Check results for 'numberofalleles'

using R Under development (unstable) (2026-07-30 r90327)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-16 (Debian 16.1.0-3) 16.1.0 GNU Fortran (Debian 16.1.0-3) 16.1.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8 * current time: 2026-07-31 16:35:49 UTC
checking for file ‘numberofalleles/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘numberofalleles’ version ‘1.0.1’
package encoding: UTF-8
checking CRAN incoming feasibility ... [1s/1s] NOTE Maintainer: ‘Maarten Kruijver <maarten.kruijver@esr.cri.nz>’ Package CITATION file contains call(s) to old-style citEntry(). Please use bibentry() instead.
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking serialization versions ... OK
checking whether package ‘numberofalleles’ can be installed ... OK See the install log for details.
used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
checking package directory ... OK
checking for future file timestamps ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/1s] OK
checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
checking whether the package can be unloaded cleanly ... [0s/0s] OK
checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
checking loading without being on the library search path ... [0s/1s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [4s/5s] OK
checking Rd files ... [0s/0s] OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking pragmas in C/C++ headers and code ... OK
checking compilation flags used ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [2s/3s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [3s/3s] OK Running ‘testthat.R’ [2s/3s]
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [3s/4s] OK
checking PDF version of manual ... [4s/5s] OK
checking HTML version of manual ... [1s/1s] OK
checking for non-standard things in the check directory ... OK
