- using R Under development (unstable) (2025-10-28 r88973)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-4) 15.2.0
GNU Fortran (Debian 15.2.0-4) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘lolliplot/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘lolliplot’ version ‘0.2.2’
- package encoding: UTF-8
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- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘lolliplot’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [3s/4s] OK
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- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [4s/5s] ERROR
Running examples in ‘lolliplot-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: lolliplot
> ### Title: Lolliplots
> ### Aliases: lolliplot
>
> ### ** Examples
>
> SNP <- c(10, 100, 105, 108, 400, 410, 420, 600, 700, 805, 840, 1400, 1402)
> x <- sample.int(100, length(SNP))
> SNP.gr <- GenomicRanges::GRanges("chr1", IRanges::IRanges(SNP, width=1, names=paste0("snp", SNP)),
+ value1=x, value2=100-x)
> SNP.gr$color <- rep(list(c("red", 'blue')), length(SNP))
> SNP.gr$border <- sample.int(7, length(SNP), replace=TRUE)
> features <- GenomicRanges::GRanges(
+ "chr1", IRanges::IRanges(
+ c(1, 501, 1001),
+ width=c(120, 500, 405),
+ names=paste0("block", 1:3)),
+ color="black",
+ fill=c("#FF8833", "#51C6E6", "#DFA32D"),
+ height=c(0.1, 0.05, 0.08),
+ label.parameter.rot=45)
> lolliplot(SNP.gr, features, type="pie")
Error in S4Vectors:::load_package_gracefully("XVector", "by the range() method ", :
Could not load package XVector. Is it installed?
Note that the XVector package is required by the range() method for
CompressedIRangesList objects. Please install it with:
BiocManager::install("XVector")
Calls: lolliplot ... .local -> .range_CompressedIRangesList -> <Anonymous>
Execution halted
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- DONE
Status: 1 ERROR