• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘metR/DESCRIPTION’ ... OK
• this is package ‘metR’ version ‘0.18.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘metR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/19s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] ERROR Running examples in ‘metR-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: EOF > ### Title: Empirical Orthogonal Function > ### Aliases: EOF > > ### ** Examples > > ## Don't show: > data.table::setDTthreads(1) > ## End(Don't show) > # The Antarctic Oscillation is computed from the > # monthly geopotential height anomalies weighted by latitude. > library(data.table) Attaching package: ‘data.table’ The following object is masked from ‘package:base’:     %notin% > data(geopotential) > geopotential <- copy(geopotential) > geopotential[, gh.t.w := Anomaly(gh)*sqrt(cos(lat*pi/180)), + by = .(lon, lat, month(date))] Error in `[.data.table`(geopotential, , `:=`(gh.t.w, Anomaly(gh) * sqrt(cos(lat * :   attempt access index 5/5 in VECTOR_ELT Calls: [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [29s/32s] ERROR   Running ‘testthat.R’ [29s/32s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(metR)   > # library(vdiffr)   >   > on_cran <- !isTRUE(as.logical(Sys.getenv("NOT_CRAN", "false")))   > if (on_cran) data.table::setDTthreads(2)   >   > test_check("metR")   Saving _problems/test-eof-6.R   Saving _problems/test-eof-11.R   Saving _problems/test-eof-18.R   Saving _problems/test-eof-31.R   Saving _problems/test-eof-36.R   Saving _problems/test-eof-44.R   Saving _problems/test-eof-60.R   Saving _problems/test-eof-65.R   Saving _problems/test-imputeeof-8.R   Saving _problems/test-interpolate-13.R   Saving _problems/test-season-31.R   Saving _problems/test-trajectory-4.R   Saving _problems/test-vis-geom-relief-14.R   Saving _problems/test-vis-text-contour-17.R   Saving _problems/test-vis-text-contour-74.R   Saving _problems/test-vis-text-contour-87.R   Saving _problems/test-waveflux-6.R   [ FAIL 17 | WARN 3 | SKIP 16 | PASS 159 ]      ══ Skipped tests (16) ══════════════════════════════════════════════════════════   • On CRAN (16): 'test-GetTopography.R:3:5', 'test-ReadNetCDF.R:81:5',     'test-vis-arrow.R:9:1', 'test-vis-arrow.R:31:1', 'test-vis-contour2.R:10:1',     'test-vis-contour2.R:24:1', 'test-vis-contour2.R:34:1',     'test-vis-contour2.R:52:1', 'test-vis-contour2.R:71:1',     'test-vis-contour_fill.R:11:1', 'test-vis-contour_fill.R:25:1',     'test-vis-contour_fill.R:36:1', 'test-vis-discretised-scale.R:12:1',     'test-vis-guide_colorstrip.R:13:1', 'test-vis-streamline.R:18:1',     'test-vis-streamline.R:27:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-eof.R:6:9'): EOF runs ──────────────────────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. ├─testthat::expect_s3_class(...) at test-eof.R:5:5    2. │ └─testthat::quasi_label(enquo(object))    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metR::EOF(gh ~ lat + lon | date, data = geopotential, n = 1) at test-eof.R:6:9    5. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    6. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    7. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-eof.R:11:5'): EOF, returns correct PCs ─────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-eof.R:11:5    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. ├─base::nrow(EOF(gh ~ lat + lon | date, data = geopotential, n = 2)$sdev)    5. └─metR::EOF(gh ~ lat + lon | date, data = geopotential, n = 2)    6. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    7. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    8. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-eof.R:18:9'): EOF uses bootstrap ───────────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. ├─testthat::expect_s3_class(...) at test-eof.R:16:5    2. │ └─testthat::quasi_label(enquo(object))    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metR::EOF(...) at test-eof.R:18:9    5. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    6. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    7. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-eof.R:28:5'): can use differnet engine ─────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-eof.R:28:5    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metR::EOF(gh ~ lat + lon | date, data = geopotential, engine = base::svd)    5. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    6. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    7. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-eof.R:35:5'): EOF works inside data.table ──────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_equal(...) at test-eof.R:35:5     2. │ └─testthat::quasi_label(enquo(object), label)     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─geopotential[, EOF(gh ~ lon + lat | date)$left]     5. └─data.table:::`[.data.table`(...)     6. └─base::eval(jsub, SDenv, parent.frame())     7. └─base::eval(jsub, SDenv, parent.frame())     8. └─metR::EOF(gh ~ lon + lat | date)     9. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    10. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    11. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-eof.R:41:5'): EOF rotates ──────────────────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. ├─testthat::expect_identical(...) at test-eof.R:41:5    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metR::EOF(...)    5. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    6. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    7. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Failure ('test-eof.R:59:5'): EOF fails gracefully ───────────────────────────   `EOF(gh ~ lon | date, data = geopotential)` threw an error with unexpected message.   Expected match: "The formula gh ~ lon | date does not identify an unique observation for each cell."   Actual message: "attempt access index 3/3 in VECTOR_ELT"   Backtrace:       ▆    1. ├─testthat::expect_error(...) at test-eof.R:59:5    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─metR::EOF(gh ~ lon | date, data = geopotential)    7. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    8. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    9. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-eof.R:64:5'): eof methods ──────────────────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 4/4 in VECTOR_ELT   Backtrace:       ▆    1. └─metR::EOF(...) at test-eof.R:64:5    2. └─metR:::.tidy2matrix(data, dcast.formula, value.var, fill = fill)    3. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    4. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-imputeeof.R:8:1'): (code run outside of `test_that()`) ─────────   Error in ``[.data.table`(geopotential, , `:=`(gh.t, Anomaly(gh)), by = .(lat, lon, month(date)))`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. ├─geopotential[, `:=`(gh.t, Anomaly(gh)), by = .(lat, lon, month(date))] at test-imputeeof.R:8:1    2. └─data.table:::`[.data.table`(...) at test-imputeeof.R:8:1   ── Error ('test-interpolate.R:13:5'): interpolate works ────────────────────────   Error in ``[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))`: attempt access index 3/3 in VECTOR_ELT   Backtrace:        ▆     1. ├─testthat::expect_known_value(...) at test-interpolate.R:13:5     2. │ └─testthat::quasi_label(enquo(object), label)     3. │ └─rlang::eval_bare(expr, quo_get_env(quo))     4. ├─geopotential[, Interpolate(gh ~ lon + lat, x.out, y.out)]     5. └─data.table:::`[.data.table`(...)     6. └─base::eval(jsub, SDenv, parent.frame())     7. └─base::eval(jsub, SDenv, parent.frame())     8. └─metR::Interpolate(gh ~ lon + lat, x.out, y.out)     9. └─metR:::.tidy2matrix(data, dcast.formula, value.var = value.var)    10. ├─data[, `:=`(row__, .GRP), by = c(row.vars)]    11. └─data.table:::`[.data.table`(data, , `:=`(row__, .GRP), by = c(row.vars))   ── Error ('test-season.R:29:5'): full season works ─────────────────────────────   Error in ``[.data.table`(data.table::data.table(times, year, season), , `:=`(n, .N), by = .(year, season))`: attempt access index 3/3 in VECTOR_ELT   Backtrace:       ▆    1. ├─testthat::expect_equal(...) at test-season.R:29:5    2. │ └─testthat::quasi_label(enquo(object), label)    3. │ └─rlang::eval_bare(expr, quo_get_env(quo))    4. └─metR::is.full_season(...)    5. ├─...[]    6. └─data.table:::`[.data.table`(...)   ── Error ('test-trajectory.R:4:1'): (code run outside of `test_that()`) ────────   Error in ``[.data.table`(geopotential, , `:=`(c("u", "v"), GeostrophicWind(gh, lon, lat)), by = date)`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. ├─...[] at test-trajectory.R:4:1    2. └─data.table:::`[.data.table`(...) at test-trajectory.R:4:1   ── Error ('test-vis-geom-relief.R:11:5'): geom-relief ──────────────────────────   Error in `geom_relief(aes(z = value))`: Problem while converting geom to grob.   