Check results for 'neuroim2'

using R Under development (unstable) (2026-07-31 r90332)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-16 (Debian 16.1.0-3) 16.1.0 GNU Fortran (Debian 16.1.0-3) 16.1.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8 * current time: 2026-08-01 16:29:42 UTC
checking for file ‘neuroim2/DESCRIPTION’ ... OK
checking extension type ... Package
this is package ‘neuroim2’ version ‘0.13.0’
package encoding: UTF-8
checking CRAN incoming feasibility ... [2s/3s] OK
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘neuroim2’ can be installed ... OK See the install log for details.
used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
checking C++ specification ... INFO specified C++17
checking package directory ... OK
checking for future file timestamps ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [3s/4s] OK
checking whether the package can be loaded with stated dependencies ... [4s/6s] OK
checking whether the package can be unloaded cleanly ... [4s/6s] OK
checking whether the namespace can be loaded with stated dependencies ... [4s/5s] OK
checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
checking loading without being on the library search path ... [3s/4s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [36s/44s] OK
checking Rd files ... [1s/2s] OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... NOTE Rd files without \usage: ‘as-ClusteredNeuroVol-DenseNeuroVol.Rd’ ‘as.raster.Rd’ ‘image.Rd’ \arguments should not be documented without \usage.
checking for unstated dependencies in examples ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
checking pragmas in C/C++ headers and code ... OK
checking compilation flags used ... OK
checking compiled code ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [10s/13s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [137s/172s] OK Running ‘spelling.R’ [0s/1s] Running ‘testthat.R’ [137s/171s]
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
checking re-building of vignette outputs ... [110s/142s] OK
checking PDF version of manual ... [12s/15s] OK
