* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘matrixStats’ ... ** package ‘matrixStats’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/tmp/RtmppJKd1w/R.INSTALL64d813c1af2db/matrixStats/src' gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c 000.init.c -o 000.init.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c allocMatrix2.c -o allocMatrix2.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c anyMissing.c -o anyMissing.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binCounts.c -o binCounts.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c binMeans.c -o binMeans.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colCounts.c -o colCounts.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colOrderStats.c -o colOrderStats.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c colRanges.c -o colRanges.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c diff2.c -o diff2.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c indexByRow.c -o indexByRow.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c logSumExp.c -o logSumExp.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mean2.c -o mean2.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c naming.c -o naming.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c productExpSumLog.c -o productExpSumLog.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c psortKM.c -o psortKM.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCounts.c -o rowCounts.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCummaxs.c -o rowCummaxs.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCummins.c -o rowCummins.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCumprods.c -o rowCumprods.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowCumsums.c -o rowCumsums.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowDiffs.c -o rowDiffs.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowLogSumExp.c -o rowLogSumExp.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMads.c -o rowMads.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMeans2.c -o rowMeans2.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowMedians.c -o rowMedians.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowOrderStats.c -o rowOrderStats.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowRanges.c -o rowRanges.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowRanksWithTies.c -o rowRanksWithTies.o In file included from rowRanksWithTies_lowlevel.h:23, from rowRanksWithTies.c:10: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Average_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ In file included from rowRanksWithTies_lowlevel.h:40: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_First_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ In file included from rowRanksWithTies_lowlevel.h:57: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Last_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ In file included from rowRanksWithTies_lowlevel.h:91: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Min_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ In file included from rowRanksWithTies_lowlevel.h:108: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Max_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ In file included from rowRanksWithTies_lowlevel.h:125: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Dense_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ In file included from rowRanksWithTies_lowlevel.h:74: rowRanksWithTies_lowlevel_template.h: In function ‘rowRanksWithTies_Random_dbl’: rowRanksWithTies_lowlevel_template.h:169:22: warning: ‘lastFinite_val’ may be used uninitialized [-Wmaybe-uninitialized] 169 | values[ jj ] = lastFinite_val; | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ rowRanksWithTies_lowlevel_template.h:150:18: note: ‘lastFinite_val’ was declared here 150 | X_C_TYPE lastFinite_val; | ^~~~~~~~~~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowSums2.c -o rowSums2.o In file included from rowSums2_lowlevel.h:14, from rowSums2.c:12: rowSums2_lowlevel_template.h: In function ‘rowSums2_int’: rowSums2_lowlevel_template.h:96:24: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized] 96 | rowSum[ii] = R_NaReal; | ~~~~~~~~~~~^~~~~~~~~~ rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here 35 | LDOUBLE *rowSum; | ^~~~~~ In file included from rowSums2_lowlevel.h:18: rowSums2_lowlevel_template.h: In function ‘rowSums2_dbl’: rowSums2_lowlevel_template.h:114:24: warning: ‘rowSum’ may be used uninitialized [-Wmaybe-uninitialized] 114 | rowSum[ii] += (LDOUBLE)value; | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~ rowSums2_lowlevel_template.h:35:14: note: ‘rowSum’ was declared here 35 | LDOUBLE *rowSum; | ^~~~~~ gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rowVars.c -o rowVars.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c signTabulate.c -o signTabulate.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c sum2.c -o sum2.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c validateIndices.c -o validateIndices.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedMean.c -o weightedMean.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c weightedMedian.c -o weightedMedian.o gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c x_OP_y.c -o x_OP_y.o gcc-14 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o naming.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/RtmppJKd1w/R.INSTALL64d813c1af2db/matrixStats/src' make[1]: Entering directory '/tmp/RtmppJKd1w/R.INSTALL64d813c1af2db/matrixStats/src' make[1]: Leaving directory '/tmp/RtmppJKd1w/R.INSTALL64d813c1af2db/matrixStats/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-matrixStats/00new/matrixStats/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixStats)