmp/scratch/RtmpzqFDYR’
‘~/tmp/scratch/xvfb-run.1VKI24’ ‘~/tmp/scratch/xvfb-run.2G3gsY’
‘~/tmp/scratch/xvfb-run.3ffO3A’ ‘~/tmp/scratch/xvfb-run.40PLAQ’
‘~/tmp/scratch/xvfb-run.5ffa9g’ ‘~/tmp/scratch/xvfb-run.6JIGIl’
‘~/tmp/scratch/xvfb-run.72QtBg’ ‘~/tmp/scratch/xvfb-run.7m1pEs’
‘~/tmp/scratch/xvfb-run.81tuRY’ ‘~/tmp/scratch/xvfb-run.9gnkWQ’
‘~/tmp/scratch/xvfb-run.9q5tNE’ ‘~/tmp/scratch/xvfb-run.AHwiOF’
‘~/tmp/scratch/xvfb-run.Aw2DLX’ ‘~/tmp/scratch/xvfb-run.BTBczy’
‘~/tmp/scratch/xvfb-run.BiUPF9’ ‘~/tmp/scratch/xvfb-run.CX2lH0’
‘~/tmp/scratch/xvfb-run.F27wPb’ ‘~/tmp/scratch/xvfb-run.GwOGZ6’
‘~/tmp/scratch/xvfb-run.Hu9cBT’ ‘~/tmp/scratch/xvfb-run.Hw5OxD’
‘~/tmp/scratch/xvfb-run.IT3Eam’ ‘~/tmp/scratch/xvfb-run.KYgvIT’
‘~/tmp/scratch/xvfb-run.Luvl0S’ ‘~/tmp/scratch/xvfb-run.MQsQcE’
‘~/tmp/scratch/xvfb-run.NRGLag’ ‘~/tmp/scratch/xvfb-run.QTq6Tk’
‘~/tmp/scratch/xvfb-run.SsD3eH’ ‘~/tmp/scratch/xvfb-run.UQEcmC’
‘~/tmp/scratch/xvfb-run.V2YXl5’ ‘~/tmp/scratch/xvfb-run.V8ZRzR’
‘~/tmp/scratch/xvfb-run.Vm6L1w’ ‘~/tmp/scratch/xvfb-run.VvsSky’
‘~/tmp/scratch/xvfb-run.X5XHBF’ ‘~/tmp/scratch/xvfb-run.X7RnHh’
‘~/tmp/scratch/xvfb-run.XujblN’ ‘~/tmp/scratch/xvfb-run.bwe40k’
‘~/tmp/scratch/xvfb-run.cBdHQu’ ‘~/tmp/scratch/xvfb-run.cHJnbn’
‘~/tmp/scratch/xvfb-run.ce7ku8’ ‘~/tmp/scratch/xvfb-run.dpazio’
‘~/tmp/scratch/xvfb-run.eVxN1m’ ‘~/tmp/scratch/xvfb-run.fd5Kqc’
‘~/tmp/scratch/xvfb-run.g3gZD0’ ‘~/tmp/scratch/xvfb-run.gfFNiE’
‘~/tmp/scratch/xvfb-run.h96Tvn’ ‘~/tmp/scratch/xvfb-run.hPqpsY’
‘~/tmp/scratch/xvfb-run.iEAphM’ ‘~/tmp/scratch/xvfb-run.il9MNn’
‘~/tmp/scratch/xvfb-run.j6aPmO’ ‘~/tmp/scratch/xvfb-run.jyPfKh’
‘~/tmp/scratch/xvfb-run.kd1rR3’ ‘~/tmp/scratch/xvfb-run.lfOzcP’
‘~/tmp/scratch/xvfb-run.mrrs8C’ ‘~/tmp/scratch/xvfb-run.o6k9T8’
‘~/tmp/scratch/xvfb-run.pBUDs4’ ‘~/tmp/scratch/xvfb-run.pF9UTM’
‘~/tmp/scratch/xvfb-run.pyNaO1’ ‘~/tmp/scratch/xvfb-run.qApWe4’
‘~/tmp/scratch/xvfb-run.qC2iVh’ ‘~/tmp/scratch/xvfb-run.qCUbDx’
‘~/tmp/scratch/xvfb-run.qhOaO6’ ‘~/tmp/scratch/xvfb-run.rPifQy’
‘~/tmp/scratch/xvfb-run.smA6yg’ ‘~/tmp/scratch/xvfb-run.tGPgSH’
