• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:58:23 UTC
• checking for file ‘mappoly/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mappoly’ version ‘0.4.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/4s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mappoly’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-16 (Debian 16.1.0-3) 16.1.0’
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/5s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the package can be unloaded cleanly ... [4s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/5s] OK
• checking loading without being on the library search path ... [4s/5s] OK
• checking whether startup messages can be suppressed ... [5s/6s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [41s/56s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [2s/2s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... INFO GNU make is a SystemRequirements.
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [32s/37s] OK Examples with CPU (user + system) or elapsed time > 5s                              user system elapsed calc_genoprob_single_parent 3.945 0.111 5.191
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/2s] OK
• checking PDF version of manual ... [8s/11s] OK
• checking HTML version of manual ... [3s/4s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp1B6VLn’ ‘~/tmp/scratch/Rtmp1IeSJ4’   ‘~/tmp/scratch/Rtmp28wRKL’ ‘~/tmp/scratch/Rtmp2Ozqo0’   ‘~/tmp/scratch/Rtmp2vTGIN’ ‘~/tmp/scratch/Rtmp3MGDqh’   ‘~/tmp/scratch/Rtmp440OQU’ ‘~/tmp/scratch/Rtmp4SUHgX’   ‘~/tmp/scratch/Rtmp4WC70c’ ‘~/tmp/scratch/Rtmp4daBWf’   ‘~/tmp/scratch/Rtmp5I6IXO’ ‘~/tmp/scratch/Rtmp5ZtO3O’   ‘~/tmp/scratch/Rtmp5dwrGA’ ‘~/tmp/scratch/Rtmp5hVfw0’   ‘~/tmp/scratch/Rtmp6AEJ0h’ ‘~/tmp/scratch/Rtmp6D4SRq’   ‘~/tmp/scratch/Rtmp6xKJJL’ ‘~/tmp/scratch/Rtmp788XBe’   ‘~/tmp/scratch/Rtmp7cLQEq’ ‘~/tmp/scratch/Rtmp8FAQtt’   ‘~/tmp/scratch/Rtmp8aDqoV’ ‘~/tmp/scratch/Rtmp8e7Qzt’   ‘~/tmp/scratch/Rtmp9GmhNy’ ‘~/tmp/scratch/RtmpAXRHvS’   ‘~/tmp/scratch/RtmpAprB8Q’ ‘~/tmp/scratch/RtmpB9RBcz’   ‘~/tmp/scratch/RtmpBZ9RKk’ ‘~/tmp/scratch/RtmpBsV11w’   ‘~/tmp/scratch/RtmpC5L7RP’ ‘~/tmp/scratch/RtmpCMe7ZP’   ‘~/tmp/scratch/RtmpChsFFv’ ‘~/tmp/scratch/RtmpCvIyki’   ‘~/tmp/scratch/RtmpCyKawZ’ ‘~/tmp/scratch/RtmpDH5s1o’   ‘~/tmp/scratch/RtmpDPsIgP’ ‘~/tmp/scratch/RtmpDaJOnC’   ‘~/tmp/scratch/RtmpDocTiU’ ‘~/tmp/scratch/RtmpEjyFij’   ‘~/tmp/scratch/RtmpF2xJAd’ ‘~/tmp/scratch/RtmpFD4eSg’   ‘~/tmp/scratch/RtmpFGSTsy’ ‘~/tmp/scratch/RtmpFYJmgW’   ‘~/tmp/scratch/RtmpFfSME6’ ‘~/tmp/scratch/RtmpFvLqLe’   ‘~/tmp/scratch/RtmpGnew7v’ ‘~/tmp/scratch/RtmpGsYEYo’   ‘~/tmp/scratch/RtmpGxzdrx’ ‘~/tmp/scratch/RtmpHlvi4t’   ‘~/tmp/scratch/RtmpIMXx9j’ ‘~/tmp/scratch/RtmpJLgE4E’   ‘~/tmp/scratch/RtmpJM4IGv’ ‘~/tmp/scratch/RtmpJMTGwf’   ‘~/tmp/scratch/RtmpJe3hMc’ ‘~/tmp/scratch/RtmpJugmT0’   ‘~/tmp/scratch/RtmpJxc9rs’ ‘~/tmp/scratch/RtmpLPTehG’   ‘~/tmp/scratch/RtmpMasLpM’ ‘~/tmp/scratch/RtmpMtQCEn’   ‘~/tmp/scratch/RtmpN0Gzdw’ ‘~/tmp/scratch/RtmpND1Cau’   ‘~/tmp/scratch/RtmpNWhmbL’ ‘~/tmp/scratch/RtmpNmU30b’   ‘~/tmp/scratch/RtmpODjE7G’ ‘~/tmp/scratch/RtmpOHjCKO’   ‘~/tmp/scratch/RtmpOM2Lji’ ‘~/tmp/scratch/RtmpOd4889’   ‘~/tmp/scratch/RtmpOyq4vg’ ‘~/tmp/scratch/RtmpP04GTb’   ‘~/tmp/scratch/RtmpPd9skA’ ‘~/tmp/scratch/RtmpPeFSdr’   ‘~/tmp/scratch/RtmpPnlAa3’ ‘~/tmp/scratch/RtmpQGp8F6’   ‘~/tmp/scratch/RtmpQZo4CX’ ‘~/tmp/scratch/RtmpR6DL9G’   ‘~/tmp/scratch/RtmpRHiszZ’ ‘~/tmp/scratch/RtmpRVZtYk’   ‘~/tmp/scratch/RtmpSgmNCU’ ‘~/tmp/scratch/RtmpT6J6sY’   ‘~/tmp/scratch/RtmpTW1EyK’ ‘~/tmp/scratch/RtmpTvPpGe’   ‘~/tmp/scratch/RtmpTzT2kq’ ‘~/tmp/scratch/RtmpU6FOoR’   ‘~/tmp/scratch/RtmpUnQ4SG’ ‘~/tmp/scratch/RtmpUprMFm’   ‘~/tmp/scratch/RtmpV1eYpz’ ‘~/tmp/scratch/RtmpVSgqlG’   ‘~/tmp/scratch/RtmpVhAWQF’ ‘~/tmp/scratch/RtmpWKFp54’   ‘~/tmp/scratch/RtmpWRoZfe’ ‘~/tmp/scratch/RtmpWuVSzt’   ‘~/tmp/scratch/RtmpWxTtjQ’ ‘~/tmp/scratch/RtmpXBcrV9’   ‘~/tmp/scratch/RtmpXITvtP’ ‘~/tmp/scratch/RtmpXNoQG0’   ‘~/tmp/scratch/RtmpXUBIoN’ ‘~/tmp/scratch/RtmpXh7Kxv’   ‘~/tmp/scratch/RtmpXrQf5c’ ‘~/tmp/scratch/RtmpXrU2NF’   ‘~/tmp/scratch/RtmpXyOoAd’ ‘~/tmp/scratch/RtmpY2G5iG’   ‘~/tmp/scratch/RtmpY6McCJ’ ‘~/tmp/scratch/RtmpY8Q7YD’   ‘~/tmp/scratch/RtmpY9eQ9k’ ‘~/tmp/scratch/RtmpZ5s7iS’   ‘~/tmp/scratch/RtmpZEFQBn’ ‘~/tmp/scratch/RtmpZsf6Fz’   ‘~/tmp/scratch/Rtmpa7qCue’ ‘~/tmp/scratch/RtmpaFrX7w’   ‘~/tmp/scratch/RtmpawRDp5’ ‘~/tmp/scratch/RtmpbJ4mja’   ‘~/tmp/scratch/RtmpbjTOWt’ ‘~/tmp/scratch/Rtmpbkhbf4’   ‘~/tmp/scratch/RtmpcPBfx3’ ‘~/tmp/scratch/Rtmpd2W9mS’   ‘~/tmp/scratch/RtmpdLBpWY’ ‘~/tmp/scratch/RtmpdSZl3o’   ‘~/tmp/scratch/Rtmpe8NGip’ ‘~/tmp/scratch/RtmpeD5HB2’   ‘~/tmp/scratch/RtmpeYd9Dl’ ‘~/tmp/scratch/RtmpebFUvo’   ‘~/tmp/scratch/RtmpfdR3gi’ ‘~/tmp/scratch/Rtmpfs4uyC’   ‘~/tmp/scratch/RtmpfyD2aG’ ‘~/tmp/scratch/RtmpgSRFC8’   ‘~/tmp/scratch/RtmpgmbRZ2’ ‘~/tmp/scratch/RtmpgwZgNp’   ‘~/tmp/scratch/RtmphMOcqq’ ‘~/tmp/scratch/RtmphMStZ5’   ‘~/tmp/scratch/RtmphMrN2u’ ‘~/tmp/scratch/RtmphcuuAR’   ‘~/tmp/scratch/Rtmpi0K6IK’ ‘~/tmp/scratch/RtmpiqeG5k’   ‘~/tmp/scratch/RtmpjA21k2’ ‘~/tmp/scratch/RtmpjIL6Gx’   ‘~/tmp/scratch/RtmpkLq1D4’ ‘~/tmp/scratch/Rtmpknii12’   ‘~/tmp/scratch/RtmpktqtCU’ ‘~/tmp/scratch/RtmplImIco’   ‘~/tmp/scratch/RtmplZ8PFq’ ‘~/tmp/scratch/RtmplbGAJB’   ‘~/tmp/scratch/Rtmplns5Jd’ ‘~/tmp/scratch/Rtmpls62z2’   ‘~/tmp/scratch/RtmpmAZkxb’ ‘~/tmp/scratch/RtmpnZHdEM’   ‘~/tmp/scratch/Rtmpnsu3Hp’ ‘~/tmp/scratch/Rtmpnuwitk’   ‘~/tmp/scratch/RtmpoViup9’ ‘~/tmp/scratch/RtmpoakMyN’   ‘~/tmp/scratch/Rtmpobw3Lk’ ‘~/tmp/scratch/RtmpogkDDo’   ‘~/tmp/scratch/Rtmpp4HP7X’ ‘~/tmp/scratch/RtmppEKwca’   ‘~/tmp/scratch/RtmppUysvF’ ‘~/tmp/scratch/RtmppXxJ97’   ‘~/tmp/scratch/Rtmpq0Qrox’ ‘~/tmp/scratch/RtmpqIBnpZ’   ‘~/tmp/scratch/RtmpqaLP4S’ ‘~/tmp/scratch/RtmpqfC1CU’   ‘~/tmp/scratch/RtmpqmMZl7’ ‘~/tmp/scratch/RtmprSagJo’   ‘~/tmp/scratch/RtmprdCoBu’ ‘~/tmp/scratch/Rtmpri3YZD’   ‘~/tmp/scratch/RtmpsBam51’ ‘~/tmp/scratch/RtmpsekKzN’   ‘~/tmp/scratch/RtmptTaQ6S’ ‘~/tmp/scratch/Rtmpu2IiOx’   ‘~/tmp/scratch/RtmpuCXqWd’ ‘~/tmp/scratch/RtmpuPXbJS’   ‘~/tmp/scratch/RtmpuwONjl’ ‘~/tmp/scratch/RtmpvBgqQg’   ‘~/tmp/scratch/RtmpvMPZhK’ ‘~/tmp/scratch/Rtmpvt3k44’   ‘~/tmp/scratch/RtmpvyyE8m’ ‘~/tmp/scratch/Rtmpw3txW1’   ‘~/tmp/scratch/RtmpwwJB2g’ ‘~/tmp/scratch/RtmpwyG8pY’   ‘~/tmp/scratch/RtmpxW8UjN’ ‘~/tmp/scratch/Rtmpy1WewG’   ‘~/tmp/scratch/Rtmpytmo1k’ ‘~/tmp/scratch/Rtmpzt8hyc’   ‘~/tmp/scratch/RtmpzxCTOG’ ‘~/tmp/scratch/xvfb-run.1TDHV6’   ‘~/tmp/scratch/xvfb-run.1gMdC5’ ‘~/tmp/scratch/xvfb-run.1vx5Gl’   ‘~/tmp/scratch/xvfb-run.2CrBW7’ ‘~/tmp/scratch/xvfb-run.2SdgwK’   ‘~/tmp/scratch/xvfb-run.459D6X’ ‘~/tmp/scratch/xvfb-run.4kuO2H’   ‘~/tmp/scratch/xvfb-run.5Tb43N’ ‘~/tmp/scratch/xvfb-run.5nkKUb’   ‘~/tmp/scratch/xvfb-run.83A8jq’ ‘~/tmp/scratch/xvfb-run.9dLYPq’   ‘~/tmp/scratch/xvfb-run.BMlngA’ ‘~/tmp/scratch/xvfb-run.D3o37H’   ‘~/tmp/scratch/xvfb-run.D4DRmy’ ‘~/tmp/scratch/xvfb-run.GNLfyr’   ‘~/tmp/scratch/xvfb-run.GvQ3Xv’ ‘~/tmp/scratch/xvfb-run.GxlBNs’   ‘~/tmp/scratch/xvfb-run.Hupil9’ ‘~/tmp/scratch/xvfb-run.I6TNQc’   ‘~/tmp/scratch/xvfb-run.LBoVdj’ ‘~/tmp/scratch/xvfb-run.LGGl05’   ‘~/tmp/scratch/xvfb-run.LalNLP’ ‘~/tmp/scratch/xvfb-run.MIZ42V’   ‘~/tmp/scratch/xvfb-run.Mk8zm8’ ‘~/tmp/scratch/xvfb-run.MknQud’   ‘~/tmp/scratch/xvfb-run.Ml62QY’ ‘~/tmp/scratch/xvfb-run.NRaRXC’   ‘~/tmp/scratch/xvfb-run.OEAgcM’ ‘~/tmp/scratch/xvfb-run.QRhMTv’   ‘~/tmp/scratch/xvfb-run.QdQQOL’ ‘~/tmp/scratch/xvfb-run.RT4R1a’   ‘~/tmp/scratch/xvfb-run.RxwMWr’ ‘~/tmp/scratch/xvfb-run.S976Pm’   ‘~/tmp/scratch/xvfb-run.TZMDJ8’ ‘~/tmp/scratch/xvfb-run.U0CaHE’   ‘~/tmp/scratch/xvfb-run.V6ayKY’ ‘~/tmp/scratch/xvfb-run.VtAJqb’   ‘~/tmp/scratch/xvfb-run.VuEPac’ ‘~/tmp/scratch/xvfb-run.WnxD0r’   ‘~/tmp/scratch/xvfb-run.WxFbbP’ ‘~/tmp/scratch/xvfb-run.XiDA3D’   ‘~/tmp/scratch/xvfb-run.Y7UMBI’ ‘~/tmp/scratch/xvfb-run.YkGOGE’   ‘~/tmp/scratch/xvfb-run.Z4ZU3H’ ‘~/tmp/scratch/xvfb-run.ZnsG16’   ‘~/tmp/scratch/xvfb-run.Zy94P4’ ‘~/tmp/scratch/xvfb-run.a7TQqy’   ‘~/tmp/scratch/xvfb-run.aZHH5i’ ‘~/tmp/scratch/xvfb-run.arDDP4’   ‘~/tmp/scratch/xvfb-run.av9bmX’ ‘~/tmp/scratch/xvfb-run.cFfOKt’   ‘~/tmp/scratch/xvfb-run.enoZSs’ ‘~/tmp/scratch/xvfb-run.fVVtLM’   ‘~/tmp/scratch/xvfb-run.g3QdvS’ ‘~/tmp/scratch/xvfb-run.gQsvUH’   ‘~/tmp/scratch/xvfb-run.gYNtzt’ ‘~/tmp/scratch/xvfb-run.hukviz’   ‘~/tmp/scratch/xvfb-run.hySaCM’ ‘~/tmp/scratch/xvfb-run.jPqDJo’   ‘~/tmp/scratch/xvfb-run.jYQKMo’ ‘~/tmp/scratch/xvfb-run.jv8soe’   ‘~/tmp/scratch/xvfb-run.mDXn8H’ ‘~/tmp/scratch/xvfb-run.meF0Jb’   ‘~/tmp/scratch/xvfb-run.nyCFNB’ ‘~/tmp/scratch/xvfb-run.rIRXlk’   ‘~/tmp/scratch/xvfb-run.rk0cZ5’ ‘~/tmp/scratch/xvfb-run.rokFfC’   ‘~/tmp/scratch/xvfb-run.sANGuq’ ‘~/tmp/scratch/xvfb-run.tT3RM8’   ‘~/tmp/scratch/xvfb-run.tmy4V8’ ‘~/tmp/scratch/xvfb-run.uP7UTa’   ‘~/tmp/scratch/xvfb-run.vX3qiX’ ‘~/tmp/scratch/xvfb-run.wdVkkj’   ‘~/tmp/scratch/xvfb-run.wjN6Ye’ ‘~/tmp/scratch/xvfb-run.y3CEH7’   ‘~/tmp/scratch/xvfb-run.yzjVK2’ ‘~/tmp/scratch/xvfb-run.z8abxY’   ‘~/tmp/scratch/xvfb-run.zJwbmJ’ ‘~/tmp/scratch/xvfb-run.zlMzXJ’
• DONE

Status: 1 NOTE