ℹ Error occurred in the 1st layer.   Caused by error in `[.data.table`:   ! attempt access index 16/16 in VECTOR_ELT   Backtrace:        ▆     1. ├─vdiffr::expect_doppelganger(...) at test-vis-geom-relief.R:11:5     2. │ └─vdiffr (local) writer(fig, testcase, title)     3. │ ├─vdiffr:::print_plot(plot, title)     4. │ └─vdiffr:::print_plot.ggplot(plot, title)     5. │ ├─base::print(p)     6. │ └─ggplot2 (local) `print.ggplot2::ggplot`(p)     7. │ ├─ggplot2::ggplot_gtable(data)     8. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)     9. │ └─ggplot2:::by_layer(...)    10. │ ├─rlang::try_fetch(...)    11. │ │ ├─base::tryCatch(...)    12. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    13. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    14. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    15. │ │ └─base::withCallingHandlers(...)    16. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])    17. │ └─l$draw_geom(d, layout)    18. │ └─ggplot2 (local) draw_geom(..., self = self)    19. │ └─self$geom$draw_layer(...)    20. │ └─ggplot2 (local) draw_layer(..., self = self)    21. │ └─base::lapply(...)    22. │ └─ggplot2 (local) FUN(X[[i]], ...)    23. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))    24. │ └─self$draw_panel(...)    25. │ └─metR (local) draw_panel(...)    26. │ ├─coords[, `:=`(dx, .derv(z, x, fill = TRUE)), by = y]    27. │ └─data.table:::`[.data.table`(...)    28. └─base::.handleSimpleError(...)    29. └─rlang (local) h(simpleError(msg, call))    30. └─handlers[[1L]](cnd)    31. └─cli::cli_abort(...)    32. └─rlang::abort(...)   ── Error ('test-vis-text-contour.R:13:5'): contour_text wokrs ──────────────────   Error in `geom_text_contour(aes(z = gh))`: Problem while converting geom to grob.   ℹ Error occurred in the 2nd layer.   Caused by error in `[.data.table`:   ! attempt access index 18/18 in VECTOR_ELT   Backtrace:        ▆     1. ├─vdiffr::expect_doppelganger(...) at test-vis-text-contour.R:13:5     2. │ └─vdiffr (local) writer(fig, testcase, title)     3. │ ├─vdiffr:::print_plot(plot, title)     4. │ └─vdiffr:::print_plot.ggplot(plot, title)     5. │ ├─base::print(p)     6. │ └─ggplot2 (local) `print.ggplot2::ggplot`(p)     7. │ ├─ggplot2::ggplot_gtable(data)     8. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)     9. │ └─ggplot2:::by_layer(...)    10. │ ├─rlang::try_fetch(...)    11. │ │ ├─base::tryCatch(...)    12. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    13. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    14. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    15. │ │ └─base::withCallingHandlers(...)    16. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])    17. │ └─l$draw_geom(d, layout)    18. │ └─ggplot2 (local) draw_geom(..., self = self)    19. │ └─self$geom$draw_layer(...)    20. │ └─ggplot2 (local) draw_layer(..., self = self)    21. │ └─base::lapply(...)    22. │ └─ggplot2 (local) FUN(X[[i]], ...)    23. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))    24. │ └─self$draw_panel(...)    25. │ └─metR (local) draw_panel(...)    26. │ ├─data[, `:=`(N, .N), by = .(group, piece)]    27. │ └─data.table:::`[.data.table`(...)    28. └─base::.handleSimpleError(...)    29. └─rlang (local) h(simpleError(msg, call))    30. └─handlers[[1L]](cnd)    31. └─cli::cli_abort(...)    32. └─rlang::abort(...)   ── Error ('test-vis-text-contour.R:69:5'): stroke.colour is aesthetic ──────────   Error in `geom_text_contour(aes(z = gh, stroke.colour = after_stat(level)), stroke = 0.2)`: Problem while converting geom to grob.   ℹ Error occurred in the 2nd layer.   Caused by error in `[.data.table`:   ! attempt access index 18/18 in VECTOR_ELT   Backtrace:        ▆     1. ├─vdiffr::expect_doppelganger(...) at test-vis-text-contour.R:69:5     2. │ └─vdiffr (local) writer(fig, testcase, title)     3. │ ├─vdiffr:::print_plot(plot, title)     4. │ └─vdiffr:::print_plot.ggplot(plot, title)     5. │ ├─base::print(p)     6. │ └─ggplot2 (local) `print.ggplot2::ggplot`(p)     7. │ ├─ggplot2::ggplot_gtable(data)     8. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)     9. │ └─ggplot2:::by_layer(...)    10. │ ├─rlang::try_fetch(...)    11. │ │ ├─base::tryCatch(...)    12. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    13. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    14. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    15. │ │ └─base::withCallingHandlers(...)    16. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])    17. │ └─l$draw_geom(d, layout)    18. │ └─ggplot2 (local) draw_geom(..., self = self)    19. │ └─self$geom$draw_layer(...)    20. │ └─ggplot2 (local) draw_layer(..., self = self)    21. │ └─base::lapply(...)    22. │ └─ggplot2 (local) FUN(X[[i]], ...)    23. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))    24. │ └─self$draw_panel(...)    25. │ └─metR (local) draw_panel(...)    26. │ ├─data[, `:=`(N, .N), by = .(group, piece)]    27. │ └─data.table:::`[.data.table`(...)    28. └─base::.handleSimpleError(...)    29. └─rlang (local) h(simpleError(msg, call))    30. └─handlers[[1L]](cnd)    31. └─cli::cli_abort(...)    32. └─rlang::abort(...)   ── Error ('test-vis-text-contour.R:80:5'): geom_label_contour also work ────────   Error in `geom_label_contour(aes(z = gh, fill = after_stat(level)), label.r = unit(0.25, "lines"), label.padding = unit(0.15, "lines"), label.size = 0)`: Problem while converting geom to grob.   ℹ Error occurred in the 2nd layer.   Caused by error in `[.data.table`:   ! attempt access index 18/18 in VECTOR_ELT   Backtrace:        ▆     1. ├─vdiffr::expect_doppelganger(...) at test-vis-text-contour.R:80:5     2. │ └─vdiffr (local) writer(fig, testcase, title)     3. │ ├─vdiffr:::print_plot(plot, title)     4. │ └─vdiffr:::print_plot.ggplot(plot, title)     5. │ ├─base::print(p)     6. │ └─ggplot2 (local) `print.ggplot2::ggplot`(p)     7. │ ├─ggplot2::ggplot_gtable(data)     8. │ └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)     9. │ └─ggplot2:::by_layer(...)    10. │ ├─rlang::try_fetch(...)    11. │ │ ├─base::tryCatch(...)    12. │ │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)    13. │ │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])    14. │ │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)    15. │ │ └─base::withCallingHandlers(...)    16. │ └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])    17. │ └─l$draw_geom(d, layout)    18. │ └─ggplot2 (local) draw_geom(..., self = self)    19. │ └─self$geom$draw_layer(...)    20. │ └─ggplot2 (local) draw_layer(..., self = self)    21. │ └─base::lapply(...)    22. │ └─ggplot2 (local) FUN(X[[i]], ...)    23. │ ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))    24. │ └─self$draw_panel(...)    25. │ └─metR (local) draw_panel(..., self = self)    26. │ ├─data[, `:=`(N, .N), by = .(group, piece)]    27. │ └─data.table:::`[.data.table`(...)    28. └─base::.handleSimpleError(...)    29. └─rlang (local) h(simpleError(msg, call))    30. └─handlers[[1L]](cnd)    31. └─cli::cli_abort(...)    32. └─rlang::abort(...)   ── Error ('test-waveflux.R:6:5'): waveflux returns w.x and w.y ─────────────────   Error in ``[.data.table`(dt, , `:=`(psi.dx = Derivate(psi ~ lonrad, cyclical = TRUE)[[1]], psi.dxx = Derivate(psi ~ lonrad, 2, cyclical = TRUE)[[1]]), by = lat)`: attempt access index 9/9 in VECTOR_ELT   Backtrace:       ▆    1. ├─base::with(geo, WaveFlux(gh, u, v, lon, lat, lev = 700)) at test-waveflux.R:6:5    2. └─base::with.default(geo, WaveFlux(gh, u, v, lon, lat, lev = 700))    3. └─base::eval(substitute(expr), data, enclos = parent.frame())    4. └─base::eval(substitute(expr), data, enclos = parent.frame())    5. └─metR::WaveFlux(gh, u, v, lon, lat, lev = 700)    6. ├─...[]    7. └─data.table:::`[.data.table`(...)      [ FAIL 17 | WARN 3 | SKIP 16 | PASS 159 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/10s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘Visualization-tools.Rmd’ using knitr Quitting from Visualization-tools.Rmd:25-32 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace:     ▆  1. ├─temperature[, `:=`(air.z, Anomaly(air)), by = .(lat, lev)]  2. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Visualization-tools.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building ‘Visualization-tools.Rmd’ --- re-building ‘Working-with-data.Rmd’ using knitr Quitting from Working-with-data.Rmd:117-124 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 5/5 in VECTOR_ELT --- Backtrace:     ▆  1. ├─...[]  2. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Working-with-data.Rmd' failed with diagnostics: attempt access index 5/5 in VECTOR_ELT --- failed re-building ‘Working-with-data.Rmd’ SUMMARY: processing the following files failed:   ‘Visualization-tools.Rmd’ ‘Working-with-data.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/10s] OK
• checking HTML version of manual ... [6s/7s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs