* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘optiSel’ ... ** package ‘optiSel’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src' g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_completeness.cpp -o rcpp_completeness.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_genecont.cpp -o rcpp_genecont.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_haplofreq.cpp -o rcpp_haplofreq.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_makeA.cpp -o rcpp_makeA.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_makeA_lowMem.cpp -o rcpp_makeA_lowMem.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_nativecont.cpp -o rcpp_nativecont.o rcpp_nativecont.cpp: In function ‘Rcpp::NumericVector rcpp_nativecont(std::string, int, int, const ivec&, int, const vec&)’: rcpp_nativecont.cpp:30:8: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 30 | fgets(Line,2000000,fN); | ~~~~~^~~~~~~~~~~~~~~~~ rcpp_nativecont.cpp:34:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 34 | fgets(Line, 2*NFileN, fN); | ~~~~~^~~~~~~~~~~~~~~~~~~~ g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_segBreedComp.cpp -o rcpp_segBreedComp.o rcpp_segBreedComp.cpp: In function ‘Rcpp::NumericMatrix rcpp_segBreedComp(std::vector<std::__cxx11::basic_string<char> >, int, int, const ivec&, const ivec&, const vec&)’: rcpp_segBreedComp.cpp:42:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 42 | fgets(Line,2000000,fN); | ~~~~~^~~~~~~~~~~~~~~~~ rcpp_segBreedComp.cpp:45:12: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 45 | fgets(Line, 2*Nfile, fN); | ~~~~~^~~~~~~~~~~~~~~~~~~ g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_segIBD.cpp -o rcpp_segIBD.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_segIBDandN.cpp -o rcpp_segIBDandN.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_segIBDandNVersion2.cpp -o rcpp_segIBDandNVersion2.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_segInbreeding.cpp -o rcpp_segInbreeding.o g++-9 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=2 -fpic -g -O2 -Wall -pedantic -mtune=native -c rcpp_segN.cpp -o rcpp_segN.o rcpp_segN.cpp: In function ‘Rcpp::NumericMatrix rcpp_segN(std::string, int, int, const ivec&, const vec&)’: rcpp_segN.cpp:48:10: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] 48 | fgets(Line, 2*NFileN, fN); | ~~~~~^~~~~~~~~~~~~~~~~~~~ g++-9 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o optiSel.so RcppExports.o rcpp_completeness.o rcpp_genecont.o rcpp_haplofreq.o rcpp_makeA.o rcpp_makeA_lowMem.o rcpp_nativecont.o rcpp_segBreedComp.o rcpp_segIBD.o rcpp_segIBDandN.o rcpp_segIBDandNVersion2.o rcpp_segInbreeding.o rcpp_segN.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRlapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpFltPlW/R.INSTALL74536fea1a2d/optiSel/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-optiSel/00new/optiSel/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optiSel)