• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 16:31:10 UTC
• checking for file ‘mrMLM/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mrMLM’ version ‘5.0.1’
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mrMLM’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [44s/57s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) MultiManhattan.Rd:33: Lost braces; missing escapes or markup?     33 | \item{LogTimes}{Magnification of {-log10(P-value)}; the default is        | ^ checkRd: (-1) MultiManhattan.Rd:35: Lost braces; missing escapes or markup?     35 | \item{LODTimes}{Magnification of {LOD score}; the default is 1.2.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [18s/49s] OK Examples with CPU (user + system) or elapsed time > 5s          user system elapsed mrMLM 2.207 0.109 6.487 pLARmEB 2.061 0.114 9.419 pKWmEB 2.064 0.016 5.513
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0DEOSJ’ ‘~/tmp/scratch/Rtmp0QvT7i’   ‘~/tmp/scratch/Rtmp0dap1c’ ‘~/tmp/scratch/Rtmp1BuabR’   ‘~/tmp/scratch/Rtmp2OfnCz’ ‘~/tmp/scratch/Rtmp2XjA77’   ‘~/tmp/scratch/Rtmp2Z39rS’ ‘~/tmp/scratch/Rtmp3RtznV’   ‘~/tmp/scratch/Rtmp3h6ptx’ ‘~/tmp/scratch/Rtmp42SGZK’   ‘~/tmp/scratch/Rtmp4XO639’ ‘~/tmp/scratch/Rtmp4u74bk’   ‘~/tmp/scratch/Rtmp5EBq5D’ ‘~/tmp/scratch/Rtmp5IV5He’   ‘~/tmp/scratch/Rtmp5P6b0H’ ‘~/tmp/scratch/Rtmp5T70SW’   ‘~/tmp/scratch/Rtmp5vij1h’ ‘~/tmp/scratch/Rtmp63Wrve’   ‘~/tmp/scratch/Rtmp6LIhoD’ ‘~/tmp/scratch/Rtmp6yaVKI’   ‘~/tmp/scratch/Rtmp7VsG7v’ ‘~/tmp/scratch/Rtmp86PltS’   ‘~/tmp/scratch/Rtmp8PkEeA’ ‘~/tmp/scratch/Rtmp9ueb1M’   ‘~/tmp/scratch/RtmpAmXaDT’ ‘~/tmp/scratch/RtmpBjhPrh’   ‘~/tmp/scratch/RtmpCl9oqC’ ‘~/tmp/scratch/RtmpDAFk8b’   ‘~/tmp/scratch/RtmpDAXTIr’ ‘~/tmp/scratch/RtmpDFT8La’   ‘~/tmp/scratch/RtmpDFx4gP’ ‘~/tmp/scratch/RtmpDlQCas’   ‘~/tmp/scratch/RtmpDoeWSr’ ‘~/tmp/scratch/RtmpE4Gpwq’   ‘~/tmp/scratch/RtmpENwZKS’ ‘~/tmp/scratch/RtmpEgknTb’   ‘~/tmp/scratch/RtmpEuj5Dv’ ‘~/tmp/scratch/RtmpF1fvn0’   ‘~/tmp/scratch/RtmpFOTnwd’ ‘~/tmp/scratch/RtmpFP4Bsy’   ‘~/tmp/scratch/RtmpFYZuaa’ ‘~/tmp/scratch/RtmpG4pkLu’   ‘~/tmp/scratch/RtmpGLnJxi’ ‘~/tmp/scratch/RtmpGZ6t3A’   ‘~/tmp/scratch/RtmpGnMxDr’ ‘~/tmp/scratch/RtmpICemg5’   ‘~/tmp/scratch/RtmpIeLYfz’ ‘~/tmp/scratch/RtmpJ29bKd’   ‘~/tmp/scratch/RtmpJGL3lA’ ‘~/tmp/scratch/RtmpJKubw5’   ‘~/tmp/scratch/RtmpJhQSQ4’ ‘~/tmp/scratch/RtmpK6K8vV’   ‘~/tmp/scratch/RtmpKCHWvy’ ‘~/tmp/scratch/RtmpL1CYA2’   ‘~/tmp/scratch/RtmpL51wMf’ ‘~/tmp/scratch/RtmpLeVF3A’   ‘~/tmp/scratch/RtmpNAfQgB’ ‘~/tmp/scratch/RtmpNEHOey’   ‘~/tmp/scratch/RtmpNQYN2m’ ‘~/tmp/scratch/RtmpNwSuNm’   ‘~/tmp/scratch/RtmpNzF0XU’ ‘~/tmp/scratch/RtmpOL4Blp’   ‘~/tmp/scratch/RtmpOtWktY’ ‘~/tmp/scratch/RtmpPM05RU’   ‘~/tmp/scratch/RtmpPVde7S’ ‘~/tmp/scratch/RtmpPq2GFf’   ‘~/tmp/scratch/RtmpQ6MuXb’ ‘~/tmp/scratch/RtmpQ6NBO2’   ‘~/tmp/scratch/RtmpQEhw9F’ ‘~/tmp/scratch/RtmpQbdBxA’   ‘~/tmp/scratch/RtmpQx0bjt’ ‘~/tmp/scratch/RtmpR1vbw7’   ‘~/tmp/scratch/RtmpSCAQlJ’ ‘~/tmp/scratch/RtmpSK2Nwj’   ‘~/tmp/scratch/RtmpSPiIpE’ ‘~/tmp/scratch/RtmpT2ZSTL’   ‘~/tmp/scratch/RtmpTPGukj’ ‘~/tmp/scratch/RtmpTlPo5y’   ‘~/tmp/scratch/RtmpUJGDXh’ ‘~/tmp/scratch/RtmpUNsRBn’   ‘~/tmp/scratch/RtmpUTOa6i’ ‘~/tmp/scratch/RtmpVkfq3K’   ‘~/tmp/scratch/RtmpVl5Bhs’ ‘~/tmp/scratch/RtmpVo6ArO’   ‘~/tmp/scratch/RtmpWCELoK’ ‘~/tmp/scratch/RtmpWguxxF’   ‘~/tmp/scratch/RtmpX65iwm’ ‘~/tmp/scratch/RtmpXIGcDp’   ‘~/tmp/scratch/RtmpXSiaA6’ ‘~/tmp/scratch/RtmpXyu3IE’   ‘~/tmp/scratch/RtmpYkhmuY’ ‘~/tmp/scratch/RtmpZPIRg1’   ‘~/tmp/scratch/RtmpadT6Am’ ‘~/tmp/scratch/RtmpafGNFm’   ‘~/tmp/scratch/RtmpapxQkO’ ‘~/tmp/scratch/Rtmpb3X8RK’   ‘~/tmp/scratch/RtmpbJucyc’ ‘~/tmp/scratch/RtmpcPAJQ0’   ‘~/tmp/scratch/Rtmpd2ImMw’ ‘~/tmp/scratch/RtmpdFlEi1’   ‘~/tmp/scratch/RtmpdSZdJ4’ ‘~/tmp/scratch/RtmpdV2XRg’   ‘~/tmp/scratch/RtmpdaB95Q’ ‘~/tmp/scratch/Rtmpec8CcQ’   ‘~/tmp/scratch/Rtmpf2cDQL’ ‘~/tmp/scratch/RtmpfcOcCB’   ‘~/tmp/scratch/RtmphtK9oz’ ‘~/tmp/scratch/Rtmpi1Xmtb’   ‘~/tmp/scratch/RtmpiFBdyz’ ‘~/tmp/scratch/RtmpiUC0cM’   ‘~/tmp/scratch/Rtmpj9plgS’ ‘~/tmp/scratch/RtmpkyA3bV’   ‘~/tmp/scratch/Rtmpkzg5r0’ ‘~/tmp/scratch/Rtmpl4h2Nb’   ‘~/tmp/scratch/RtmplNqD29’ ‘~/tmp/scratch/RtmplRxtGn’   ‘~/tmp/scratch/RtmplfO4uv’ ‘~/tmp/scratch/RtmplxzhMl’   ‘~/tmp/scratch/Rtmpmdakg8’ ‘~/tmp/scratch/RtmpnObKXk’   ‘~/tmp/scratch/Rtmpna0Vr6’ ‘~/tmp/scratch/RtmpneQ79V’   ‘~/tmp/scratch/RtmpprCfS8’ ‘~/tmp/scratch/RtmpqGh8cV’   ‘~/tmp/scratch/RtmpqOmRbb’ ‘~/tmp/scratch/RtmpqYDwdD’   ‘~/tmp/scratch/RtmpqaQAam’ ‘~/tmp/scratch/RtmprKSWxc’   ‘~/tmp/scratch/RtmpsNIVmO’ ‘~/tmp/scratch/RtmpsNxkxj’   ‘~/tmp/scratch/RtmpsTfnkF’ ‘~/tmp/scratch/RtmpsVhlYZ’   ‘~/tmp/scratch/Rtmpt2sLyx’ ‘~/tmp/scratch/RtmpukM37f’   ‘~/tmp/scratch/RtmpvT3GXO’ ‘~/tmp/scratch/Rtmpvc92Ce’   ‘~/tmp/scratch/RtmpvqpmeO’ ‘~/tmp/scratch/Rtmpw1ZrHH’   ‘~/tmp/scratch/Rtmpwnsbt2’ ‘~/tmp/scratch/Rtmpwvs5wj’   ‘~/tmp/scratch/RtmpxQvEmp’ ‘~/tmp/scratch/RtmpxTyROg’   ‘~/tmp/scratch/RtmpxjF8Ag’ ‘~/tmp/scratch/RtmpxjKCQE’   ‘~/tmp/scratch/RtmpxkKHxE’ ‘~/tmp/scratch/RtmpznrH5d’   ‘~/tmp/scratch/Rtmpzv5C9b’ ‘~/tmp/scratch/ccfN1eYn.s’   ‘~/tmp/scratch/xvfb-run.0Aigql’ ‘~/tmp/scratch/xvfb-run.11Qw9E’   ‘~/tmp/scratch/xvfb-run.1Ad5Id’ ‘~/tmp/scratch/xvfb-run.1OTzGM’   ‘~/tmp/scratch/xvfb-run.2LqEf3’ ‘~/tmp/scratch/xvfb-run.2OZrJ6’   ‘~/tmp/scratch/xvfb-run.3M6IWM’ ‘~/tmp/scratch/xvfb-run.4pV4xG’   ‘~/tmp/scratch/xvfb-run.4uyydR’ ‘~/tmp/scratch/xvfb-run.5v0jdx’   ‘~/tmp/scratch/xvfb-run.74OUzy’ ‘~/tmp/scratch/xvfb-run.7kDiru’   ‘~/tmp/scratch/xvfb-run.AJUxiC’ ‘~/tmp/scratch/xvfb-run.B82FSx’   ‘~/tmp/scratch/xvfb-run.Bb3lct’ ‘~/tmp/scratch/xvfb-run.CKUl8n’   ‘~/tmp/scratch/xvfb-run.CznpHj’ ‘~/tmp/scratch/xvfb-run.DPkfgL’   ‘~/tmp/scratch/xvfb-run.Db5pv7’ ‘~/tmp/scratch/xvfb-run.DyAGhK’   ‘~/tmp/scratch/xvfb-run.EposHJ’ ‘~/tmp/scratch/xvfb-run.F0KA65’   ‘~/tmp/scratch/xvfb-run.JH9Zni’ ‘~/tmp/scratch/xvfb-run.JlgI85’   ‘~/tmp/scratch/xvfb-run.KM5p8B’ ‘~/tmp/scratch/xvfb-run.LTlpjE’   ‘~/tmp/scratch/xvfb-run.MuyHFC’ ‘~/tmp/scratch/xvfb-run.NPPuia’   ‘~/tmp/scratch/xvfb-run.NSlPJt’ ‘~/tmp/scratch/xvfb-run.NaKMNC’   ‘~/tmp/scratch/xvfb-run.QD9baQ’ ‘~/tmp/scratch/xvfb-run.QVZEEq’   ‘~/tmp/scratch/xvfb-run.QXryED’ ‘~/tmp/scratch/xvfb-run.RU1uY2’   ‘~/tmp/scratch/xvfb-run.UAzRtJ’ ‘~/tmp/scratch/xvfb-run.aP4oB6’   ‘~/tmp/scratch/xvfb-run.aimDX7’ ‘~/tmp/scratch/xvfb-run.b7kVr0’   ‘~/tmp/scratch/xvfb-run.c4tQnZ’ ‘~/tmp/scratch/xvfb-run.cIQOBI’   ‘~/tmp/scratch/xvfb-run.cmZTrm’ ‘~/tmp/scratch/xvfb-run.dA0p6u’   ‘~/tmp/scratch/xvfb-run.dIz3Rx’ ‘~/tmp/scratch/xvfb-run.dNYNLb’   ‘~/tmp/scratch/xvfb-run.dXi5jW’ ‘~/tmp/scratch/xvfb-run.e4koSU’   ‘~/tmp/scratch/xvfb-run.eOWW9K’ ‘~/tmp/scratch/xvfb-run.gne4vE’   ‘~/tmp/scratch/xvfb-run.h1ljHw’ ‘~/tmp/scratch/xvfb-run.h32aCY’   ‘~/tmp/scratch/xvfb-run.h98tg4’ ‘~/tmp/scratch/xvfb-run.iecYC3’   ‘~/tmp/scratch/xvfb-run.jA1uGg’ ‘~/tmp/scratch/xvfb-run.jXz2M8’   ‘~/tmp/scratch/xvfb-run.kTN0IS’ ‘~/tmp/scratch/xvfb-run.kpxI5w’   ‘~/tmp/scratch/xvfb-run.l5DjP3’ ‘~/tmp/scratch/xvfb-run.lfyxkc’   ‘~/tmp/scratch/xvfb-run.m10Q2Z’ ‘~/tmp/scratch/xvfb-run.o0455Z’   ‘~/tmp/scratch/xvfb-run.oXq1Jr’ ‘~/tmp/scratch/xvfb-run.ofn4uo’   ‘~/tmp/scratch/xvfb-run.q2Otnp’ ‘~/tmp/scratch/xvfb-run.tDwXVC’   ‘~/tmp/scratch/xvfb-run.vdGMzJ’ ‘~/tmp/scratch/xvfb-run.wj06As’   ‘~/tmp/scratch/xvfb-run.z3lwn2’ ‘~/tmp/scratch/xvfb-run.zI86wI’
• DONE

Status: 2 NOTEs