• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 16:37:52 UTC
• checking for file ‘omophub/DESCRIPTION’ ... OK
• this is package ‘omophub’ version ‘1.8.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘omophub’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/8s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/12s] OK   Running ‘testthat.R’ [9s/12s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp02fKf8’ ‘~/tmp/scratch/Rtmp0A99ML’   ‘~/tmp/scratch/Rtmp0EhzEJ’ ‘~/tmp/scratch/Rtmp0Orc6i’   ‘~/tmp/scratch/Rtmp16N8gr’ ‘~/tmp/scratch/Rtmp1XTZDT’   ‘~/tmp/scratch/Rtmp26SqEo’ ‘~/tmp/scratch/Rtmp2F5Ukd’   ‘~/tmp/scratch/Rtmp3GjSGG’ ‘~/tmp/scratch/Rtmp3xEm9G’   ‘~/tmp/scratch/Rtmp3zplYI’ ‘~/tmp/scratch/Rtmp46VCTX’   ‘~/tmp/scratch/Rtmp5UtIK2’ ‘~/tmp/scratch/Rtmp6wVXgS’   ‘~/tmp/scratch/Rtmp7a3ThB’ ‘~/tmp/scratch/Rtmp7txKpp’   ‘~/tmp/scratch/Rtmp7wPYDN’ ‘~/tmp/scratch/Rtmp8BAJcC’   ‘~/tmp/scratch/Rtmp8CgOT7’ ‘~/tmp/scratch/Rtmp8ikhSA’   ‘~/tmp/scratch/Rtmp8tqqEO’ ‘~/tmp/scratch/Rtmp9CqBSl’   ‘~/tmp/scratch/Rtmp9H1UZ3’ ‘~/tmp/scratch/Rtmp9jsJgD’   ‘~/tmp/scratch/RtmpA9fuQw’ ‘~/tmp/scratch/RtmpAT4ngA’   ‘~/tmp/scratch/RtmpAj1ewM’ ‘~/tmp/scratch/RtmpBmlhOF’   ‘~/tmp/scratch/RtmpCcJVCN’ ‘~/tmp/scratch/RtmpCuxhUl’   ‘~/tmp/scratch/RtmpDBfcJs’ ‘~/tmp/scratch/RtmpDImeNn’   ‘~/tmp/scratch/RtmpDMg9K9’ ‘~/tmp/scratch/RtmpDazEZN’   ‘~/tmp/scratch/RtmpDmGOhX’ ‘~/tmp/scratch/RtmpE3eoh7’   ‘~/tmp/scratch/RtmpEK06Oi’ ‘~/tmp/scratch/RtmpERJVPE’   ‘~/tmp/scratch/RtmpEUCRxb’ ‘~/tmp/scratch/RtmpEWKtOV’   ‘~/tmp/scratch/RtmpFccAL4’ ‘~/tmp/scratch/RtmpGqMgjh’   ‘~/tmp/scratch/RtmpH2v1jJ’ ‘~/tmp/scratch/RtmpHKXoG7’   ‘~/tmp/scratch/RtmpHO9qCH’ ‘~/tmp/scratch/RtmpI6nu89’   ‘~/tmp/scratch/RtmpIMMmyG’ ‘~/tmp/scratch/RtmpIisuiM’   ‘~/tmp/scratch/RtmpJXi9bw’ ‘~/tmp/scratch/RtmpJwx2Ru’   ‘~/tmp/scratch/RtmpMMXsnq’ ‘~/tmp/scratch/RtmpMZyLiB’   ‘~/tmp/scratch/RtmpMbA5mb’ ‘~/tmp/scratch/RtmpMs12Tb’   ‘~/tmp/scratch/RtmpMy0DjK’ ‘~/tmp/scratch/RtmpNbIeI7’   ‘~/tmp/scratch/RtmpNe8Vhp’ ‘~/tmp/scratch/RtmpOJebRy’   ‘~/tmp/scratch/RtmpOWqoQq’ ‘~/tmp/scratch/RtmpOdIN8C’   ‘~/tmp/scratch/RtmpQDnKmZ’ ‘~/tmp/scratch/RtmpTgXl8Q’   ‘~/tmp/scratch/RtmpTu7iE9’ ‘~/tmp/scratch/RtmpUQiLG5’   ‘~/tmp/scratch/RtmpUtQ5CX’ ‘~/tmp/scratch/RtmpVb4izA’   ‘~/tmp/scratch/RtmpX4pb9U’ ‘~/tmp/scratch/RtmpXmXyqe’   ‘~/tmp/scratch/RtmpYscTHg’ ‘~/tmp/scratch/RtmpZxyKYe’   ‘~/tmp/scratch/RtmpaLsXP3’ ‘~/tmp/scratch/RtmpaOdCUd’   ‘~/tmp/scratch/RtmpajtTZy’ ‘~/tmp/scratch/Rtmpb4PtH9’   ‘~/tmp/scratch/RtmpbVeN13’ ‘~/tmp/scratch/RtmpbwSMha’   ‘~/tmp/scratch/RtmpbznvMm’ ‘~/tmp/scratch/RtmpcRZ42E’   ‘~/tmp/scratch/RtmpcWzzp1’ ‘~/tmp/scratch/RtmpcpjnnQ’   ‘~/tmp/scratch/Rtmpd0lk57’ ‘~/tmp/scratch/RtmpdFUrdY’   ‘~/tmp/scratch/RtmpdjZmxv’ ‘~/tmp/scratch/RtmpePjQIv’   ‘~/tmp/scratch/RtmpeWjFDf’ ‘~/tmp/scratch/RtmpfBPW0b’   ‘~/tmp/scratch/RtmpfUMq4W’ ‘~/tmp/scratch/RtmpffjkMI’   ‘~/tmp/scratch/RtmpfvNNqa’ ‘~/tmp/scratch/RtmpgU5mOn’   ‘~/tmp/scratch/Rtmpgev9WM’ ‘~/tmp/scratch/RtmphM0iLk’   ‘~/tmp/scratch/RtmphObaI8’ ‘~/tmp/scratch/RtmphdyT6Y’   ‘~/tmp/scratch/RtmphlAjjR’ ‘~/tmp/scratch/RtmphwLdEP’   ‘~/tmp/scratch/Rtmpi9OjM0’ ‘~/tmp/scratch/RtmpiUcIF0’   ‘~/tmp/scratch/Rtmpic4iGr’ ‘~/tmp/scratch/RtmpisLL6F’   ‘~/tmp/scratch/Rtmpjvtjjv’ ‘~/tmp/scratch/RtmpkGWyJJ’   ‘~/tmp/scratch/RtmpkOtGER’ ‘~/tmp/scratch/RtmpkcFY0O’   ‘~/tmp/scratch/RtmpkmgmyG’ ‘~/tmp/scratch/RtmplVEPOI’   ‘~/tmp/scratch/RtmpmeOOVD’ ‘~/tmp/scratch/Rtmpmoxm5g’   ‘~/tmp/scratch/Rtmpmr3Rb2’ ‘~/tmp/scratch/Rtmpn5PhjK’   ‘~/tmp/scratch/RtmpnQe3UZ’ ‘~/tmp/scratch/RtmpnlJD6Z’   ‘~/tmp/scratch/Rtmpo3nbmI’ ‘~/tmp/scratch/RtmpoADcLm’   ‘~/tmp/scratch/RtmppnLpoe’ ‘~/tmp/scratch/RtmppnyGqa’   ‘~/tmp/scratch/Rtmppt9mcY’ ‘~/tmp/scratch/RtmppxBrEE’   ‘~/tmp/scratch/RtmpqOR9qY’ ‘~/tmp/scratch/RtmpqbKeOs’   ‘~/tmp/scratch/Rtmprjy8a8’ ‘~/tmp/scratch/RtmprnOrd8’   ‘~/tmp/scratch/RtmpsTiPw5’ ‘~/tmp/scratch/RtmpuGT5Tb’   ‘~/tmp/scratch/RtmpvMMKRD’ ‘~/tmp/scratch/Rtmpvpk0eV’   ‘~/tmp/scratch/RtmpxMtXWS’ ‘~/tmp/scratch/RtmpxgyHSU’   ‘~/tmp/scratch/RtmpxmJYBA’ ‘~/tmp/scratch/Rtmpxrr9zP’   ‘~/tmp/scratch/RtmpxsQdEY’ ‘~/tmp/scratch/RtmpyKfJH5’   ‘~/tmp/scratch/RtmpySSz8l’ ‘~/tmp/scratch/Rtmpz1IfbI’   ‘~/tmp/scratch/RtmpzTEvIU’ ‘~/tmp/scratch/xvfb-run.0YilUf’   ‘~/tmp/scratch/xvfb-run.28KPwP’ ‘~/tmp/scratch/xvfb-run.2UWgJX’   ‘~/tmp/scratch/xvfb-run.5Kw2B0’ ‘~/tmp/scratch/xvfb-run.6MVdyw’   ‘~/tmp/scratch/xvfb-run.9FGJjc’ ‘~/tmp/scratch/xvfb-run.9FtxXh’   ‘~/tmp/scratch/xvfb-run.9UliG7’ ‘~/tmp/scratch/xvfb-run.A6GaYe’   ‘~/tmp/scratch/xvfb-run.Ab3A4t’ ‘~/tmp/scratch/xvfb-run.BXh0Wn’   ‘~/tmp/scratch/xvfb-run.BgpOLS’ ‘~/tmp/scratch/xvfb-run.BmzEZa’   ‘~/tmp/scratch/xvfb-run.Cne1zj’ ‘~/tmp/scratch/xvfb-run.FClxTf’   ‘~/tmp/scratch/xvfb-run.FpqiOf’ ‘~/tmp/scratch/xvfb-run.FvUjUG’   ‘~/tmp/scratch/xvfb-run.GNbUe1’ ‘~/tmp/scratch/xvfb-run.GpezSq’   ‘~/tmp/scratch/xvfb-run.GzNmg4’ ‘~/tmp/scratch/xvfb-run.HIoXgL’   ‘~/tmp/scratch/xvfb-run.M8YmXS’ ‘~/tmp/scratch/xvfb-run.MrNCUB’   ‘~/tmp/scratch/xvfb-run.MuKX2N’ ‘~/tmp/scratch/xvfb-run.PjNmck’   ‘~/tmp/scratch/xvfb-run.Q1EFLX’ ‘~/tmp/scratch/xvfb-run.Q3ezIf’   ‘~/tmp/scratch/xvfb-run.Qo4mga’ ‘~/tmp/scratch/xvfb-run.TgAx2I’   ‘~/tmp/scratch/xvfb-run.UHhUhR’ ‘~/tmp/scratch/xvfb-run.UozOOP’   ‘~/tmp/scratch/xvfb-run.ZL2ibD’ ‘~/tmp/scratch/xvfb-run.ZxC0tR’   ‘~/tmp/scratch/xvfb-run.b0Zrep’ ‘~/tmp/scratch/xvfb-run.cWgkSb’   ‘~/tmp/scratch/xvfb-run.dhahGg’ ‘~/tmp/scratch/xvfb-run.fmVWvG’   ‘~/tmp/scratch/xvfb-run.gGRsKh’ ‘~/tmp/scratch/xvfb-run.hFO2D2’   ‘~/tmp/scratch/xvfb-run.i1X9fw’ ‘~/tmp/scratch/xvfb-run.iKoofW’   ‘~/tmp/scratch/xvfb-run.jlwWax’ ‘~/tmp/scratch/xvfb-run.jwX2yQ’   ‘~/tmp/scratch/xvfb-run.kLVW1M’ ‘~/tmp/scratch/xvfb-run.kOTWkB’   ‘~/tmp/scratch/xvfb-run.ka0vEo’ ‘~/tmp/scratch/xvfb-run.mvoIwN’   ‘~/tmp/scratch/xvfb-run.n0Ln5J’ ‘~/tmp/scratch/xvfb-run.q4VlkA’   ‘~/tmp/scratch/xvfb-run.rV6YgG’ ‘~/tmp/scratch/xvfb-run.t9RlP6’   ‘~/tmp/scratch/xvfb-run.uLCCiA’ ‘~/tmp/scratch/xvfb-run.vSvBoW’   ‘~/tmp/scratch/xvfb-run.wC2rh5’ ‘~/tmp/scratch/xvfb-run.wQ7pXj’   ‘~/tmp/scratch/xvfb-run.zKAxll’ ‘~/tmp/scratch/xvfb-run.zg3VIj’   ‘/dev/shm/sm_segment.gimli1.1001.59510000.0’   ‘/dev/shm/sm_segment.gimli1.1001.7f000000.0’   ‘/dev/shm/sm_segment.gimli1.1001.883b0000.0’   ‘/dev/shm/sm_segment.gimli1.1001.a170000.0’   ‘/dev/shm/sm_segment.gimli1.1001.cc4c0000.0’   ‘~/.cache/pocl/uncached/tempfile_1xMkXc’   ‘~/.cache/pocl/uncached/tempfile_Erbkod’   ‘~/.cache/pocl/uncached/tempfile_Yp5YCO’   ‘~/.cache/pocl/uncached/tempfile_a7hbnU’   ‘~/.cache/pocl/uncached/tempfile_iLh5Jo’
• DONE

Status: 1 NOTE