* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’ * installing *source* package ‘matrixCorr’ ... ** this is package ‘matrixCorr’ version ‘0.5.1’ ** package ‘matrixCorr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-4) 15.2.0’ make[1]: Entering directory '/tmp/Rtmpxi5YHf/R.INSTALL30d99f7e15fd3a/matrixCorr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c biweight_mid_corr.cpp -o biweight_mid_corr.o In file included from biweight_mid_corr.cpp:14: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bland_altman.cpp -o bland_altman.o In file included from bland_altman.cpp:9: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bland_altman_repeated.cpp -o bland_altman_repeated.o In file included from bland_altman_repeated.cpp:13: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ccc_repeated.cpp -o ccc_repeated.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ccc_repeated_helper.cpp -o ccc_repeated_helper.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ccc_repeated_mixed_model.cpp -o ccc_repeated_mixed_model.o In file included from ccc_repeated_mixed_model.cpp:17: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ ccc_repeated_mixed_model.cpp: In function ‘Rcpp::List ccc_vc_cpp(Rcpp::NumericMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::IntegerVector, Rcpp::IntegerVector, int, int, int, double, double, int, Rcpp::Nullable<Rcpp::Matrix<14> >, Rcpp::Nullable<Rcpp::Matrix<14> >, Rcpp::Nullable<Rcpp::Matrix<14> >, bool, double, bool, bool, double, bool, Rcpp::Nullable<Rcpp::Vector<14, Rcpp::PreserveStorage> >)’: ccc_repeated_mixed_model.cpp:947:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 947 | for (size_t k = 0; k < tim_i.size(); ++k) | ^~~ ccc_repeated_mixed_model.cpp:950:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 950 | auto kp = unit_kappas(times_obs); | ^~~~ ccc_repeated_mixed_model.cpp:959:11: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 959 | for (size_t k = 0; k < tim_i.size(); ++k) | ^~~ ccc_repeated_mixed_model.cpp:962:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 962 | auto kp = unit_kappas(times_obs); | ^~~~ ccc_repeated_mixed_model.cpp:1263:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1263 | for (int k = 0; k < n_i; ++k) | ^~~ ccc_repeated_mixed_model.cpp:1265:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1265 | if ((int)idx.size() <= 1) continue; | ^~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c concordance_corr.cpp -o concordance_corr.o In file included from concordance_corr.cpp:4: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ concordance_corr.cpp: In function ‘arma::mat ccc_cpp(const arma::mat&)’: concordance_corr.cpp:23:13: warning: unused variable ‘n’ [-Wunused-variable] 23 | const int n = X.n_rows; | ^ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c distance_correlation.cpp -o distance_correlation.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c kendall_corr.cpp -o kendall_corr.o In file included from kendall_corr.cpp:8: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c partial_correlation.cpp -o partial_correlation.o In file included from partial_correlation.cpp:8: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c pearson.cpp -o pearson.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c schafer_strimmer_shrinkage_correlation.cpp -o schafer_strimmer_shrinkage_correlation.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spearman.cpp -o spearman.o In file included from spearman.cpp:4: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tetrachoric.cpp -o tetrachoric.o In file included from tetrachoric.cpp:10: matrixCorr_detail.h: In function ‘void matrixCorr_detail::timeseries::ar1::make_Cinv_by_method(const std::vector<int, std::allocator<int> >&, const std::vector<int, std::allocator<int> >&, int, double, arma::mat&)’: matrixCorr_detail.h:1175:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1175 | for (int k = 0; k < (int)tim_ord.size(); ++k) | ^~~ matrixCorr_detail.h:1179:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 1179 | int s = 0; | ^~~ tetrachoric.cpp: In function ‘void build_cutpoints(const Rcpp::NumericMatrix&, std::vector<double>&, std::vector<double>&)’: tetrachoric.cpp:64:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 64 | for (int i=0;i<R;++i) | ^~~ tetrachoric.cpp:70:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 70 | if (tot <= 0) stop("Empty table"); | ^~ tetrachoric.cpp: In function ‘double matrixCorr_polychoric_mle_cpp(Rcpp::NumericMatrix, double)’: tetrachoric.cpp:177:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 177 | for (int j=0;j<C;++j) | ^~~ tetrachoric.cpp:180:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’ 180 | std::vector<double> alpha, beta; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/cpp11/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c validate_corr_input.cpp -o validate_corr_input.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o matrixCorr.so RcppExports.o biweight_mid_corr.o bland_altman.o bland_altman_repeated.o ccc_repeated.o ccc_repeated_helper.o ccc_repeated_mixed_model.o concordance_corr.o distance_correlation.o kendall_corr.o partial_correlation.o pearson.o schafer_strimmer_shrinkage_correlation.o spearman.o tetrachoric.o validate_corr_input.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR make[1]: Leaving directory '/tmp/Rtmpxi5YHf/R.INSTALL30d99f7e15fd3a/matrixCorr/src' make[1]: Entering directory '/tmp/Rtmpxi5YHf/R.INSTALL30d99f7e15fd3a/matrixCorr/src' make[1]: Leaving directory '/tmp/Rtmpxi5YHf/R.INSTALL30d99f7e15fd3a/matrixCorr/src' installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-matrixCorr/00new/matrixCorr/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (matrixCorr)