* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘mets’ ...
** this is package ‘mets’ version ‘1.3.11’
** package ‘mets’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-16 (Debian 16.1.0-2) 16.1.0’
using Fortran compiler: ‘GNU Fortran (Debian 16.1.0-2) 16.1.0’
using C++ compiler: ‘g++-16 (Debian 16.1.0-2) 16.1.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz7TvvX/R.INSTALL3ff2c6409cf9aa/mets/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c aalenfrailty.cpp -o aalenfrailty.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c apply.cpp -o apply.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c binomial-twostage.cpp -o binomial-twostage.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c biprobit.cpp -o biprobit.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c claytonoakes.cpp -o claytonoakes.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c clusterindex.cpp -o clusterindex.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c cor.cpp -o cor.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c fastcox.cpp -o fastcox.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c mvn.cpp -o mvn.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c pch.cpp -o pch.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c prop-odd.cpp -o prop-odd.o
gcc-16 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randomF77.c -o randomF77.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c sim-tools.cpp -o sim-tools.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c survival-twostage.cpp -o survival-twostage.o
survival-twostage.cpp: In function ‘SEXPREC* twostageloglikeRV(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
survival-twostage.cpp:2076:57: warning: variable ‘sdj’ set but not used [-Wunused-but-set-variable=]
2076 | double dl1,dl2,ll1,ll2,ll=1,Li,Lk,diff=0,loglikecont=0,sdj=0;
| ^~~
survival-twostage.cpp: In function ‘SEXPREC* survivalloglikeRVpairs(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’:
survival-twostage.cpp:2761:21: warning: variable ‘thetak’ set but not used [-Wunused-but-set-variable=]
2761 | double llt=1,ssf=0,thetak=0;
| ^~~~~~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c tools.cpp -o tools.o
gfortran-16 -fpic -g -O2 -Wall -pedantic -mtune=native -c tvpack.f -o tvpack.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/mvtnorm/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -I../inst/include -DNDEBUG -DARMA_DONT_USE_OPENMP -DARMA_NO_DEBUG -DARMA_WARN_LEVEL=1 -DRCPP_NO_MODULES -DRCPP_NO_RTTI -fpic -g -O2 -Wall -pedantic -mtune=native -c weibull.cpp -o weibull.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o mets.so RcppExports.o aalenfrailty.o apply.o binomial-twostage.o biprobit.o claytonoakes.o clusterindex.o cor.o fastcox.o mvn.o pch.o prop-odd.o randomF77.o sim-tools.o survival-twostage.o tools.o tvpack.o weibull.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -lgfortran -lm -latomic_asneeded -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz7TvvX/R.INSTALL3ff2c6409cf9aa/mets/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpz7TvvX/R.INSTALL3ff2c6409cf9aa/mets/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpz7TvvX/R.INSTALL3ff2c6409cf9aa/mets/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-mets/00new/mets/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mets)