Install log for 'mcmcse'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘mcmcse’ ...
** this is package ‘mcmcse’ version ‘1.5-1’
** package ‘mcmcse’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-15 (Debian 15.2.0-9) 15.2.0’
using C++ compiler: ‘g++-15 (Debian 15.2.0-9) 15.2.0’
make[1]: Entering directory '/tmp/RtmpzJOC9F/R.INSTALL34dfbb58069daa/mcmcse/src'
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c batchsize.cpp -o batchsize.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from batchsize.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
gcc-15 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c inseq.cpp -o inseq.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from inseq.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c lag.cpp -o lag.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from lag.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mbmc.cpp -o mbmc.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from mbmc.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcseqbm.cpp -o mcseqbm.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from mcseqbm.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcseqobm.cpp -o mcseqobm.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from mcseqobm.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mcseqsub.cpp -o mcseqsub.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from mcseqsub.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mobmc.cpp -o mobmc.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from mobmc.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c msvec.cpp -o msvec.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:75,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:32,
                 from msvec.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: ‘#warning’ before C++23 is a GCC extension [-Wc++23-extensions]
   32 | #warning include R_ext/ObjectTable.h for R_ObjectTable declarations
      |  ^~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include/R_ext/Callbacks.h:32:2: warning: #warning include R_ext/ObjectTable.h for R_ObjectTable declarations [-Wcpp]
g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o mcmcse.so RcppExports.o batchsize.o init.o inseq.o lag.o mbmc.o mcseqbm.o mcseqobm.o mcseqsub.o mobmc.o msvec.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpzJOC9F/R.INSTALL34dfbb58069daa/mcmcse/src'
make[1]: Entering directory '/tmp/RtmpzJOC9F/R.INSTALL34dfbb58069daa/mcmcse/src'
make[1]: Leaving directory '/tmp/RtmpzJOC9F/R.INSTALL34dfbb58069daa/mcmcse/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-mcmcse/00new/mcmcse/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mcmcse)