‘~/tmp/scratch/xvfb-run.unTTG5’ ‘~/tmp/scratch/xvfb-run.unqaur’
‘~/tmp/scratch/xvfb-run.vcZ8zo’ ‘~/tmp/scratch/xvfb-run.vy4EXM’
‘~/tmp/scratch/xvfb-run.xU6QZw’ ‘~/tmp/scratch/xvfb-run.xsvKjL’
‘~/tmp/scratch/xvfb-run.yHdkLO’ ‘~/tmp/scratch/xvfb-run.zl5sdJ’
‘/dev/shm/sm_segment.gimli1.1001.19120000.0’
‘/dev/shm/sm_segment.gimli1.1001.1a2a0000.0’
‘/dev/shm/sm_segment.gimli1.1001.1bb70000.0’
‘/dev/shm/sm_segment.gimli1.1001.1e960000.0’
‘/dev/shm/sm_segment.gimli1.1001.24340000.0’
‘/dev/shm/sm_segment.gimli1.1001.26970000.0’
‘/dev/shm/sm_segment.gimli1.1001.32d90000.0’
‘/dev/shm/sm_segment.gimli1.1001.3560000.0’
‘/dev/shm/sm_segment.gimli1.1001.3da00000.0’
‘/dev/shm/sm_segment.gimli1.1001.3e800000.0’
‘/dev/shm/sm_segment.gimli1.1001.49c60000.0’
‘/dev/shm/sm_segment.gimli1.1001.4c070000.0’
‘/dev/shm/sm_segment.gimli1.1001.4f430000.0’
‘/dev/shm/sm_segment.gimli1.1001.51d60000.0’
‘/dev/shm/sm_segment.gimli1.1001.5acb0000.0’
‘/dev/shm/sm_segment.gimli1.1001.5d0000.0’
‘/dev/shm/sm_segment.gimli1.1001.5f8a0000.0’
‘/dev/shm/sm_segment.gimli1.1001.67f30000.0’
‘/dev/shm/sm_segment.gimli1.1001.77bf0000.0’
‘/dev/shm/sm_segment.gimli1.1001.7bbd0000.0’
‘/dev/shm/sm_segment.gimli1.1001.7e70000.0’
‘/dev/shm/sm_segment.gimli1.1001.81700000.0’
‘/dev/shm/sm_segment.gimli1.1001.82550000.0’
‘/dev/shm/sm_segment.gimli1.1001.82d60000.0’
‘/dev/shm/sm_segment.gimli1.1001.96900000.0’
‘/dev/shm/sm_segment.gimli1.1001.9d940000.0’
‘/dev/shm/sm_segment.gimli1.1001.9e390000.0’
‘/dev/shm/sm_segment.gimli1.1001.a2ce0000.0’
‘/dev/shm/sm_segment.gimli1.1001.a63a0000.0’
‘/dev/shm/sm_segment.gimli1.1001.a6cf0000.0’
‘/dev/shm/sm_segment.gimli1.1001.adfd0000.0’
‘/dev/shm/sm_segment.gimli1.1001.b8180000.0’
‘/dev/shm/sm_segment.gimli1.1001.bad60000.0’
‘/dev/shm/sm_segment.gimli1.1001.bda10000.0’
‘/dev/shm/sm_segment.gimli1.1001.be240000.0’
‘/dev/shm/sm_segment.gimli1.1001.c5b70000.0’
‘/dev/shm/sm_segment.gimli1.1001.c6f50000.0’
‘/dev/shm/sm_segment.gimli1.1001.c7640000.0’
‘/dev/shm/sm_segment.gimli1.1001.cd7c0000.0’
‘/dev/shm/sm_segment.gimli1.1001.d0b10000.0’
‘/dev/shm/sm_segment.gimli1.1001.d4f00000.0’
‘/dev/shm/sm_segment.gimli1.1001.e9660000.0’
