• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:51:49 UTC
• checking for file ‘lme4breeding/DESCRIPTION’ ... OK
• this is package ‘lme4breeding’ version ‘1.1.3’
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lme4breeding’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [13s/16s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [5s/6s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [37s/43s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0CFT7x’ ‘~/tmp/scratch/Rtmp0JkPtQ’   ‘~/tmp/scratch/Rtmp1chXJi’ ‘~/tmp/scratch/Rtmp2baQhL’   ‘~/tmp/scratch/Rtmp2yuUFP’ ‘~/tmp/scratch/Rtmp3KzVWk’   ‘~/tmp/scratch/Rtmp48cESU’ ‘~/tmp/scratch/Rtmp4lLh8e’   ‘~/tmp/scratch/Rtmp4weylr’ ‘~/tmp/scratch/Rtmp52Qfqe’   ‘~/tmp/scratch/Rtmp53mBfM’ ‘~/tmp/scratch/Rtmp5phBNq’   ‘~/tmp/scratch/Rtmp6JU7RL’ ‘~/tmp/scratch/Rtmp7R9Xy1’   ‘~/tmp/scratch/Rtmp7nsgMa’ ‘~/tmp/scratch/Rtmp8ttcXI’   ‘~/tmp/scratch/Rtmp98Utjm’ ‘~/tmp/scratch/Rtmp9m1Q9m’   ‘~/tmp/scratch/Rtmp9sO3VY’ ‘~/tmp/scratch/Rtmp9xkK9U’   ‘~/tmp/scratch/RtmpAmUVaj’ ‘~/tmp/scratch/RtmpAo8cr8’   ‘~/tmp/scratch/RtmpArJrAt’ ‘~/tmp/scratch/RtmpB2VmS6’   ‘~/tmp/scratch/RtmpC4T6PU’ ‘~/tmp/scratch/RtmpC9Zspk’   ‘~/tmp/scratch/RtmpDSk4BB’ ‘~/tmp/scratch/RtmpDarX05’   ‘~/tmp/scratch/RtmpDf6mpV’ ‘~/tmp/scratch/RtmpDfVYsh’   ‘~/tmp/scratch/RtmpDp2uVr’ ‘~/tmp/scratch/RtmpELS1WW’   ‘~/tmp/scratch/RtmpEdwpjD’ ‘~/tmp/scratch/RtmpEpeJEH’   ‘~/tmp/scratch/RtmpFMj07N’ ‘~/tmp/scratch/RtmpFTGWus’   ‘~/tmp/scratch/RtmpG8B1pf’ ‘~/tmp/scratch/RtmpGMAfl7’   ‘~/tmp/scratch/RtmpH1onz9’ ‘~/tmp/scratch/RtmpHKrs3g’   ‘~/tmp/scratch/RtmpHWfGc5’ ‘~/tmp/scratch/RtmpHcJ7xR’   ‘~/tmp/scratch/RtmpIzMo5y’ ‘~/tmp/scratch/RtmpJ1oqzw’   ‘~/tmp/scratch/RtmpJQAFnP’ ‘~/tmp/scratch/RtmpK4ur4U’   ‘~/tmp/scratch/RtmpKjSvjN’ ‘~/tmp/scratch/RtmpLEq3AK’   ‘~/tmp/scratch/RtmpLX8Il2’ ‘~/tmp/scratch/RtmpLZsdkN’   ‘~/tmp/scratch/RtmpLxjwXm’ ‘~/tmp/scratch/RtmpMVYLbf’   ‘~/tmp/scratch/RtmpMa3gtK’ ‘~/tmp/scratch/RtmpMsI9mx’   ‘~/tmp/scratch/RtmpN5aDrz’ ‘~/tmp/scratch/RtmpNzTWDe’   ‘~/tmp/scratch/RtmpPOFpjD’ ‘~/tmp/scratch/RtmpPPlHQU’   ‘~/tmp/scratch/RtmpPw6AoV’ ‘~/tmp/scratch/RtmpQ2vuxo’   ‘~/tmp/scratch/RtmpQBYAbp’ ‘~/tmp/scratch/RtmpQD3p5s’   ‘~/tmp/scratch/RtmpQs9tow’ ‘~/tmp/scratch/RtmpQyQqCx’   ‘~/tmp/scratch/RtmpR3VBSB’ ‘~/tmp/scratch/RtmpRKqtyM’   ‘~/tmp/scratch/RtmpRNMh2L’ ‘~/tmp/scratch/RtmpRedPFA’   ‘~/tmp/scratch/RtmpS93EFv’ ‘~/tmp/scratch/RtmpSHNkL1’   ‘~/tmp/scratch/RtmpSYxXxc’ ‘~/tmp/scratch/RtmpSdtT55’   ‘~/tmp/scratch/RtmpSeCCPs’ ‘~/tmp/scratch/RtmpSmek26’   ‘~/tmp/scratch/RtmpSsc6dG’ ‘~/tmp/scratch/RtmpT446uo’   ‘~/tmp/scratch/RtmpT9oQ4k’ ‘~/tmp/scratch/RtmpTOkgKm’   ‘~/tmp/scratch/RtmpTVPpyE’ ‘~/tmp/scratch/RtmpTgFzpW’   ‘~/tmp/scratch/RtmpU54ZJ4’ ‘~/tmp/scratch/RtmpU9xcKX’   ‘~/tmp/scratch/RtmpUIZlFV’ ‘~/tmp/scratch/RtmpUZoHJs’   ‘~/tmp/scratch/RtmpUt6Xc8’ ‘~/tmp/scratch/RtmpV2WHIb’   ‘~/tmp/scratch/RtmpVI2p8q’ ‘~/tmp/scratch/RtmpVZQwSP’   ‘~/tmp/scratch/RtmpVgc0IB’ ‘~/tmp/scratch/RtmpWn8uyU’   ‘~/tmp/scratch/RtmpX8eMG3’ ‘~/tmp/scratch/RtmpXNG87S’   ‘~/tmp/scratch/RtmpXqiSR3’ ‘~/tmp/scratch/RtmpY3ALVb’   ‘~/tmp/scratch/RtmpYWjIF2’ ‘~/tmp/scratch/RtmpYeGiyW’   ‘~/tmp/scratch/RtmpYkIzEM’ ‘~/tmp/scratch/RtmpZs0zao’   ‘~/tmp/scratch/RtmpaDJgZs’ ‘~/tmp/scratch/RtmpaLUbKT’   ‘~/tmp/scratch/RtmpbLtoTg’ ‘~/tmp/scratch/Rtmpc3erZ2’   ‘~/tmp/scratch/Rtmpc687pj’ ‘~/tmp/scratch/Rtmpc7Rgkc’   ‘~/tmp/scratch/RtmpcaBOlt’ ‘~/tmp/scratch/RtmpcqGv1H’   ‘~/tmp/scratch/RtmpcrDUYD’ ‘~/tmp/scratch/Rtmpd3teSx’   ‘~/tmp/scratch/RtmpdX124x’ ‘~/tmp/scratch/RtmpdnUhkK’   ‘~/tmp/scratch/RtmpeSWI4S’ ‘~/tmp/scratch/RtmpeZqr5Y’   ‘~/tmp/scratch/Rtmpfmv0ao’ ‘~/tmp/scratch/RtmpgdSrX6’   ‘~/tmp/scratch/RtmpghfrDl’ ‘~/tmp/scratch/RtmphCA0S9’   ‘~/tmp/scratch/RtmphS8yYs’ ‘~/tmp/scratch/RtmphZ4Hds’   ‘~/tmp/scratch/RtmpimOjVP’ ‘~/tmp/scratch/Rtmpj8nHrr’   ‘~/tmp/scratch/RtmpjZpEGF’ ‘~/tmp/scratch/RtmpjxYo7u’   ‘~/tmp/scratch/RtmpkQIo5i’ ‘~/tmp/scratch/Rtmpl4N6lT’   ‘~/tmp/scratch/Rtmpl7zXwb’ ‘~/tmp/scratch/RtmplWaUqQ’   ‘~/tmp/scratch/RtmpmN6ndq’ ‘~/tmp/scratch/RtmpoNWDLq’   ‘~/tmp/scratch/RtmpoXcbDn’ ‘~/tmp/scratch/Rtmpog9und’   ‘~/tmp/scratch/RtmpoyzFTo’ ‘~/tmp/scratch/Rtmpp3Gkie’   ‘~/tmp/scratch/Rtmpr7Otth’ ‘~/tmp/scratch/RtmprmQFRt’   ‘~/tmp/scratch/Rtmprr64Vw’ ‘~/tmp/scratch/RtmpsYo0ac’   ‘~/tmp/scratch/Rtmpsn75hd’ ‘~/tmp/scratch/RtmptHkG6b’   ‘~/tmp/scratch/RtmptMrBxt’ ‘~/tmp/scratch/RtmptRY2ah’   ‘~/tmp/scratch/RtmptryLxS’ ‘~/tmp/scratch/Rtmpu2S9Kr’   ‘~/tmp/scratch/RtmpuCcraE’ ‘~/tmp/scratch/RtmpuLT9h5’   ‘~/tmp/scratch/RtmpwhAH6I’ ‘~/tmp/scratch/Rtmpwu9cUR’   ‘~/tmp/scratch/RtmpxRiPJE’ ‘~/tmp/scratch/RtmpzaKdkQ’   ‘~/tmp/scratch/RtmpzcZZL6’ ‘~/tmp/scratch/RtmpzfM3Xn’   ‘~/tmp/scratch/xvfb-run.0WroDu’ ‘~/tmp/scratch/xvfb-run.0wQsJu’   ‘~/tmp/scratch/xvfb-run.14tnuH’ ‘~/tmp/scratch/xvfb-run.1ASNiD’   ‘~/tmp/scratch/xvfb-run.1sKrTF’ ‘~/tmp/scratch/xvfb-run.2cr2fN’   ‘~/tmp/scratch/xvfb-run.3hKaBN’ ‘~/tmp/scratch/xvfb-run.3kiQZ4’   ‘~/tmp/scratch/xvfb-run.45Jfgk’ ‘~/tmp/scratch/xvfb-run.4JOm9M’   ‘~/tmp/scratch/xvfb-run.5D7sTV’ ‘~/tmp/scratch/xvfb-run.6IIWqI’   ‘~/tmp/scratch/xvfb-run.6JY12l’ ‘~/tmp/scratch/xvfb-run.7TEem2’   ‘~/tmp/scratch/xvfb-run.7eVTi5’ ‘~/tmp/scratch/xvfb-run.81nsCy’   ‘~/tmp/scratch/xvfb-run.835GLw’ ‘~/tmp/scratch/xvfb-run.ArzwAu’   ‘~/tmp/scratch/xvfb-run.CnhpdB’ ‘~/tmp/scratch/xvfb-run.DKHGID’   ‘~/tmp/scratch/xvfb-run.Dp8raf’ ‘~/tmp/scratch/xvfb-run.FfWqLH’   ‘~/tmp/scratch/xvfb-run.GSChjP’ ‘~/tmp/scratch/xvfb-run.GroXuX’   ‘~/tmp/scratch/xvfb-run.H7m6Qz’ ‘~/tmp/scratch/xvfb-run.IuFCfe’   ‘~/tmp/scratch/xvfb-run.JLUKWG’ ‘~/tmp/scratch/xvfb-run.KLgVvk’   ‘~/tmp/scratch/xvfb-run.MSXtQ0’ ‘~/tmp/scratch/xvfb-run.OOWiZF’   ‘~/tmp/scratch/xvfb-run.PteZiX’ ‘~/tmp/scratch/xvfb-run.PzQz29’   ‘~/tmp/scratch/xvfb-run.RVaXR0’ ‘~/tmp/scratch/xvfb-run.STsYxz’   ‘~/tmp/scratch/xvfb-run.SkjU1V’ ‘~/tmp/scratch/xvfb-run.Sxj8tB’   ‘~/tmp/scratch/xvfb-run.Thjxm3’ ‘~/tmp/scratch/xvfb-run.Tthcu8’   ‘~/tmp/scratch/xvfb-run.UGWn3h’ ‘~/tmp/scratch/xvfb-run.UdEXBu’   ‘~/tmp/scratch/xvfb-run.WeXN9Z’ ‘~/tmp/scratch/xvfb-run.X5og6P’   ‘~/tmp/scratch/xvfb-run.XfmRQH’ ‘~/tmp/scratch/xvfb-run.YUGo5i’   ‘~/tmp/scratch/xvfb-run.YeOGkE’ ‘~/tmp/scratch/xvfb-run.Ytzu56’   ‘~/tmp/scratch/xvfb-run.aK77GL’ ‘~/tmp/scratch/xvfb-run.ayw364’   ‘~/tmp/scratch/xvfb-run.cVNII9’ ‘~/tmp/scratch/xvfb-run.dCmxgi’   ‘~/tmp/scratch/xvfb-run.eXtZWK’ ‘~/tmp/scratch/xvfb-run.gmizdj’   ‘~/tmp/scratch/xvfb-run.hNU5dD’ ‘~/tmp/scratch/xvfb-run.hOhSLq’   ‘~/tmp/scratch/xvfb-run.iTWTs9’ ‘~/tmp/scratch/xvfb-run.jwxWs6’   ‘~/tmp/scratch/xvfb-run.kUPxgU’ ‘~/tmp/scratch/xvfb-run.kgCPf3’   ‘~/tmp/scratch/xvfb-run.oQNsBh’ ‘~/tmp/scratch/xvfb-run.q3ZH3T’   ‘~/tmp/scratch/xvfb-run.rOJA3g’ ‘~/tmp/scratch/xvfb-run.sRsZb5’   ‘~/tmp/scratch/xvfb-run.ssED00’ ‘~/tmp/scratch/xvfb-run.uDRVv9’   ‘~/tmp/scratch/xvfb-run.v00SVN’ ‘~/tmp/scratch/xvfb-run.w5PV5m’   ‘~/tmp/scratch/xvfb-run.wAguc5’ ‘~/tmp/scratch/xvfb-run.wlai0f’   ‘~/tmp/scratch/xvfb-run.xhmptg’ ‘~/tmp/scratch/xvfb-run.xjX0Xk’
• DONE

Status: 1 NOTE