• using R Under development (unstable) (2026-08-02 r90338)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-03 16:04:01 UTC
• checking for file ‘lnmCluster/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘lnmCluster’ version ‘0.3.1’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Wangshu Tu <wangshu.tu@carleton.ca>’ The Description field contains   <arXiv:2011.06682>, and is designed for clustering compositional data.   in papers: Tu and Subedi (2021) <arXiv:2101.01871> and Tu and Subedi Please refer to arXiv e-prints via their arXiv DOI <doi:10.48550/arXiv.YYMM.NNNNN>.
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lnmCluster’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-16 (Debian 16.1.0-3) 16.1.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the package can be unloaded cleanly ... [0s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [9s/12s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [63s/77s] OK   Running ‘testthat.R’ [63s/77s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [1s/2s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp08NnPM’ ‘~/tmp/scratch/Rtmp0hLZAF’   ‘~/tmp/scratch/Rtmp1F3i7V’ ‘~/tmp/scratch/Rtmp2Wib7i’   ‘~/tmp/scratch/Rtmp2fXpTc’ ‘~/tmp/scratch/Rtmp2uMYip’   ‘~/tmp/scratch/Rtmp39J80h’ ‘~/tmp/scratch/Rtmp3Jl6Do’   ‘~/tmp/scratch/Rtmp3drmD6’ ‘~/tmp/scratch/Rtmp3fyXHl’   ‘~/tmp/scratch/Rtmp3sPeNB’ ‘~/tmp/scratch/Rtmp44u9sD’   ‘~/tmp/scratch/Rtmp50grnr’ ‘~/tmp/scratch/Rtmp5u9Zv9’   ‘~/tmp/scratch/Rtmp67wuwp’ ‘~/tmp/scratch/Rtmp6BWvNx’   ‘~/tmp/scratch/Rtmp6LXIcm’ ‘~/tmp/scratch/Rtmp6NAegL’   ‘~/tmp/scratch/Rtmp6RDyEw’ ‘~/tmp/scratch/Rtmp72DhZb’   ‘~/tmp/scratch/Rtmp7HS7ii’ ‘~/tmp/scratch/Rtmp7bv4nh’   ‘~/tmp/scratch/Rtmp8QGc51’ ‘~/tmp/scratch/Rtmp9PcVYI’   ‘~/tmp/scratch/Rtmp9vj7N2’ ‘~/tmp/scratch/RtmpABSFT7’   ‘~/tmp/scratch/RtmpBEYvo1’ ‘~/tmp/scratch/RtmpBKIVkC’   ‘~/tmp/scratch/RtmpBiO9XG’ ‘~/tmp/scratch/RtmpBjzgID’   ‘~/tmp/scratch/RtmpCZ4Yid’ ‘~/tmp/scratch/RtmpClmsHm’   ‘~/tmp/scratch/RtmpCyCnh8’ ‘~/tmp/scratch/RtmpDfKGQf’   ‘~/tmp/scratch/RtmpEXmDFO’ ‘~/tmp/scratch/RtmpEuzWoF’   ‘~/tmp/scratch/RtmpF0BShe’ ‘~/tmp/scratch/RtmpFHRm5w’   ‘~/tmp/scratch/RtmpFdybSv’ ‘~/tmp/scratch/RtmpH9Sett’   ‘~/tmp/scratch/RtmpIDnPlY’ ‘~/tmp/scratch/RtmpIYwo0H’   ‘~/tmp/scratch/RtmpJbjfbd’ ‘~/tmp/scratch/RtmpJsFvY3’   ‘~/tmp/scratch/RtmpJzQY9V’ ‘~/tmp/scratch/RtmpK60UCo’   ‘~/tmp/scratch/RtmpLOxglN’ ‘~/tmp/scratch/RtmpMRmTqV’   ‘~/tmp/scratch/RtmpNo2JOb’ ‘~/tmp/scratch/RtmpNt9EiQ’   ‘~/tmp/scratch/RtmpONeLeS’ ‘~/tmp/scratch/RtmpOZ3U8z’   ‘~/tmp/scratch/RtmpOcpXYb’ ‘~/tmp/scratch/RtmpPdu0Nr’   ‘~/tmp/scratch/RtmpPj9KdA’ ‘~/tmp/scratch/RtmpQb8KAg’   ‘~/tmp/scratch/RtmpReOvw6’ ‘~/tmp/scratch/RtmpRl5gqi’   ‘~/tmp/scratch/RtmpSMhC0n’ ‘~/tmp/scratch/RtmpUIAEdU’   ‘~/tmp/scratch/RtmpUKhGag’ ‘~/tmp/scratch/RtmpUgr4q6’   ‘~/tmp/scratch/RtmpUpuQU9’ ‘~/tmp/scratch/RtmpVU9Xlu’   ‘~/tmp/scratch/RtmpVhM0iH’ ‘~/tmp/scratch/RtmpVm0Nj3’   ‘~/tmp/scratch/RtmpWA5lt7’ ‘~/tmp/scratch/RtmpXKrd92’   ‘~/tmp/scratch/RtmpXfCLzI’ ‘~/tmp/scratch/RtmpXpfTrj’   ‘~/tmp/scratch/RtmpYeEaiP’ ‘~/tmp/scratch/RtmpZUZ2N3’   ‘~/tmp/scratch/RtmpaA7aYD’ ‘~/tmp/scratch/RtmpaVAnkQ’   ‘~/tmp/scratch/RtmpaVdmLP’ ‘~/tmp/scratch/RtmpaZkJyg’   ‘~/tmp/scratch/RtmpapUuN9’ ‘~/tmp/scratch/Rtmpb7Jq2a’   ‘~/tmp/scratch/RtmpbQD8Y2’ ‘~/tmp/scratch/Rtmpbb5XnV’   ‘~/tmp/scratch/Rtmpbkg6Ca’ ‘~/tmp/scratch/RtmpcPkOOe’   ‘~/tmp/scratch/RtmpcVL68W’ ‘~/tmp/scratch/RtmpcgkIpV’   ‘~/tmp/scratch/RtmpdLaxDT’ ‘~/tmp/scratch/RtmpdoaUuO’   ‘~/tmp/scratch/RtmpdyYJ50’ ‘~/tmp/scratch/Rtmpe97k6V’   ‘~/tmp/scratch/RtmpeswnRX’ ‘~/tmp/scratch/Rtmpf55LUG’   ‘~/tmp/scratch/RtmpfMTgUT’ ‘~/tmp/scratch/Rtmpg5lRva’   ‘~/tmp/scratch/Rtmpgf0NzZ’ ‘~/tmp/scratch/RtmpgfJqMz’   ‘~/tmp/scratch/Rtmph1yNVD’ ‘~/tmp/scratch/RtmphX8ui8’   ‘~/tmp/scratch/RtmpilOClc’ ‘~/tmp/scratch/Rtmpj3kzYz’   ‘~/tmp/scratch/Rtmpj4xCeH’ ‘~/tmp/scratch/RtmpjavIcM’   ‘~/tmp/scratch/RtmpjzFj46’ ‘~/tmp/scratch/RtmpkBQrAZ’   ‘~/tmp/scratch/RtmpkbPFaQ’ ‘~/tmp/scratch/RtmpksPJnO’   ‘~/tmp/scratch/Rtmpl1ED9Y’ ‘~/tmp/scratch/Rtmplbuzo7’   ‘~/tmp/scratch/RtmpmPveVn’ ‘~/tmp/scratch/RtmpmTkB96’   ‘~/tmp/scratch/Rtmpn1wMB1’ ‘~/tmp/scratch/RtmpnqNVfq’   ‘~/tmp/scratch/RtmpnwyXTE’ ‘~/tmp/scratch/RtmpoNw7iW’   ‘~/tmp/scratch/RtmpoeyKu0’ ‘~/tmp/scratch/RtmponTXTf’   ‘~/tmp/scratch/RtmppggysJ’ ‘~/tmp/scratch/Rtmpq8vJEA’   ‘~/tmp/scratch/Rtmpq9cKli’ ‘~/tmp/scratch/RtmpqxQiJW’   ‘~/tmp/scratch/RtmpqzpQox’ ‘~/tmp/scratch/RtmprKGP52’   ‘~/tmp/scratch/RtmprT8eC3’ ‘~/tmp/scratch/RtmprTtUXP’   ‘~/tmp/scratch/RtmprXZ7aB’ ‘~/tmp/scratch/Rtmprnhfyq’   ‘~/tmp/scratch/Rtmprz2dud’ ‘~/tmp/scratch/Rtmpt7b8rd’   ‘~/tmp/scratch/RtmpuQAf0H’ ‘~/tmp/scratch/RtmpucXwQ2’   ‘~/tmp/scratch/RtmpumaOya’ ‘~/tmp/scratch/RtmpuueM5M’   ‘~/tmp/scratch/RtmpvgWQZT’ ‘~/tmp/scratch/RtmpvjdWL2’   ‘~/tmp/scratch/RtmpvyqcEj’ ‘~/tmp/scratch/RtmpwC8bMd’   ‘~/tmp/scratch/RtmpwEq9s6’ ‘~/tmp/scratch/RtmpwvvNoo’   ‘~/tmp/scratch/RtmpxNeMfs’ ‘~/tmp/scratch/Rtmpy8RJs4’   ‘~/tmp/scratch/RtmpyycYST’ ‘~/tmp/scratch/RtmpzStYu4’   ‘~/tmp/scratch/RtmpzlGRUQ’ ‘~/tmp/scratch/RtmpzsmlSN’   ‘~/tmp/scratch/xvfb-run.1mH6iF’ ‘~/tmp/scratch/xvfb-run.35vxGd’   ‘~/tmp/scratch/xvfb-run.4NyslA’ ‘~/tmp/scratch/xvfb-run.5VxzZb’   ‘~/tmp/scratch/xvfb-run.5qD9lu’ ‘~/tmp/scratch/xvfb-run.5sTPUm’   ‘~/tmp/scratch/xvfb-run.A0A70l’ ‘~/tmp/scratch/xvfb-run.A6Sn7Q’   ‘~/tmp/scratch/xvfb-run.CHJ4SR’ ‘~/tmp/scratch/xvfb-run.CwAa9n’   ‘~/tmp/scratch/xvfb-run.EOFLL1’ ‘~/tmp/scratch/xvfb-run.FBd3UW’   ‘~/tmp/scratch/xvfb-run.FLwj8g’ ‘~/tmp/scratch/xvfb-run.Gk05XA’   ‘~/tmp/scratch/xvfb-run.H2Fn5O’ ‘~/tmp/scratch/xvfb-run.HWAyN2’   ‘~/tmp/scratch/xvfb-run.IDr5tq’ ‘~/tmp/scratch/xvfb-run.IQR4ga’   ‘~/tmp/scratch/xvfb-run.IwZF3Z’ ‘~/tmp/scratch/xvfb-run.L3BPnC’   ‘~/tmp/scratch/xvfb-run.LoptQs’ ‘~/tmp/scratch/xvfb-run.MwzZEZ’   ‘~/tmp/scratch/xvfb-run.OM2qod’ ‘~/tmp/scratch/xvfb-run.PGJhYN’   ‘~/tmp/scratch/xvfb-run.PPHLmx’ ‘~/tmp/scratch/xvfb-run.PecQVD’   ‘~/tmp/scratch/xvfb-run.Qih6Cp’ ‘~/tmp/scratch/xvfb-run.QvZyOa’   ‘~/tmp/scratch/xvfb-run.R6T3kk’ ‘~/tmp/scratch/xvfb-run.RxnBXJ’   ‘~/tmp/scratch/xvfb-run.SdzpTQ’ ‘~/tmp/scratch/xvfb-run.TKxdYz’   ‘~/tmp/scratch/xvfb-run.UzneJg’ ‘~/tmp/scratch/xvfb-run.VTkp5x’   ‘~/tmp/scratch/xvfb-run.VhNkrz’ ‘~/tmp/scratch/xvfb-run.Wgf05j’   ‘~/tmp/scratch/xvfb-run.XKb8xz’ ‘~/tmp/scratch/xvfb-run.XScSlO’   ‘~/tmp/scratch/xvfb-run.XtZRrv’ ‘~/tmp/scratch/xvfb-run.Y9o8Tw’   ‘~/tmp/scratch/xvfb-run.YGN5AD’ ‘~/tmp/scratch/xvfb-run.ZLeMgQ’   ‘~/tmp/scratch/xvfb-run.Zi2C6s’ ‘~/tmp/scratch/xvfb-run.ZmbR35’   ‘~/tmp/scratch/xvfb-run.cIcZOC’ ‘~/tmp/scratch/xvfb-run.caBImK’   ‘~/tmp/scratch/xvfb-run.cleziB’ ‘~/tmp/scratch/xvfb-run.eHZvcm’   ‘~/tmp/scratch/xvfb-run.ey8nyR’ ‘~/tmp/scratch/xvfb-run.gqRiwo’   ‘~/tmp/scratch/xvfb-run.gqgRev’ ‘~/tmp/scratch/xvfb-run.heGAEw’   ‘~/tmp/scratch/xvfb-run.i8PxyM’ ‘~/tmp/scratch/xvfb-run.jNFkYh’   ‘~/tmp/scratch/xvfb-run.jvg5P7’ ‘~/tmp/scratch/xvfb-run.kmaf2O’   ‘~/tmp/scratch/xvfb-run.lyIlXs’ ‘~/tmp/scratch/xvfb-run.mV9Y4j’   ‘~/tmp/scratch/xvfb-run.nbM0Z6’ ‘~/tmp/scratch/xvfb-run.oYemTW’   ‘~/tmp/scratch/xvfb-run.t6f6tg’ ‘~/tmp/scratch/xvfb-run.tD5TVG’   ‘~/tmp/scratch/xvfb-run.uK7a2h’ ‘~/tmp/scratch/xvfb-run.uLtDlF’   ‘~/tmp/scratch/xvfb-run.uSUskH’ ‘~/tmp/scratch/xvfb-run.udltvW’
• DONE

Status: 2 NOTEs