• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘multilevelcoda/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘multilevelcoda’ version ‘1.3.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... INFO Package suggested but not available for checking: ‘cmdstanr’
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘multilevelcoda’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [6s/7s] OK
• checking whether the package can be loaded with stated dependencies ... [6s/7s] OK
• checking whether the package can be unloaded cleanly ... [5s/6s] OK
• checking whether the namespace can be loaded with stated dependencies ... [5s/7s] OK
• checking whether the namespace can be unloaded cleanly ... [6s/7s] OK
• checking loading without being on the library search path ... [8s/10s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
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• checking foreign function calls ... OK
• checking R code for possible problems ... [32s/42s] OK
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• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
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• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
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• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/10s] ERROR Running examples in ‘multilevelcoda-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: complr > ### Title: Indices from a (dataset of) Multilevel Composition(s) > ### Aliases: complr > > ### ** Examples > > x1 <- complr(data = mcompd, + parts = c("TST", "WAKE", "MVPA", "LPA", "SB"), + idvar = "ID", total = 1440)  A sequential binary partition (sbp), is required for ilr transform but is not supplied.  A default sbp, which is a pivot balance, will be applied. Error in `[.data.table`(tmp, , `:=`(paste0("b", v), mean(get(v), na.rm = TRUE)), :   attempt access index 10/10 in VECTOR_ELT Calls: complr -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [26s/20s] ERROR   Running ‘testthat.R’ [26s/19s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(data.table)      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      > library(multilevelcoda)      Attaching package: 'multilevelcoda'      The following object is masked from 'package:base':          sub      > library(extraoperators)   > library(brms)   Loading required package: Rcpp   Loading 'brms' package (version 2.23.0). Useful instructions   can be found by typing help('brms'). A more detailed introduction   to the package is available through vignette('brms_overview').      Attaching package: 'brms'      The following object is masked from 'package:stats':          ar      >   > test_check("multilevelcoda")   Starting 2 test processes.   > test-complr.R:   > test-complr.R: Attaching package: 'data.table'   > test-complr.R:   > test-complr.R: The following object is masked from 'package:base':   > test-complr.R:   > test-complr.R: %notin%   > test-complr.R:   > test-complr.R: Loading required package: Rcpp   > test-complr.R: Loading 'brms' package (version 2.23.0). Useful instructions   > test-complr.R: can be found by typing help('brms'). A more detailed introduction   > test-complr.R: to the package is available through vignette('brms_overview').   > test-complr.R:   > test-complr.R: Attaching package: 'brms'   > test-complr.R:   > test-complr.R: The following object is masked from 'package:stats':   > test-complr.R:   > test-complr.R: ar   > test-complr.R:   > test-complr.R: Loading required package: Matrix   > test-complr.R:   > test-complr.R: Attaching package: 'lme4'   > test-complr.R:   > test-complr.R: The following object is masked from 'package:brms':   > test-complr.R:   > test-complr.R: ngrps   > test-complr.R:   Saving _problems/test-complr-17.R   [ FAIL 1 | WARN 0 | SKIP 4 | PASS 0 ]      ══ Skipped tests (4) ═══════════════════════════════════════════════════════════   • On CRAN (4): 'test-brmcoda.R:1:1', 'test-plotcoda.R:1:1',     'test-substitution.R:1:1', 'test-update.R:1:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-complr.R:16:1'): (code run outside of `test_that()`) ───────────   Error in ``[.data.table`(tmp, , `:=`(paste0("b", v), mean(get(v), na.rm = TRUE)), by = eval(idvar))`: attempt access index 10/10 in VECTOR_ELT   Backtrace:       ▆    1. └─multilevelcoda::complr(...) at test-complr.R:16:1    2. ├─tmp[, `:=`(paste0("b", v), mean(get(v), na.rm = TRUE)), by = eval(idvar)]    3. └─data.table:::`[.data.table`(...)      [ FAIL 1 | WARN 0 | SKIP 4 | PASS 0 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
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• checking re-building of vignette outputs ... [7s/10s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [3s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs