• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 16:41:42 UTC
• checking for file ‘nfcore.utils/DESCRIPTION’ ... OK
• this is package ‘nfcore.utils’ version ‘0.0.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘nfcore.utils’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [0s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/2s] OK   Running ‘testthat.R’ [1s/2s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp06mT30’ ‘~/tmp/scratch/Rtmp1GWt6f’   ‘~/tmp/scratch/Rtmp1Oeaia’ ‘~/tmp/scratch/Rtmp2FRQw2’   ‘~/tmp/scratch/Rtmp2flvhJ’ ‘~/tmp/scratch/Rtmp36pcKq’   ‘~/tmp/scratch/Rtmp5oFSWk’ ‘~/tmp/scratch/Rtmp8ZaqYK’   ‘~/tmp/scratch/Rtmp9WrLXg’ ‘~/tmp/scratch/Rtmp9YAvgP’   ‘~/tmp/scratch/RtmpA6LDXT’ ‘~/tmp/scratch/RtmpB0xVxn’   ‘~/tmp/scratch/RtmpBC2yXo’ ‘~/tmp/scratch/RtmpBQnkzB’   ‘~/tmp/scratch/RtmpE3owZA’ ‘~/tmp/scratch/RtmpEg45ZE’   ‘~/tmp/scratch/RtmpF9dvSQ’ ‘~/tmp/scratch/RtmpFfQfX9’   ‘~/tmp/scratch/RtmpFgwZj7’ ‘~/tmp/scratch/RtmpFlYB2K’   ‘~/tmp/scratch/RtmpGYhZtc’ ‘~/tmp/scratch/RtmpHQlIHf’   ‘~/tmp/scratch/RtmpHRhe2b’ ‘~/tmp/scratch/RtmpHgLUCJ’   ‘~/tmp/scratch/RtmpI54FsJ’ ‘~/tmp/scratch/RtmpI9zzZN’   ‘~/tmp/scratch/RtmpJaPU7D’ ‘~/tmp/scratch/RtmpJw7XMK’   ‘~/tmp/scratch/RtmpLBRAOg’ ‘~/tmp/scratch/RtmpLYtdNC’   ‘~/tmp/scratch/RtmpMa12xI’ ‘~/tmp/scratch/RtmpNUdWel’   ‘~/tmp/scratch/RtmpO2zP5u’ ‘~/tmp/scratch/RtmpOAc6VO’   ‘~/tmp/scratch/RtmpOO81um’ ‘~/tmp/scratch/RtmpOSMLEx’   ‘~/tmp/scratch/RtmpOxGwdy’ ‘~/tmp/scratch/RtmpOzDdtU’   ‘~/tmp/scratch/RtmpP4aLZ7’ ‘~/tmp/scratch/RtmpP7FpTl’   ‘~/tmp/scratch/RtmpPAB0eW’ ‘~/tmp/scratch/RtmpPLVC86’   ‘~/tmp/scratch/RtmpPhucze’ ‘~/tmp/scratch/RtmpQCbUGq’   ‘~/tmp/scratch/RtmpQp5nPr’ ‘~/tmp/scratch/RtmpQujTxs’   ‘~/tmp/scratch/RtmpRt553l’ ‘~/tmp/scratch/RtmpT6bSFq’   ‘~/tmp/scratch/RtmpUXm3Cs’ ‘~/tmp/scratch/RtmpUnyzvo’   ‘~/tmp/scratch/RtmpVJ0JIc’ ‘~/tmp/scratch/RtmpVqWS0c’   ‘~/tmp/scratch/RtmpW5eyNx’ ‘~/tmp/scratch/RtmpWfXOxu’   ‘~/tmp/scratch/RtmpWozVbW’ ‘~/tmp/scratch/RtmpXSWGGU’   ‘~/tmp/scratch/RtmpXU37mJ’ ‘~/tmp/scratch/RtmpXwGZHU’   ‘~/tmp/scratch/RtmpZQbVcw’ ‘~/tmp/scratch/RtmpbvgLhs’   ‘~/tmp/scratch/Rtmpc8qEU7’ ‘~/tmp/scratch/Rtmpcf2uyW’   ‘~/tmp/scratch/RtmpciX3xU’ ‘~/tmp/scratch/RtmpcmsUA3’   ‘~/tmp/scratch/Rtmpdjs8Oi’ ‘~/tmp/scratch/RtmpeT1PQb’   ‘~/tmp/scratch/RtmpennikM’ ‘~/tmp/scratch/RtmpgFATph’   ‘~/tmp/scratch/RtmphEKHAP’ ‘~/tmp/scratch/RtmphIQYeS’   ‘~/tmp/scratch/RtmphLKayt’ ‘~/tmp/scratch/RtmphTKzXM’   ‘~/tmp/scratch/Rtmpjqh7Cn’ ‘~/tmp/scratch/RtmpkhJEwy’   ‘~/tmp/scratch/Rtmpkp0RSq’ ‘~/tmp/scratch/Rtmpkq4OBV’   ‘~/tmp/scratch/Rtmpky0oRS’ ‘~/tmp/scratch/Rtmpl8xwYB’   ‘~/tmp/scratch/RtmpleDX3a’ ‘~/tmp/scratch/RtmplrsIO1’   ‘~/tmp/scratch/Rtmpn0fnl5’ ‘~/tmp/scratch/Rtmpo7IL9X’   ‘~/tmp/scratch/RtmpohG42p’ ‘~/tmp/scratch/RtmpomuaXA’   ‘~/tmp/scratch/RtmpovpFFb’ ‘~/tmp/scratch/RtmppVQaYt’   ‘~/tmp/scratch/RtmppYfWfi’ ‘~/tmp/scratch/RtmppgzYrB’   ‘~/tmp/scratch/Rtmppng0re’ ‘~/tmp/scratch/Rtmpq9WVPR’   ‘~/tmp/scratch/RtmpqfRpc4’ ‘~/tmp/scratch/Rtmpr67sUK’   ‘~/tmp/scratch/RtmpsEZpjw’ ‘~/tmp/scratch/RtmpsLpr5k’   ‘~/tmp/scratch/RtmpsPNZSz’ ‘~/tmp/scratch/Rtmpsg35ea’   ‘~/tmp/scratch/RtmptpgAke’ ‘~/tmp/scratch/Rtmpw5hJde’   ‘~/tmp/scratch/RtmpxD3IUC’ ‘~/tmp/scratch/RtmpxLlcb1’   ‘~/tmp/scratch/RtmpxUEZw1’ ‘~/tmp/scratch/RtmpxsIxBc’   ‘~/tmp/scratch/Rtmpy1T6Cc’ ‘~/tmp/scratch/Rtmpy68lu2’   ‘~/tmp/scratch/RtmpyLJM3X’ ‘~/tmp/scratch/RtmpyPqJs2’   ‘~/tmp/scratch/RtmpznuHbB’ ‘~/tmp/scratch/RtmpzpG5jP’   ‘~/tmp/scratch/xvfb-run.1gjp4I’ ‘~/tmp/scratch/xvfb-run.7m0fc9’   ‘~/tmp/scratch/xvfb-run.B6cCNO’ ‘~/tmp/scratch/xvfb-run.EvWzLv’   ‘~/tmp/scratch/xvfb-run.GnUdWk’ ‘~/tmp/scratch/xvfb-run.I9m3oA’   ‘~/tmp/scratch/xvfb-run.Joi2Eg’ ‘~/tmp/scratch/xvfb-run.LdhuoA’   ‘~/tmp/scratch/xvfb-run.MfvRs1’ ‘~/tmp/scratch/xvfb-run.Q00A2R’   ‘~/tmp/scratch/xvfb-run.Xn4p3k’ ‘~/tmp/scratch/xvfb-run.YwNiYe’   ‘~/tmp/scratch/xvfb-run.ZyzJZz’ ‘~/tmp/scratch/xvfb-run.bJd6i0’   ‘~/tmp/scratch/xvfb-run.dJTCBB’ ‘~/tmp/scratch/xvfb-run.dzw2Y2’   ‘~/tmp/scratch/xvfb-run.elno84’ ‘~/tmp/scratch/xvfb-run.insQLO’   ‘~/tmp/scratch/xvfb-run.oBmCZi’ ‘~/tmp/scratch/xvfb-run.ooBZiz’   ‘~/tmp/scratch/xvfb-run.oz4Fla’ ‘~/tmp/scratch/xvfb-run.pcWZiZ’   ‘~/tmp/scratch/xvfb-run.r0P5PE’ ‘~/tmp/scratch/xvfb-run.rj92Wm’   ‘~/tmp/scratch/xvfb-run.sYvsVt’ ‘~/tmp/scratch/xvfb-run.vbNSnE’   ‘~/tmp/scratch/xvfb-run.z555IQ’
• DONE

Status: 1 NOTE