• using R Under development (unstable) (2025-09-14 r88831)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-3) 15.2.0     GNU Fortran (Debian 15.2.0-3) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘miRetrieve/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘miRetrieve’ version ‘1.3.4’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘miRetrieve’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/16s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... NONE
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [23s/28s] ERROR   Running ‘testthat.R’ [23s/28s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(miRetrieve)   >   > test_check("miRetrieve")   [ FAIL 6 | WARN 15 | SKIP 0 | PASS 204 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-fitlda.R:35:5'): Tests that 'plot_lda_term' returns a plot ───   `plot_lda` has type 'object', not 'list'.   ── Failure ('test-jointargets.R:69:5'): Tests that targets can be plotted ──────   typeof(plot_target) not equal to "list".   1/1 mismatches   x[1]: "object"   y[1]: "list"   ── Failure ('test-plotscore.R:41:5'): Tests plotting scores ────────────────────   typeof(plot_animal) not equal to "list".   1/1 mismatches   x[1]: "object"   y[1]: "list"   ── Failure ('test-plotscore.R:42:5'): Tests plotting scores ────────────────────   typeof(plot_patients) not equal to "list".   1/1 mismatches   x[1]: "object"   y[1]: "list"   ── Failure ('test-plotscore.R:43:5'): Tests plotting scores ────────────────────   typeof(plot_biomarker) not equal to "list".   1/1 mismatches   x[1]: "object"   y[1]: "list"   ── Failure ('test-plotscore.R:44:5'): Tests plotting scores ────────────────────   typeof(plot_own) not equal to "list".   1/1 mismatches   x[1]: "object"   y[1]: "list"      [ FAIL 6 | WARN 15 | SKIP 0 | PASS 204 ]   Error: Test failures   Execution halted
• checking PDF version of manual ... [9s/12s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR