• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 16:27:54 UTC
• checking for file ‘negenes/DESCRIPTION’ ... OK
• this is package ‘negenes’ version ‘1.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘negenes’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [0s/1s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0NAR3k’ ‘~/tmp/scratch/Rtmp0ajHvl’   ‘~/tmp/scratch/Rtmp1Rbzn1’ ‘~/tmp/scratch/Rtmp1sNHHi’   ‘~/tmp/scratch/Rtmp2FcEyL’ ‘~/tmp/scratch/Rtmp3HCoPf’   ‘~/tmp/scratch/Rtmp4m1jBN’ ‘~/tmp/scratch/Rtmp4nzRua’   ‘~/tmp/scratch/Rtmp710MCt’ ‘~/tmp/scratch/Rtmp7CBAIN’   ‘~/tmp/scratch/Rtmp87smh1’ ‘~/tmp/scratch/Rtmp8M4WXS’   ‘~/tmp/scratch/Rtmp8PvBvP’ ‘~/tmp/scratch/Rtmp8ysdlt’   ‘~/tmp/scratch/Rtmp92cvOa’ ‘~/tmp/scratch/Rtmp99fENn’   ‘~/tmp/scratch/Rtmp9UUNvp’ ‘~/tmp/scratch/Rtmp9WU4vu’   ‘~/tmp/scratch/Rtmp9gxWex’ ‘~/tmp/scratch/RtmpAIwggw’   ‘~/tmp/scratch/RtmpArkbpc’ ‘~/tmp/scratch/RtmpBzQQCQ’   ‘~/tmp/scratch/RtmpCDNmYh’ ‘~/tmp/scratch/RtmpCcz1mN’   ‘~/tmp/scratch/RtmpDBIKHZ’ ‘~/tmp/scratch/RtmpDRXGZ2’   ‘~/tmp/scratch/RtmpDvvnOc’ ‘~/tmp/scratch/RtmpE52q2i’   ‘~/tmp/scratch/RtmpEN5mNY’ ‘~/tmp/scratch/RtmpElfDJl’   ‘~/tmp/scratch/RtmpG5mnD5’ ‘~/tmp/scratch/RtmpGUY7QK’   ‘~/tmp/scratch/RtmpHWVCBz’ ‘~/tmp/scratch/RtmpI5pmxg’   ‘~/tmp/scratch/RtmpIRmv9w’ ‘~/tmp/scratch/RtmpIwqns4’   ‘~/tmp/scratch/RtmpJuR85f’ ‘~/tmp/scratch/RtmpKRBBlo’   ‘~/tmp/scratch/RtmpKS3gP5’ ‘~/tmp/scratch/RtmpMleC4g’   ‘~/tmp/scratch/RtmpN0DRdS’ ‘~/tmp/scratch/RtmpOCxt7W’   ‘~/tmp/scratch/RtmpPiXMG9’ ‘~/tmp/scratch/RtmpRTDmS9’   ‘~/tmp/scratch/RtmpRVduGg’ ‘~/tmp/scratch/RtmpRaeLNA’   ‘~/tmp/scratch/RtmpSR1RIb’ ‘~/tmp/scratch/RtmpT0Rebd’   ‘~/tmp/scratch/RtmpTRrYQ7’ ‘~/tmp/scratch/RtmpTnntpk’   ‘~/tmp/scratch/RtmpUEoFFm’ ‘~/tmp/scratch/RtmpUenADN’   ‘~/tmp/scratch/RtmpUrz9Ek’ ‘~/tmp/scratch/RtmpVUTfCU’   ‘~/tmp/scratch/RtmpWFoNH7’ ‘~/tmp/scratch/RtmpWfEnWJ’   ‘~/tmp/scratch/RtmpXgPVXT’ ‘~/tmp/scratch/RtmpZYnkDs’   ‘~/tmp/scratch/RtmpZahnx2’ ‘~/tmp/scratch/RtmpZhp6M4’   ‘~/tmp/scratch/Rtmpa8jtmv’ ‘~/tmp/scratch/RtmpaEnX1m’   ‘~/tmp/scratch/RtmpabgAP4’ ‘~/tmp/scratch/RtmpanzZfy’   ‘~/tmp/scratch/RtmpbmgdZp’ ‘~/tmp/scratch/RtmpcI0SpA’   ‘~/tmp/scratch/RtmpchTLN8’ ‘~/tmp/scratch/RtmpctFfzR’   ‘~/tmp/scratch/Rtmpe8oPVo’ ‘~/tmp/scratch/RtmpeAhUfV’   ‘~/tmp/scratch/RtmpeBeN8O’ ‘~/tmp/scratch/RtmpeWfYsx’   ‘~/tmp/scratch/RtmpejCNgE’ ‘~/tmp/scratch/RtmpfE1Zkf’   ‘~/tmp/scratch/RtmpfJfzpn’ ‘~/tmp/scratch/RtmpfqWqMh’   ‘~/tmp/scratch/RtmpghVW5r’ ‘~/tmp/scratch/Rtmphpqi9g’   ‘~/tmp/scratch/RtmpjIA4jy’ ‘~/tmp/scratch/RtmpkCaPrh’   ‘~/tmp/scratch/RtmpkHtnlR’ ‘~/tmp/scratch/RtmpkmgKa4’   ‘~/tmp/scratch/Rtmpm1pS8B’ ‘~/tmp/scratch/RtmpmCSEFZ’   ‘~/tmp/scratch/RtmpmkKFLq’ ‘~/tmp/scratch/RtmpmuvV2S’   ‘~/tmp/scratch/Rtmpny0bd4’ ‘~/tmp/scratch/RtmppHRK41’   ‘~/tmp/scratch/RtmppQiTaP’ ‘~/tmp/scratch/RtmpppZIs4’   ‘~/tmp/scratch/Rtmpq5Ta1m’ ‘~/tmp/scratch/Rtmpr8loF0’   ‘~/tmp/scratch/RtmprVIZRY’ ‘~/tmp/scratch/RtmprgKOL6’   ‘~/tmp/scratch/RtmpsXNHoX’ ‘~/tmp/scratch/RtmpsbxDDC’   ‘~/tmp/scratch/RtmpsxFQRM’ ‘~/tmp/scratch/RtmptAK9YB’   ‘~/tmp/scratch/Rtmpu47kBs’ ‘~/tmp/scratch/RtmpuIFgdm’   ‘~/tmp/scratch/RtmpvjJYSa’ ‘~/tmp/scratch/RtmpwdRaND’   ‘~/tmp/scratch/Rtmpy1fSHh’ ‘~/tmp/scratch/Rtmpy50b4n’   ‘~/tmp/scratch/RtmpyCsYs9’ ‘~/tmp/scratch/RtmpypPEyj’   ‘~/tmp/scratch/Rtmpz1qgUK’ ‘~/tmp/scratch/RtmpzADEfY’   ‘~/tmp/scratch/RtmpzSnpmO’ ‘~/tmp/scratch/xvfb-run.1RaGUH’   ‘~/tmp/scratch/xvfb-run.4KMAWo’ ‘~/tmp/scratch/xvfb-run.52sEc7’   ‘~/tmp/scratch/xvfb-run.6tE5s5’ ‘~/tmp/scratch/xvfb-run.9Nfrie’   ‘~/tmp/scratch/xvfb-run.CyO813’ ‘~/tmp/scratch/xvfb-run.D6MQZa’   ‘~/tmp/scratch/xvfb-run.EO5bo4’ ‘~/tmp/scratch/xvfb-run.G7gErp’   ‘~/tmp/scratch/xvfb-run.Hb7rwW’ ‘~/tmp/scratch/xvfb-run.I3AK4Q’   ‘~/tmp/scratch/xvfb-run.KDSvhS’ ‘~/tmp/scratch/xvfb-run.Mrw5hB’   ‘~/tmp/scratch/xvfb-run.N7D9Pn’ ‘~/tmp/scratch/xvfb-run.NzrQ3I’   ‘~/tmp/scratch/xvfb-run.OAYVtA’ ‘~/tmp/scratch/xvfb-run.UymoHH’   ‘~/tmp/scratch/xvfb-run.XAYRvs’ ‘~/tmp/scratch/xvfb-run.YezXBO’   ‘~/tmp/scratch/xvfb-run.Zak2Ia’ ‘~/tmp/scratch/xvfb-run.ajmpqy’   ‘~/tmp/scratch/xvfb-run.bUJiRp’ ‘~/tmp/scratch/xvfb-run.dZ8i0R’   ‘~/tmp/scratch/xvfb-run.dgFl7U’ ‘~/tmp/scratch/xvfb-run.ijW571’   ‘~/tmp/scratch/xvfb-run.l66UKX’ ‘~/tmp/scratch/xvfb-run.rrf3JX’   ‘~/tmp/scratch/xvfb-run.smyQY5’ ‘~/tmp/scratch/xvfb-run.vgHVBx’   ‘~/tmp/scratch/xvfb-run.y4uIV9’ ‘~/tmp/scratch/xvfb-run.ysrYjC’
• DONE

Status: 1 NOTE