Install log for 'pacotest'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘pacotest’ ...
** this is package ‘pacotest’ version ‘0.4.2’
** package ‘pacotest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-4) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’
make[1]: Entering directory '/tmp/Rtmp6NM050/R.INSTALL17e72951f94138/pacotest/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c EqualCop.cpp -o EqualCop.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c EqualCorr.cpp -o EqualCorr.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Grouping.cpp -o Grouping.o
Grouping.cpp: In function ‘void TreeGrouping(const arma::mat&, const arma::mat&, arma::umat&, arma::uvec&, int, int, double, arma::uvec&, arma::uvec&, arma::vec&)’:
Grouping.cpp:343:8: warning: ‘eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
  343 |   a.max(SplitVariable(0),SplitQuantile(0));
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:201,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ../inst/include/pacotest_header.h:32,
                 from Grouping.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:548:71: note: declared here
  548 |   [[deprecated("use .index_max() with ind2sub() instead")]] inline eT max(uword& row_of_max_val, uword& col_of_max_val) const;
      |                                                                       ^~~
Grouping.cpp:429:13: warning: ‘eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
  429 |       a1.max(SplitVariable(1),SplitQuantile(1));
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:692:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
 7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
      | ^~~~~~~
Grouping.cpp:496:13: warning: ‘eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
  496 |       a2.max(SplitVariable(2),SplitQuantile(2));
      |       ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
 7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
      | ^~~~~~~
Grouping.cpp:546:14: warning: ‘eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
  546 |         b.max(SplitVariable(3),SplitQuantile(3));
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
 7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
      | ^~~~~~~
Grouping.cpp:584:14: warning: ‘eT arma::Mat<eT>::max(arma::uword&, arma::uword&) const [with eT = double; arma::uword = unsigned int]’ is deprecated: use .index_max() with ind2sub() instead [-Wdeprecated-declarations]
  584 |         b.max(SplitVariable(3),SplitQuantile(3));
      |         ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7900:1: note: declared here
 7900 | Mat<eT>::max(uword& row_of_max_val, uword& col_of_max_val) const
      | ^~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c VecIndepTest.cpp -o VecIndepTest.o
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c pacotest-init.c -o pacotest-init.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pacotestFunctions.cpp -o pacotestFunctions.o
pacotestFunctions.cpp: In function ‘Rcpp::List CCC(arma::mat, arma::mat, double, double, double, double, double, arma::mat&, Rcpp::DataFrame, Rcpp::List, double, double, double, double)’:
pacotestFunctions.cpp:98:24: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   98 |     if (arma::is_finite(penaltyLevel) && arma::is_finite(penaltyPower) && arma::is_finite(Gamma0Partition))
      |         ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo:518,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from ../inst/include/pacotest_header.h:32,
                 from pacotestFunctions.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
pacotestFunctions.cpp:98:57: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   98 |     if (arma::is_finite(penaltyLevel) && arma::is_finite(penaltyPower) && arma::is_finite(Gamma0Partition))
      |                                          ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
pacotestFunctions.cpp:98:90: warning: ‘bool arma::is_finite(eT, const typename arma_scalar_only<T>::result*) [with eT = double; typename arma_scalar_only<T>::result = double]’ is deprecated: change arma::is_finite(val) to std::isfinite(val) [-Wdeprecated-declarations]
   98 |     if (arma::is_finite(penaltyLevel) && arma::is_finite(penaltyPower) && arma::is_finite(Gamma0Partition))
      |                                                                           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/current/armadillo_bits/fn_misc.hpp:167:1: note: declared here
  167 | is_finite(const eT x, const typename arma_scalar_only<eT>::result* junk = nullptr)
      | ^~~~~~~~~
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I../inst/include -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pacotest_R_HelpingFunctions.cpp -o pacotest_R_HelpingFunctions.o
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o pacotest.so EqualCop.o EqualCorr.o Grouping.o RcppExports.o VecIndepTest.o pacotest-init.o pacotestFunctions.o pacotest_R_HelpingFunctions.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp6NM050/R.INSTALL17e72951f94138/pacotest/src'
make[1]: Entering directory '/tmp/Rtmp6NM050/R.INSTALL17e72951f94138/pacotest/src'
make[1]: Leaving directory '/tmp/Rtmp6NM050/R.INSTALL17e72951f94138/pacotest/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-pacotest/00new/pacotest/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pacotest)