• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 16:20:44 UTC
• checking for file ‘msm/DESCRIPTION’ ... OK
• this is package ‘msm’ version ‘1.8.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘msm’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [29s/34s] NOTE Found calls to structure() using deprecated special names:   msm/tests/testthat/test_datasumm.r (.Dim: 1, .Dimnames: 1, .Names: 1) '.Dim' should be changed to 'dim'. '.Dimnames' should be changed to 'dimnames'. '.Names' should be changed to 'names'.
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/6s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [51s/57s] OK   Running ‘test_base.R’ [50s/56s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [28s/34s] OK
• checking PDF version of manual ... [9s/13s] OK
• checking HTML version of manual ... [4s/5s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp09JLfy’ ‘~/tmp/scratch/Rtmp0Iigvj’   ‘~/tmp/scratch/Rtmp0bc2V1’ ‘~/tmp/scratch/Rtmp0dCdWh’   ‘~/tmp/scratch/Rtmp0yJ31O’ ‘~/tmp/scratch/Rtmp1DLTtS’   ‘~/tmp/scratch/Rtmp1bZi6I’ ‘~/tmp/scratch/Rtmp1wPttS’   ‘~/tmp/scratch/Rtmp29dKgP’ ‘~/tmp/scratch/Rtmp3bcILW’   ‘~/tmp/scratch/Rtmp3cBmYK’ ‘~/tmp/scratch/Rtmp4ZYCjo’   ‘~/tmp/scratch/Rtmp4yudmM’ ‘~/tmp/scratch/Rtmp56EyI2’   ‘~/tmp/scratch/Rtmp59lc7t’ ‘~/tmp/scratch/Rtmp5IAPEd’   ‘~/tmp/scratch/Rtmp5W9lG3’ ‘~/tmp/scratch/Rtmp5WONcE’   ‘~/tmp/scratch/Rtmp6etvuj’ ‘~/tmp/scratch/Rtmp70ubO9’   ‘~/tmp/scratch/Rtmp7XJKIc’ ‘~/tmp/scratch/Rtmp7iTXGq’   ‘~/tmp/scratch/Rtmp7ozrPu’ ‘~/tmp/scratch/Rtmp8BvoBi’   ‘~/tmp/scratch/Rtmp8YsgHH’ ‘~/tmp/scratch/Rtmp8uJzxZ’   ‘~/tmp/scratch/Rtmp9U0X4y’ ‘~/tmp/scratch/Rtmp9r4IrO’   ‘~/tmp/scratch/RtmpA4R5mw’ ‘~/tmp/scratch/RtmpA9cmno’   ‘~/tmp/scratch/RtmpAEabZY’ ‘~/tmp/scratch/RtmpAmArpL’   ‘~/tmp/scratch/RtmpBIQvmp’ ‘~/tmp/scratch/RtmpBk8yd9’   ‘~/tmp/scratch/RtmpC0vAPi’ ‘~/tmp/scratch/RtmpC4N717’   ‘~/tmp/scratch/RtmpCHV0JE’ ‘~/tmp/scratch/RtmpCHq16M’   ‘~/tmp/scratch/RtmpCsAnxE’ ‘~/tmp/scratch/RtmpD2NpSD’   ‘~/tmp/scratch/RtmpDYivp2’ ‘~/tmp/scratch/RtmpE85WWs’   ‘~/tmp/scratch/RtmpExGdFY’ ‘~/tmp/scratch/RtmpF4mtAU’   ‘~/tmp/scratch/RtmpFiTdeT’ ‘~/tmp/scratch/RtmpFjy5nr’   ‘~/tmp/scratch/RtmpGTjSRb’ ‘~/tmp/scratch/RtmpGq6zQ7’   ‘~/tmp/scratch/RtmpHgxhK2’ ‘~/tmp/scratch/RtmpI0s9lP’   ‘~/tmp/scratch/RtmpI6J3UP’ ‘~/tmp/scratch/RtmpIIfIj9’   ‘~/tmp/scratch/RtmpIPFtUL’ ‘~/tmp/scratch/RtmpIkCOfo’   ‘~/tmp/scratch/RtmpIqVFJh’ ‘~/tmp/scratch/RtmpIsIurH’   ‘~/tmp/scratch/RtmpJHX6Cv’ ‘~/tmp/scratch/RtmpJp6s4I’   ‘~/tmp/scratch/RtmpK8JCau’ ‘~/tmp/scratch/RtmpK9mJUd’   ‘~/tmp/scratch/RtmpLDPdNt’ ‘~/tmp/scratch/RtmpLwmk6l’   ‘~/tmp/scratch/RtmpMJnhjG’ ‘~/tmp/scratch/RtmpMwsPN8’   ‘~/tmp/scratch/RtmpNBvyaO’ ‘~/tmp/scratch/RtmpNuwniF’   ‘~/tmp/scratch/RtmpO7vD8O’ ‘~/tmp/scratch/RtmpO95OZT’   ‘~/tmp/scratch/RtmpPAMT9M’ ‘~/tmp/scratch/RtmpQ5rOS7’   ‘~/tmp/scratch/RtmpQEBOr2’ ‘~/tmp/scratch/RtmpQIDumL’   ‘~/tmp/scratch/RtmpQZ8XPM’ ‘~/tmp/scratch/RtmpQrL8j4’   ‘~/tmp/scratch/RtmpR4S5zR’ ‘~/tmp/scratch/RtmpRvJHNA’   ‘~/tmp/scratch/RtmpS4XcsF’ ‘~/tmp/scratch/RtmpStrkLZ’   ‘~/tmp/scratch/RtmpTKcy90’ ‘~/tmp/scratch/RtmpTMEj40’   ‘~/tmp/scratch/RtmpTTD8cu’ ‘~/tmp/scratch/RtmpTg1GVZ’   ‘~/tmp/scratch/RtmpTzOAqd’ ‘~/tmp/scratch/RtmpUChsdE’   ‘~/tmp/scratch/RtmpUE3ujR’ ‘~/tmp/scratch/RtmpULOKHR’   ‘~/tmp/scratch/RtmpUNedoo’ ‘~/tmp/scratch/RtmpUyjRB1’   ‘~/tmp/scratch/RtmpV1vGhw’ ‘~/tmp/scratch/RtmpV2NPY7’   ‘~/tmp/scratch/RtmpVaGT7S’ ‘~/tmp/scratch/RtmpVe4su7’   ‘~/tmp/scratch/RtmpWCbOpV’ ‘~/tmp/scratch/RtmpWyVkFA’   ‘~/tmp/scratch/RtmpXCacdM’ ‘~/tmp/scratch/RtmpXDQIAB’   ‘~/tmp/scratch/RtmpXP82iV’ ‘~/tmp/scratch/RtmpYDvlKA’   ‘~/tmp/scratch/RtmpZ2SPE9’ ‘~/tmp/scratch/RtmpaFFVM3’   ‘~/tmp/scratch/RtmpaMZQwS’ ‘~/tmp/scratch/RtmpaNiexc’   ‘~/tmp/scratch/RtmpaWntAt’ ‘~/tmp/scratch/RtmpamU8oV’   ‘~/tmp/scratch/RtmpaoNWzM’ ‘~/tmp/scratch/RtmpbB1ngM’   ‘~/tmp/scratch/RtmpbGMCh2’ ‘~/tmp/scratch/RtmpbsMMlC’   ‘~/tmp/scratch/RtmpcWv2VR’ ‘~/tmp/scratch/RtmpcvVnnD’   ‘~/tmp/scratch/Rtmpd1iWgA’ ‘~/tmp/scratch/Rtmpd394iS’   ‘~/tmp/scratch/RtmpdVX9yP’ ‘~/tmp/scratch/RtmpdhOhdv’   ‘~/tmp/scratch/Rtmpe7CMvO’ ‘~/tmp/scratch/RtmpeTJurJ’   ‘~/tmp/scratch/Rtmpf0fZBi’ ‘~/tmp/scratch/Rtmpf7cYNk’   ‘~/tmp/scratch/RtmpfLNr8y’ ‘~/tmp/scratch/RtmpfNtcsO’   ‘~/tmp/scratch/RtmpfX64P2’ ‘~/tmp/scratch/RtmpgK3OFP’   ‘~/tmp/scratch/RtmpgWY3cN’ ‘~/tmp/scratch/RtmpggVYBm’   ‘~/tmp/scratch/RtmpgofGWW’ ‘~/tmp/scratch/RtmpgomYZC’   ‘~/tmp/scratch/RtmphDFbVh’ ‘~/tmp/scratch/RtmphKj0zy’   ‘~/tmp/scratch/RtmphMYOSK’ ‘~/tmp/scratch/RtmphpmlQV’   ‘~/tmp/scratch/Rtmphwcqi6’ ‘~/tmp/scratch/Rtmpi892pU’   ‘~/tmp/scratch/RtmpiY4685’ ‘~/tmp/scratch/RtmpiqSiwR’   ‘~/tmp/scratch/Rtmpj0TiIK’ ‘~/tmp/scratch/Rtmpj7S7Sp’   ‘~/tmp/scratch/Rtmpk6Yhl2’ ‘~/tmp/scratch/Rtmpk9X7Gs’   ‘~/tmp/scratch/RtmpkZvQei’ ‘~/tmp/scratch/RtmpkdBkE8’   ‘~/tmp/scratch/RtmplcS8M5’ ‘~/tmp/scratch/Rtmplcf4Qo’   ‘~/tmp/scratch/Rtmpm9T8vU’ ‘~/tmp/scratch/RtmpmdsgKf’   ‘~/tmp/scratch/RtmpmfNbEM’ ‘~/tmp/scratch/RtmpngNgkx’   ‘~/tmp/scratch/RtmpoI66Ra’ ‘~/tmp/scratch/RtmpoWX0ss’   ‘~/tmp/scratch/RtmpoZFNrm’ ‘~/tmp/scratch/Rtmpoy801d’   ‘~/tmp/scratch/RtmpqbPg6R’ ‘~/tmp/scratch/RtmpqsqAGt’   ‘~/tmp/scratch/Rtmpr6sbsa’ ‘~/tmp/scratch/RtmprRmhHK’   ‘~/tmp/scratch/RtmprpzUBc’ ‘~/tmp/scratch/Rtmprs74TZ’   ‘~/tmp/scratch/Rtmps8G0WS’ ‘~/tmp/scratch/Rtmps9I7T2’   ‘~/tmp/scratch/RtmpsPuNKd’ ‘~/tmp/scratch/RtmpsitdIx’   ‘~/tmp/scratch/RtmpuhZvNS’ ‘~/tmp/scratch/RtmpukQ7ce’   ‘~/tmp/scratch/Rtmpuw3kKn’ ‘~/tmp/scratch/RtmpwAHEDj’   ‘~/tmp/scratch/Rtmpwa0msd’ ‘~/tmp/scratch/RtmpwypjlX’   ‘~/tmp/scratch/RtmpxF1uy8’ ‘~/tmp/scratch/RtmpxHIPGE’   ‘~/tmp/scratch/RtmpxRcWhj’ ‘~/tmp/scratch/RtmpxkyChI’   ‘~/tmp/scratch/RtmpxzC6sm’ ‘~/tmp/scratch/RtmpyfdeWA’   ‘~/tmp/scratch/RtmpykJKet’ ‘~/tmp/scratch/Rtmpz5r1co’   ‘~/tmp/scratch/RtmpzCRuSD’ ‘~/tmp/scratch/Rtmpze2XP4’   ‘~/tmp/scratch/RtmpztubTf’ ‘~/tmp/scratch/xvfb-run.0bHT8X’   ‘~/tmp/scratch/xvfb-run.4Quwxu’ ‘~/tmp/scratch/xvfb-run.4zmBJy’   ‘~/tmp/scratch/xvfb-run.6xRdiD’ ‘~/tmp/scratch/xvfb-run.82z6ho’   ‘~/tmp/scratch/xvfb-run.8NkPdo’ ‘~/tmp/scratch/xvfb-run.95Zeqy’   ‘~/tmp/scratch/xvfb-run.994Tzh’ ‘~/tmp/scratch/xvfb-run.9x0L82’   ‘~/tmp/scratch/xvfb-run.ATVsAB’ ‘~/tmp/scratch/xvfb-run.AnJ4T3’   ‘~/tmp/scratch/xvfb-run.D3ktzO’ ‘~/tmp/scratch/xvfb-run.DlDrWD’   ‘~/tmp/scratch/xvfb-run.Du1PBU’ ‘~/tmp/scratch/xvfb-run.Dwo09m’   ‘~/tmp/scratch/xvfb-run.F4v5dZ’ ‘~/tmp/scratch/xvfb-run.F5ynZ9’   ‘~/tmp/scratch/xvfb-run.GEOj3O’ ‘~/tmp/scratch/xvfb-run.GcRIvP’   ‘~/tmp/scratch/xvfb-run.HFXEZD’ ‘~/tmp/scratch/xvfb-run.HO24Wf’   ‘~/tmp/scratch/xvfb-run.IxmXcp’ ‘~/tmp/scratch/xvfb-run.KIn8Iv’   ‘~/tmp/scratch/xvfb-run.NNMAbF’ ‘~/tmp/scratch/xvfb-run.OEavda’   ‘~/tmp/scratch/xvfb-run.PFWIEI’ ‘~/tmp/scratch/xvfb-run.PSTQ2K’   ‘~/tmp/scratch/xvfb-run.R9EIA5’ ‘~/tmp/scratch/xvfb-run.SYYFEo’   ‘~/tmp/scratch/xvfb-run.T0EDi7’ ‘~/tmp/scratch/xvfb-run.TDzBZb’   ‘~/tmp/scratch/xvfb-run.UELT3k’ ‘~/tmp/scratch/xvfb-run.Umha1d’   ‘~/tmp/scratch/xvfb-run.UyG8L1’ ‘~/tmp/scratch/xvfb-run.VkaWN9’   ‘~/tmp/scratch/xvfb-run.WiIkeR’ ‘~/tmp/scratch/xvfb-run.XZSWKd’   ‘~/tmp/scratch/xvfb-run.ZPIMVD’ ‘~/tmp/scratch/xvfb-run.bVtNpM’   ‘~/tmp/scratch/xvfb-run.cw97F0’ ‘~/tmp/scratch/xvfb-run.cweBER’   ‘~/tmp/scratch/xvfb-run.dFMKWZ’ ‘~/tmp/scratch/xvfb-run.deNkUz’   ‘~/tmp/scratch/xvfb-run.eMoJfq’ ‘~/tmp/scratch/xvfb-run.eU7StA’   ‘~/tmp/scratch/xvfb-run.flkg0V’ ‘~/tmp/scratch/xvfb-run.fq7tqT’   ‘~/tmp/scratch/xvfb-run.gzI92t’ ‘~/tmp/scratch/xvfb-run.hnoL3v’   ‘~/tmp/scratch/xvfb-run.i4YXQo’ ‘~/tmp/scratch/xvfb-run.jNxT0t’   ‘~/tmp/scratch/xvfb-run.jRH6bb’ ‘~/tmp/scratch/xvfb-run.jeeJen’   ‘~/tmp/scratch/xvfb-run.jlouWj’ ‘~/tmp/scratch/xvfb-run.k2Grhb’   ‘~/tmp/scratch/xvfb-run.kLZahK’ ‘~/tmp/scratch/xvfb-run.l9hjte’   ‘~/tmp/scratch/xvfb-run.me5T4F’ ‘~/tmp/scratch/xvfb-run.meMW9D’   ‘~/tmp/scratch/xvfb-run.oTScR9’ ‘~/tmp/scratch/xvfb-run.oeHwIf’   ‘~/tmp/scratch/xvfb-run.ouARbW’ ‘~/tmp/scratch/xvfb-run.pSSqb0’   ‘~/tmp/scratch/xvfb-run.pbS3Wx’ ‘~/tmp/scratch/xvfb-run.qKK1VH’   ‘~/tmp/scratch/xvfb-run.qS2Stj’ ‘~/tmp/scratch/xvfb-run.rtlsie’   ‘~/tmp/scratch/xvfb-run.sSJot7’ ‘~/tmp/scratch/xvfb-run.uDW17e’   ‘~/tmp/scratch/xvfb-run.ubsGbZ’ ‘~/tmp/scratch/xvfb-run.upPkBy’   ‘~/tmp/scratch/xvfb-run.vHwtmk’ ‘~/tmp/scratch/xvfb-run.wLgfDA’   ‘~/tmp/scratch/xvfb-run.wQOeHQ’ ‘~/tmp/scratch/xvfb-run.z8PKTB’   ‘~/tmp/scratch/xvfb-run.zauPme’ ‘~/tmp/scratch/xvfb-run.zsdJUv’
• DONE

Status: 2 NOTEs