‘/dev/shm/sm_segment.gimli1.1001.eaf70000.0’
‘/dev/shm/sm_segment.gimli1.1001.f5010000.0’
‘/dev/shm/sm_segment.gimli1.1001.fc3b0000.0’
‘/dev/shm/sm_segment.gimli1.1001.fefd0000.0’
‘~/.cache/pocl/uncached/tempfile_0K4HG5’
‘~/.cache/pocl/uncached/tempfile_1dxtRQ’
‘~/.cache/pocl/uncached/tempfile_4z01PT’
‘~/.cache/pocl/uncached/tempfile_6Y7Y8X’
‘~/.cache/pocl/uncached/tempfile_6Z0tul’
‘~/.cache/pocl/uncached/tempfile_8AGRz8’
‘~/.cache/pocl/uncached/tempfile_8jTv7B’
‘~/.cache/pocl/uncached/tempfile_Bm2USW’
‘~/.cache/pocl/uncached/tempfile_CzJAvf’
‘~/.cache/pocl/uncached/tempfile_DOg881’
‘~/.cache/pocl/uncached/tempfile_DtjIQg’
‘~/.cache/pocl/uncached/tempfile_Hw2oVw’
‘~/.cache/pocl/uncached/tempfile_IOaU8k’
‘~/.cache/pocl/uncached/tempfile_IZii7X’
‘~/.cache/pocl/uncached/tempfile_M7WY3Y’
‘~/.cache/pocl/uncached/tempfile_OsoLYa’
‘~/.cache/pocl/uncached/tempfile_QUgulZ’
‘~/.cache/pocl/uncached/tempfile_VNdMhz’
‘~/.cache/pocl/uncached/tempfile_VYzhbe’
‘~/.cache/pocl/uncached/tempfile_YZRLyH’
‘~/.cache/pocl/uncached/tempfile_bGZZTL’
‘~/.cache/pocl/uncached/tempfile_cusjCX’
‘~/.cache/pocl/uncached/tempfile_fjRk9u’
‘~/.cache/pocl/uncached/tempfile_iAJOV2’
‘~/.cache/pocl/uncached/tempfile_iUH4ab’
‘~/.cache/pocl/uncached/tempfile_ilGCbv’
‘~/.cache/pocl/uncached/tempfile_jx4Js9’
‘~/.cache/pocl/uncached/tempfile_kGKpxC’
‘~/.cache/pocl/uncached/tempfile_l1gNlI’
‘~/.cache/pocl/uncached/tempfile_lI1iSz’
‘~/.cache/pocl/uncached/tempfile_lIpYwx’
‘~/.cache/pocl/uncached/tempfile_nflEHp’
‘~/.cache/pocl/uncached/tempfile_on5eHU’
‘~/.cache/pocl/uncached/tempfile_ouPzDz’
‘~/.cache/pocl/uncached/tempfile_pfudYn’
‘~/.cache/pocl/uncached/tempfile_qGSJeq’
‘~/.cache/pocl/uncached/tempfile_qW1ctd’
‘~/.cache/pocl/uncached/tempfile_t2aLjs’
‘~/.cache/pocl/uncached/tempfile_t5BL1N’
‘~/.cache/pocl/uncached/tempfile_vDXNSI’
‘~/.cache/pocl/uncached/tempfile_wb3OZf’
‘~/.cache/pocl/uncached/tempfile_xIHZFq’
‘~/.cache/pocl/uncached/tempfile_xn8JqS’
‘~/.cache/pocl/uncached/tempfile_zBnyip’
‘~/.cache/pocl/uncached/tempfile_zJzzTQ’
‘~/.cache/pocl/uncached/tempfile_zmbiId’
- DONE
Status: 1 NOTE