- using R Under development (unstable) (2025-08-29 r88740)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-1) 15.2.0
GNU Fortran (Debian 15.2.0-1) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘modelbased/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘modelbased’ version ‘0.12.0’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/2s] OK
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘modelbased’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking whether startup messages can be suppressed ... [0s/0s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s/17s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [19s/23s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
estimate_contrasts 6.862 0.355 8.323
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [44s/24s] ERROR
Running ‘testthat.R’ [44s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> #
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> library(testthat)
> library(modelbased)
>
> test_check("modelbased")
Starting 2 test processes
[ FAIL 2 | WARN 0 | SKIP 46 | PASS 224 ]
══ Skipped tests (46) ══════════════════════════════════════════════════════════
• .Platform$OS.type == "windows" is not TRUE (1):
'test-estimate_predicted.R:58:3'
• On CRAN (38): 'test-backtransform_invlink.R:1:1', 'test-betareg.R:1:1',
'test-bias_correction.R:1:1', 'test-brms-marginaleffects.R:1:1',
'test-brms.R:1:1', 'test-estimate_contrasts-average.R:1:1',
'test-estimate_contrasts.R:1:1',
'test-estimate_contrasts_bookexamples.R:1:1',
'test-estimate_contrasts_effectsize.R:1:1',
'test-estimate_contrasts_methods.R:1:1', 'test-estimate_filter.R:1:1',
'test-estimate_grouplevel.R:54:3', 'test-estimate_grouplevel.R:72:3',
'test-estimate_grouplevel.R:93:3', 'test-estimate_grouplevel.R:123:3',
'test-estimate_means-average.R:1:1', 'test-estimate_means.R:1:1',
'test-estimate_means_ci.R:1:1', 'test-estimate_means_counterfactuals.R:1:1',
'test-estimate_means_dotargs.R:1:1',
'test-estimate_means_marginalization.R:1:1',
'test-estimate_means_mixed.R:1:1', 'test-estimate_slopes.R:129:1',
'test-g_computation.R:1:1', 'test-get_marginaltrends.R:1:1',
'test-glmmTMB.R:1:1', 'test-joint_test.R:1:1', 'test-keep_iterations.R:1:1',
'test-maihda.R:1:1', 'test-mice.R:1:1', 'test-ordinal.R:1:1',
'test-plot-grouplevel.R:1:1', 'test-predict-dpar.R:1:1',
'test-standardize.R:1:1', 'test-summary_estimate_slopes.R:3:1',
'test-transform_response.R:16:3', 'test-vcov.R:1:1', 'test-zeroinfl.R:1:1'
• On Linux (7): 'test-plot-facet.R:1:1', 'test-plot-flexible_numeric.R:1:1',
'test-plot-ordinal.R:1:1', 'test-plot-slopes.R:1:1', 'test-plot.R:1:1',
'test-print.R:1:1', 'test-scoping_issues.R:1:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-attributes_estimatefun.R:93:3'): attributes_means, slopes ────
Names of attributes(estim) ('names', 'class', 'row.names', 'trend', 'p_adjust', 'transform', 'coef_name', 'slope', 'ci', 'model_info', 'keep_iterations', 'vcov', 'table_title', 'table_footer', 'model', 'response') don't match 'names', 'class', 'row.names', 'trend', 'comparison', 'p_adjust', 'transform', 'coef_name', 'slope', 'ci', 'model_info', 'keep_iterations', 'vcov', 'table_title', 'table_footer', 'model', 'response'
── Error ('test-estimate_slopes.R:81:3'): estimate_slopes, johnson-neyman p-adjust ──
Error: The entered object is not a model object.
Backtrace:
▆
1. └─modelbased::estimate_slopes(...) at test-estimate_slopes.R:81:3
2. └─modelbased::get_marginaltrends(...)
3. └─modelbased:::.p_adjust(model, estimated, p_adjust, verbose, ...)
4. └─modelbased:::.p_adjust_esarey(params)
5. ├─insight::get_df(model, type = "wald")
6. └─insight:::get_df.default(model, type = "wald")
7. ├─insight::find_statistic(x)
8. └─insight:::find_statistic.default(x)
9. └─insight::format_error("The entered object is not a model object.")
10. └─insight::format_alert(..., type = "error")
[ FAIL 2 | WARN 0 | SKIP 46 | PASS 224 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [1s/1s] OK
- checking PDF version of manual ... [7s/11s] OK
- checking HTML version of manual ... [2s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR