* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘optiSel’ ...
** package ‘optiSel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src'
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c RcppExports.cpp -o RcppExports.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_completeness.cpp -o rcpp_completeness.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_genecont.cpp -o rcpp_genecont.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_haplofreq.cpp -o rcpp_haplofreq.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_makeA.cpp -o rcpp_makeA.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_makeA_lowMem.cpp -o rcpp_makeA_lowMem.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_nativecont.cpp -o rcpp_nativecont.o
rcpp_nativecont.cpp: In function ‘Rcpp::NumericVector rcpp_nativecont(std::string, int, int, const ivec&, int, const vec&)’:
rcpp_nativecont.cpp:30:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   30 |   fgets(Line,2000000,fN);
      |   ~~~~~^~~~~~~~~~~~~~~~~
rcpp_nativecont.cpp:34:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   34 |     fgets(Line, 2*NFileN, fN);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_segBreedComp.cpp -o rcpp_segBreedComp.o
rcpp_segBreedComp.cpp: In function ‘Rcpp::NumericMatrix rcpp_segBreedComp(std::vector<std::__cxx11::basic_string<char> >, int, int, const ivec&, const ivec&, const vec&)’:
rcpp_segBreedComp.cpp:42:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   42 |     fgets(Line,2000000,fN);
      |     ~~~~~^~~~~~~~~~~~~~~~~
rcpp_segBreedComp.cpp:45:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   45 |       fgets(Line, 2*Nfile, fN);
      |       ~~~~~^~~~~~~~~~~~~~~~~~~
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_segIBD.cpp -o rcpp_segIBD.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_segIBDandN.cpp -o rcpp_segIBDandN.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_segIBDandNVersion2.cpp -o rcpp_segIBDandNVersion2.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_segInbreeding.cpp -o rcpp_segInbreeding.o
g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c rcpp_segN.cpp -o rcpp_segN.o
rcpp_segN.cpp: In function ‘Rcpp::NumericMatrix rcpp_segN(std::string, int, int, const ivec&, const vec&)’:
rcpp_segN.cpp:48:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result]
   48 |     fgets(Line, 2*NFileN, fN);
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~
g++-9 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o optiSel.so RcppExports.o rcpp_completeness.o rcpp_genecont.o rcpp_haplofreq.o rcpp_makeA.o rcpp_makeA_lowMem.o rcpp_nativecont.o rcpp_segBreedComp.o rcpp_segIBD.o rcpp_segIBDandN.o rcpp_segIBDandNVersion2.o rcpp_segInbreeding.o rcpp_segN.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRlapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-optiSel/00new/optiSel/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (optiSel)