checking HTML version of manual ... [5s/7s] OK
checking for non-standard things in the check directory ... OK
checking for new files in some other directories ... NOTE Found the following files/directories: ‘~/tmp/scratch/Rtmp0tktqU’ ‘~/tmp/scratch/Rtmp16j775’ ‘~/tmp/scratch/Rtmp1H82hl’ ‘~/tmp/scratch/Rtmp1IxrTH’ ‘~/tmp/scratch/Rtmp1U41e3’ ‘~/tmp/scratch/Rtmp1xNQHx’ ‘~/tmp/scratch/Rtmp2kr2K6’ ‘~/tmp/scratch/Rtmp31XC24’ ‘~/tmp/scratch/Rtmp3HQI1H’ ‘~/tmp/scratch/Rtmp3IOHFU’ ‘~/tmp/scratch/Rtmp3cROKE’ ‘~/tmp/scratch/Rtmp4Lw8iy’ ‘~/tmp/scratch/Rtmp4sMImn’ ‘~/tmp/scratch/Rtmp5XBZzu’ ‘~/tmp/scratch/Rtmp6B0NBQ’ ‘~/tmp/scratch/Rtmp6GjJPV’ ‘~/tmp/scratch/Rtmp6McZec’ ‘~/tmp/scratch/Rtmp6nBPXT’ ‘~/tmp/scratch/Rtmp6sqvq5’ ‘~/tmp/scratch/Rtmp7H3mC0’ ‘~/tmp/scratch/Rtmp7ezZDz’ ‘~/tmp/scratch/Rtmp8kYmD0’ ‘~/tmp/scratch/Rtmp9ZMNwO’ ‘~/tmp/scratch/RtmpA7eWxI’ ‘~/tmp/scratch/RtmpAOmCvX’ ‘~/tmp/scratch/RtmpAOtN8k’ ‘~/tmp/scratch/RtmpAZ8LZ7’ ‘~/tmp/scratch/RtmpBpPBl9’ ‘~/tmp/scratch/RtmpD0aaaq’ ‘~/tmp/scratch/RtmpDkXvv5’ ‘~/tmp/scratch/RtmpE8EN0Y’ ‘~/tmp/scratch/RtmpEoA5ip’ ‘~/tmp/scratch/RtmpFVjmoa’ ‘~/tmp/scratch/RtmpG12w16’ ‘~/tmp/scratch/RtmpGBZ70s’ ‘~/tmp/scratch/RtmpGOhLhw’ ‘~/tmp/scratch/RtmpHGwJLS’ ‘~/tmp/scratch/RtmpHN9A9o’ ‘~/tmp/scratch/RtmpHNMJJt’ ‘~/tmp/scratch/RtmpHkxd5r’ ‘~/tmp/scratch/RtmpI3aDWd’ ‘~/tmp/scratch/RtmpIatGhq’ ‘~/tmp/scratch/RtmpIm5ykp’ ‘~/tmp/scratch/RtmpIxsmvE’ ‘~/tmp/scratch/RtmpJKy7S8’ ‘~/tmp/scratch/RtmpJPx02R’ ‘~/tmp/scratch/RtmpJZe3xS’ ‘~/tmp/scratch/RtmpKBcfDc’ ‘~/tmp/scratch/RtmpKIwPOR’ ‘~/tmp/scratch/RtmpM188zo’ ‘~/tmp/scratch/RtmpM4JXqk’ ‘~/tmp/scratch/RtmpMuBjRu’ ‘~/tmp/scratch/RtmpMxNpJI’ ‘~/tmp/scratch/RtmpN1XXGG’ ‘~/tmp/scratch/RtmpNAVv7l’ ‘~/tmp/scratch/RtmpNBMClr’ ‘~/tmp/scratch/RtmpNNP8rj’ ‘~/tmp/scratch/RtmpNSL57s’ ‘~/tmp/scratch/RtmpNiKwPz’ ‘~/tmp/scratch/RtmpNnsxy7’ ‘~/tmp/scratch/RtmpO75fi0’ ‘~/tmp/scratch/RtmpOLmCKl’ ‘~/tmp/scratch/RtmpOR8UYM’ ‘~/tmp/scratch/RtmpOVohUG’ ‘~/tmp/scratch/RtmpOWgI86’ ‘~/tmp/scratch/RtmpOoY35l’ ‘~/tmp/scratch/RtmpPGlvLd’ ‘~/tmp/scratch/RtmpPIXp3e’ ‘~/tmp/scratch/RtmpPJWffF’ ‘~/tmp/scratch/RtmpPT8Aal’ ‘~/tmp/scratch/RtmpPhiBdi’ ‘~/tmp/scratch/RtmpQmzBt8’ ‘~/tmp/scratch/RtmpR1DsE1’ ‘~/tmp/scratch/RtmpRE5To9’ ‘~/tmp/scratch/RtmpSBEscn’ ‘~/tmp/scratch/RtmpSZe9f7’ ‘~/tmp/scratch/RtmpSi3Ekk’ ‘~/tmp/scratch/RtmpTI8p0z’ ‘~/tmp/scratch/RtmpTNGOYG’ ‘~/tmp/scratch/RtmpTcGNig’ ‘~/tmp/scratch/RtmpTfpyNh’ ‘~/tmp/scratch/RtmpUVPtJv’ ‘~/tmp/scratch/RtmpV1Ii3R’ ‘~/tmp/scratch/RtmpV7h5NF’ ‘~/tmp/scratch/RtmpVRMtq7’ ‘~/tmp/scratch/RtmpW7r0xP’ ‘~/tmp/scratch/RtmpWDt2oK’ ‘~/tmp/scratch/RtmpWb5m68’ ‘~/tmp/scratch/RtmpXE6nD7’ ‘~/tmp/scratch/RtmpXXesxM’ ‘~/tmp/scratch/RtmpY4bm7P’ ‘~/tmp/scratch/RtmpZ05bvT’ ‘~/tmp/scratch/RtmpZ08Wbu’ ‘~/tmp/scratch/RtmpZDWPyX’ ‘~/tmp/scratch/RtmpZWtjo4’ ‘~/tmp/scratch/RtmpZkCBlO’ ‘~/tmp/scratch/RtmpZsGCfS’ ‘~/tmp/scratch/RtmpZvSgnR’ ‘~/tmp/scratch/RtmpZylTOG’ ‘~/tmp/scratch/RtmpaPGIes’ ‘~/tmp/scratch/Rtmpav2IP3’ ‘~/tmp/scratch/RtmpbgaUtV’ ‘~/tmp/scratch/RtmpccLwSg’ ‘~/tmp/scratch/RtmpcklUR6’ ‘~/tmp/scratch/RtmpdEuylr’ ‘~/tmp/scratch/RtmpdMZup8’ ‘~/tmp/scratch/RtmpeR8DLC’ ‘~/tmp/scratch/Rtmpf7PTLJ’ ‘~/tmp/scratch/Rtmpfb88Nb’ ‘~/tmp/scratch/Rtmpg6QHgU’ ‘~/tmp/scratch/RtmpgM5R99’ ‘~/tmp/scratch/RtmpgZvoNX’ ‘~/tmp/scratch/Rtmpgeu66b’ ‘~/tmp/scratch/Rtmph0x2ny’ ‘~/tmp/scratch/Rtmph1ad1e’ ‘~/tmp/scratch/Rtmph2rSl9’ ‘~/tmp/scratch/RtmphITYLL’ ‘~/tmp/scratch/RtmphXwVEe’ ‘~/tmp/scratch/Rtmpi8nb6X’ ‘~/tmp/scratch/RtmpiIgaiv’ ‘~/tmp/scratch/RtmpiQ3vFf’ ‘~/tmp/scratch/RtmpixDi4n’ ‘~/tmp/scratch/Rtmpj2i3Yd’ ‘~/tmp/scratch/Rtmpj72136’ ‘~/tmp/scratch/RtmpjAJ9ct’ ‘~/tmp/scratch/RtmpkbUXap’ ‘~/tmp/scratch/RtmplM0RMg’ ‘~/tmp/scratch/RtmplpDS3Y’ ‘~/tmp/scratch/RtmplqSibE’ ‘~/tmp/scratch/Rtmpn4bC4c’ ‘~/tmp/scratch/RtmpnSpBC4’ ‘~/tmp/scratch/Rtmpno9Bo4’ ‘~/tmp/scratch/RtmpotqFy8’ ‘~/tmp/scratch/RtmppKiC9X’ ‘~/tmp/scratch/RtmppRLM3E’ ‘~/tmp/scratch/RtmppjsXO4’ ‘~/tmp/scratch/Rtmpq3NWzk’ ‘~/tmp/scratch/RtmpqL92ZJ’ ‘~/tmp/scratch/RtmpqmtgUM’ ‘~/tmp/scratch/RtmpqtlaZ2’ ‘~/tmp/scratch/RtmprAmd7r’ ‘~/tmp/scratch/RtmprI3oyz’ ‘~/tmp/scratch/Rtmprr2KhI’ ‘~/tmp/scratch/RtmpsgImth’ ‘~/tmp/scratch/RtmpsxiLqm’ ‘~/tmp/scratch/Rtmpt60uih’ ‘~/tmp/scratch/RtmptwVELf’ ‘~/tmp/scratch/RtmpuCknfB’ ‘~/tmp/scratch/RtmpuQhg9Q’ ‘~/tmp/scratch/RtmpuU6DUs’ ‘~/tmp/scratch/RtmpvjkQDQ’ ‘~/tmp/scratch/Rtmpvn8uM9’ ‘~/tmp/scratch/RtmpwkFoKf’ ‘~/tmp/scratch/RtmpwpjjZV’ ‘~/tmp/scratch/RtmpxKPVjl’ ‘~/tmp/scratch/RtmpxUwkig’ ‘~/tmp/scratch/RtmpxphBTQ’ ‘~/tmp/scratch/RtmpyEoyL5’ ‘~/tmp/scratch/RtmpzNTwGt’ ‘~/tmp/scratch/RtmpzW5s3R’ ‘~/tmp/scratch/RtmpzcXyrx’ ‘~/tmp/scratch/xvfb-run.1vPpda’ ‘~/tmp/scratch/xvfb-run.2DMkZm’ ‘~/tmp/scratch/xvfb-run.2ijDsU’ ‘~/tmp/scratch/xvfb-run.39Pybw’ ‘~/tmp/scratch/xvfb-run.3FqzeE’ ‘~/tmp/scratch/xvfb-run.5U02Aa’ ‘~/tmp/scratch/xvfb-run.5nOUTD’ ‘~/tmp/scratch/xvfb-run.61HeFt’ ‘~/tmp/scratch/xvfb-run.6lk1WO’ ‘~/tmp/scratch/xvfb-run.7t7Fr7’ ‘~/tmp/scratch/xvfb-run.8j8L83’ ‘~/tmp/scratch/xvfb-run.Ajgf8V’ ‘~/tmp/scratch/xvfb-run.AsUx0W’ ‘~/tmp/scratch/xvfb-run.BFkGcJ’ ‘~/tmp/scratch/xvfb-run.BV5kce’ ‘~/tmp/scratch/xvfb-run.CvMPIw’ ‘~/tmp/scratch/xvfb-run.DECYXd’ ‘~/tmp/scratch/xvfb-run.DmQAqt’ ‘~/tmp/scratch/xvfb-run.FpnDij’ ‘~/tmp/scratch/xvfb-run.GGL5I9’ ‘~/tmp/scratch/xvfb-run.HFHcuQ’ ‘~/tmp/scratch/xvfb-run.IAhVfG’ ‘~/tmp/scratch/xvfb-run.InFa0Y’ ‘~/tmp/scratch/xvfb-run.Jbxkls’ ‘~/tmp/scratch/xvfb-run.KnoXsM’ ‘~/tmp/scratch/xvfb-run.L5NTjS’ ‘~/tmp/scratch/xvfb-run.LrMdtq’ ‘~/tmp/scratch/xvfb-run.MJLYQs’ ‘~/tmp/scratch/xvfb-run.OPgyyW’ ‘~/tmp/scratch/xvfb-run.OeT2Ky’ ‘~/tmp/scratch/xvfb-run.PDIxyy’ ‘~/tmp/scratch/xvfb-run.QbrXn3’ ‘~/tmp/scratch/xvfb-run.QsaQlu’ ‘~/tmp/scratch/xvfb-run.RpRhD9’ ‘~/tmp/scratch/xvfb-run.Sb5mtI’ ‘~/tmp/scratch/xvfb-run.SqhxXR’ ‘~/tmp/scratch/xvfb-run.Tb9wTl’ ‘~/tmp/scratch/xvfb-run.Te3v01’ ‘~/tmp/scratch/xvfb-run.VupSIh’ ‘~/tmp/scratch/xvfb-run.WHzU9a’ ‘~/tmp/scratch/xvfb-run.WqUDs6’ ‘~/tmp/scratch/xvfb-run.Y3vGCu’ ‘~/tmp/scratch/xvfb-run.Ye6WhR’ ‘~/tmp/scratch/xvfb-run.YjPoB7’ ‘~/tmp/scratch/xvfb-run.YseYkB’ ‘~/tmp/scratch/xvfb-run.agvzJb’ ‘~/tmp/scratch/xvfb-run.atDmum’ ‘~/tmp/scratch/xvfb-run.bYe6SK’ ‘~/tmp/scratch/xvfb-run.d5JIr2’ ‘~/tmp/scratch/xvfb-run.e921J5’ ‘~/tmp/scratch/xvfb-run.fElfBe’ ‘~/tmp/scratch/xvfb-run.iOGA38’ ‘~/tmp/scratch/xvfb-run.ibbbC3’ ‘~/tmp/scratch/xvfb-run.jewgZ3’ ‘~/tmp/scratch/xvfb-run.jmDmra’ ‘~/tmp/scratch/xvfb-run.jqX90w’ ‘~/tmp/scratch/xvfb-run.jtBA24’ ‘~/tmp/scratch/xvfb-run.kJIIID’ ‘~/tmp/scratch/xvfb-run.kbvD9V’ ‘~/tmp/scratch/xvfb-run.knk1OF’ ‘~/tmp/scratch/xvfb-run.kylgzT’ ‘~/tmp/scratch/xvfb-run.l8HUSX’ ‘~/tmp/scratch/xvfb-run.mFVkIt’ ‘~/tmp/scratch/xvfb-run.nTb4WM’ ‘~/tmp/scratch/xvfb-run.ohJMMP’ ‘~/tmp/scratch/xvfb-run.pGLUN7’ ‘~/tmp/scratch/xvfb-run.poZt07’ ‘~/tmp/scratch/xvfb-run.ppMSSg’ ‘~/tmp/scratch/xvfb-run.racaVY’ ‘~/tmp/scratch/xvfb-run.uAGYpa’ ‘~/tmp/scratch/xvfb-run.w6JAPO’ ‘~/tmp/scratch/xvfb-run.wDi8Ud’ ‘~/tmp/scratch/xvfb-run.wFB9KR’ ‘~/tmp/scratch/xvfb-run.xDvUrA’ ‘~/tmp/scratch/xvfb-run.xaSWOt’ ‘~/tmp/scratch/xvfb-run.xnpRmW’ ‘~/tmp/scratch/xvfb-run.y8Xu4U’ ‘~/tmp/scratch/xvfb-run.yUMFV2’ ‘/dev/shm/sm_segment.gimli1.1001.18b40000.0’ ‘/dev/shm/sm_segment.gimli1.1001.4a2b0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.60c70000.0’ ‘/dev/shm/sm_segment.gimli1.1001.6d110000.0’ ‘/dev/shm/sm_segment.gimli1.1001.73030000.0’ ‘/dev/shm/sm_segment.gimli1.1001.7da00000.0’ ‘/dev/shm/sm_segment.gimli1.1001.90090000.0’ ‘/dev/shm/sm_segment.gimli1.1001.90b90000.0’ ‘/dev/shm/sm_segment.gimli1.1001.ad2d0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.d0bc0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.db560000.0’ ‘/dev/shm/sm_segment.gimli1.1001.e1e60000.0’ ‘/dev/shm/sm_segment.gimli1.1001.e23f0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.e33d0000.0’ ‘/dev/shm/sm_segment.gimli1.1001.f9280000.0’ ‘~/.cache/pocl/uncached/tempfile_C0KneY’ ‘~/.cache/pocl/uncached/tempfile_DOSrxY’ ‘~/.cache/pocl/uncached/tempfile_GpUnbT’ ‘~/.cache/pocl/uncached/tempfile_OhhMCT’ ‘~/.cache/pocl/uncached/tempfile_TNTeJN’ ‘~/.cache/pocl/uncached/tempfile_UpG4VQ’ ‘~/.cache/pocl/uncached/tempfile_X1qTcd’ ‘~/.cache/pocl/uncached/tempfile_YSxyIM’ ‘~/.cache/pocl/uncached/tempfile_creWMz’ ‘~/.cache/pocl/uncached/tempfile_imJm8u’ ‘~/.cache/pocl/uncached/tempfile_loHQTO’ ‘~/.cache/pocl/uncached/tempfile_mEIbCd’ ‘~/.cache/pocl/uncached/tempfile_nXyz3z’ ‘~/.cache/pocl/uncached/tempfile_nnQgZC’ ‘~/.cache/pocl/uncached/tempfile_ot9q0Y’ ‘~/.cache/pocl/uncached/tempfile_quIHhR’
DONE

Status: 2 NOTEs