checking for new files in some other directories ... NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0OeeaJ’ ‘~/tmp/scratch/Rtmp0R47Na’ ‘~/tmp/scratch/Rtmp0iRPFP’ ‘~/tmp/scratch/Rtmp0iSayF’ ‘~/tmp/scratch/Rtmp0pMM6A’ ‘~/tmp/scratch/Rtmp0qhQO8’ ‘~/tmp/scratch/Rtmp1CzZmz’ ‘~/tmp/scratch/Rtmp1eOHyk’ ‘~/tmp/scratch/Rtmp3lasK9’ ‘~/tmp/scratch/Rtmp41YeIu’ ‘~/tmp/scratch/Rtmp4Lv2Oi’ ‘~/tmp/scratch/Rtmp4QvOur’ ‘~/tmp/scratch/Rtmp5LZ0Ky’ ‘~/tmp/scratch/Rtmp6EXfig’ ‘~/tmp/scratch/Rtmp6sxwnO’ ‘~/tmp/scratch/Rtmp79DkzE’ ‘~/tmp/scratch/Rtmp7sYgC1’ ‘~/tmp/scratch/Rtmp837ylc’ ‘~/tmp/scratch/Rtmp8B92bu’ ‘~/tmp/scratch/Rtmp8JWqtk’ ‘~/tmp/scratch/Rtmp8WvRt7’ ‘~/tmp/scratch/Rtmp950OCD’ ‘~/tmp/scratch/Rtmp98Udec’ ‘~/tmp/scratch/Rtmp9jlmFl’ ‘~/tmp/scratch/RtmpA4UcnQ’ ‘~/tmp/scratch/RtmpBMAFW9’ ‘~/tmp/scratch/RtmpBNJLec’ ‘~/tmp/scratch/RtmpBVielC’ ‘~/tmp/scratch/RtmpC7JPfN’ ‘~/tmp/scratch/RtmpCQZhQN’ ‘~/tmp/scratch/RtmpDarsJT’ ‘~/tmp/scratch/RtmpDkMkjn’ ‘~/tmp/scratch/RtmpDlNoGQ’ ‘~/tmp/scratch/RtmpER76Py’ ‘~/tmp/scratch/RtmpFscgpe’ ‘~/tmp/scratch/RtmpFzVdXI’ ‘~/tmp/scratch/RtmpGYWW80’ ‘~/tmp/scratch/RtmpGtwnpg’ ‘~/tmp/scratch/RtmpHP24Io’ ‘~/tmp/scratch/RtmpHnU4wY’ ‘~/tmp/scratch/RtmpI0RqSz’ ‘~/tmp/scratch/RtmpJPbE6F’ ‘~/tmp/scratch/RtmpJYbo3L’ ‘~/tmp/scratch/RtmpJtPpRP’ ‘~/tmp/scratch/RtmpKOqjCs’ ‘~/tmp/scratch/RtmpLCV5Io’ ‘~/tmp/scratch/RtmpLIXBWn’ ‘~/tmp/scratch/RtmpLZJebH’ ‘~/tmp/scratch/RtmpLbVt6l’ ‘~/tmp/scratch/RtmpMssXvG’ ‘~/tmp/scratch/RtmpOSh0Jy’ ‘~/tmp/scratch/RtmpOVT4Xy’ ‘~/tmp/scratch/RtmpPgEnKH’ ‘~/tmp/scratch/RtmpQicR3a’ ‘~/tmp/scratch/RtmpROpwQL’ ‘~/tmp/scratch/RtmpSUg9Za’ ‘~/tmp/scratch/RtmpSwIyQU’ ‘~/tmp/scratch/RtmpT7CiOL’ ‘~/tmp/scratch/RtmpTis2Cp’ ‘~/tmp/scratch/RtmpU51yxx’ ‘~/tmp/scratch/RtmpUjgVgJ’ ‘~/tmp/scratch/RtmpVQ3jnt’ ‘~/tmp/scratch/RtmpVzp1CN’ ‘~/tmp/scratch/RtmpWJguX0’ ‘~/tmp/scratch/RtmpWnGBux’ ‘~/tmp/scratch/RtmpYFc2YN’ ‘~/tmp/scratch/RtmpZJna4T’ ‘~/tmp/scratch/RtmpZUngC0’ ‘~/tmp/scratch/Rtmpa345vK’ ‘~/tmp/scratch/RtmpbJyAUs’ ‘~/tmp/scratch/RtmpcLBPsA’ ‘~/tmp/scratch/RtmpdfP1gl’ ‘~/tmp/scratch/RtmpdnpLas’ ‘~/tmp/scratch/Rtmpea4R7i’ ‘~/tmp/scratch/RtmpelIVAx’ ‘~/tmp/scratch/RtmpgNuboo’ ‘~/tmp/scratch/Rtmpgj0LXO’ ‘~/tmp/scratch/RtmpgofQuV’ ‘~/tmp/scratch/RtmphgH4gF’ ‘~/tmp/scratch/Rtmpi8lKSG’ ‘~/tmp/scratch/RtmpiZxq5F’ ‘~/tmp/scratch/RtmpiivIa5’ ‘~/tmp/scratch/RtmpjrPDav’ ‘~/tmp/scratch/RtmpkK7njR’ ‘~/tmp/scratch/Rtmpkl9t85’ ‘~/tmp/scratch/RtmpkrgBtC’ ‘~/tmp/scratch/RtmplF6fP8’ ‘~/tmp/scratch/Rtmpla10Aw’ ‘~/tmp/scratch/RtmplfnpnP’ ‘~/tmp/scratch/RtmpnBqfgW’ ‘~/tmp/scratch/RtmpnGqtwG’ ‘~/tmp/scratch/RtmpnTz3Iq’ ‘~/tmp/scratch/Rtmpp1oB9t’ ‘~/tmp/scratch/RtmppPfe7I’ ‘~/tmp/scratch/RtmppeT7JM’ ‘~/tmp/scratch/Rtmppn3WKw’ ‘~/tmp/scratch/Rtmpq98YnT’ ‘~/tmp/scratch/RtmpqVSsf8’ ‘~/tmp/scratch/RtmpqaYfKG’ ‘~/tmp/scratch/RtmprBavaz’ ‘~/tmp/scratch/RtmprDUF8o’ ‘~/tmp/scratch/RtmprtnYC1’ ‘~/tmp/scratch/RtmptiLQdg’ ‘~/tmp/scratch/RtmptupwBL’ ‘~/tmp/scratch/Rtmpu5dM2M’ ‘~/tmp/scratch/RtmpuBsca3’ ‘~/tmp/scratch/RtmpuPLfx9’ ‘~/tmp/scratch/Rtmpv87de1’ ‘~/tmp/scratch/RtmpwD6vZ8’ ‘~/tmp/scratch/RtmpwEWJw7’ ‘~/tmp/scratch/RtmpxE7FKQ’ ‘~/tmp/scratch/Rtmpy0vvD2’ ‘~/tmp/scratch/Rtmpy2dQ6U’ ‘~/tmp/scratch/Rtmpyp41Vu’ ‘~/tmp/scratch/RtmpyuIDHS’ ‘~/tmp/scratch/RtmpzK1BKD’ ‘~/tmp/scratch/quarto-session83dc7a05b2493772’ ‘~/tmp/scratch/xvfb-run.18L3ws’ ‘~/tmp/scratch/xvfb-run.23Efwf’ ‘~/tmp/scratch/xvfb-run.48y2hV’ ‘~/tmp/scratch/xvfb-run.5Py1GB’ ‘~/tmp/scratch/xvfb-run.6jrPcs’ ‘~/tmp/scratch/xvfb-run.7I0eCR’ ‘~/tmp/scratch/xvfb-run.7k38ld’ ‘~/tmp/scratch/xvfb-run.8Dri83’ ‘~/tmp/scratch/xvfb-run.ALmwWP’ ‘~/tmp/scratch/xvfb-run.Bd7Gnw’ ‘~/tmp/scratch/xvfb-run.Bl11DF’ ‘~/tmp/scratch/xvfb-run.CGRvE7’ ‘~/tmp/scratch/xvfb-run.DgBe4B’ ‘~/tmp/scratch/xvfb-run.KldZEc’ ‘~/tmp/scratch/xvfb-run.Pv1Qiq’ ‘~/tmp/scratch/xvfb-run.SDndSh’ ‘~/tmp/scratch/xvfb-run.ShP8Qg’ ‘~/tmp/scratch/xvfb-run.TCsuzg’ ‘~/tmp/scratch/xvfb-run.UGNEz5’ ‘~/tmp/scratch/xvfb-run.UgfHY4’ ‘~/tmp/scratch/xvfb-run.Vml8t8’ ‘~/tmp/scratch/xvfb-run.YQNH6X’ ‘~/tmp/scratch/xvfb-run.ZuAr3q’ ‘~/tmp/scratch/xvfb-run.bLVJ3s’ ‘~/tmp/scratch/xvfb-run.bfBGik’ ‘~/tmp/scratch/xvfb-run.bjAQmD’ ‘~/tmp/scratch/xvfb-run.bsGMue’ ‘~/tmp/scratch/xvfb-run.btUi11’ ‘~/tmp/scratch/xvfb-run.c3k6cJ’ ‘~/tmp/scratch/xvfb-run.cxlhFf’ ‘~/tmp/scratch/xvfb-run.fqP9LA’ ‘~/tmp/scratch/xvfb-run.g4nDyA’ ‘~/tmp/scratch/xvfb-run.iyHziZ’ ‘~/tmp/scratch/xvfb-run.mSCNns’ ‘~/tmp/scratch/xvfb-run.njX3vj’ ‘~/tmp/scratch/xvfb-run.odeuE6’ ‘~/tmp/scratch/xvfb-run.owaAW4’ ‘~/tmp/scratch/xvfb-run.pJAPYD’ ‘~/tmp/scratch/xvfb-run.wHGq0S’ ‘~/tmp/scratch/xvfb-run.xCyQnh’ ‘~/tmp/scratch/xvfb-run.xvWUvs’ ‘~/tmp/scratch/xvfb-run.yNXWy3’ ‘~/tmp/scratch/xvfb-run.ynfBgb’ ‘/dev/shm/sm_segment.gimli1.1001.48be0000.0’ ‘~/.cache/pocl/uncached/tempfile_5NKzn6’
DONE

Status: 2 NOTEs