- using R Under development (unstable) (2025-12-19 r89206)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-11) 15.2.0
GNU Fortran (Debian 15.2.0-11) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘networkR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘networkR’ version ‘0.1.5’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘networkR’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [8s/11s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [2s/2s] ERROR
Running examples in ‘networkR-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: mksib
> ### Title: Generate variables (or lists) of siblings from a file of ids of
> ### persons and their father and mother.
> ### Aliases: mksib
> ### Keywords: manip
>
> ### ** Examples
>
>
> library( data.table )
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> id <- 1:12
> pid <- c(NA, 1, 1, 1, NA, 23, 45, 5, 5, 7, 12, NA)
> mid <- c(NA, NA, 2, 2, 12, NA, 46, 6, 6, 6, NA, 12)
> indd <- data.table( id, mid, pid )
> indata <- copy( indd )
> indata
id mid pid
<int> <num> <num>
1: 1 NA NA
2: 2 NA 1
3: 3 2 1
4: 4 2 1
5: 5 12 NA
6: 6 NA 23
7: 7 46 45
8: 8 6 5
9: 9 6 5
10: 10 6 7
11: 11 NA 12
12: 12 12 NA
>
> str( xx <- mksib( indata ) )
Error in `[.data.table`(setDT(indata), , `:=`(msibs, list(list(id))), :
attempt access index 3/3 in VECTOR_ELT
Calls: str -> mksib -> [ -> [.data.table
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [2s/3s] OK
Running ‘testthat.R’ [2s/3s]
- checking PDF version of manual ... [3s/5s] OK
- checking HTML version of manual ... [0s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR