• using R Under development (unstable) (2026-07-31 r90332)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-08-01 15:52:10 UTC
• checking for file ‘lme4breeding/DESCRIPTION’ ... OK
• this is package ‘lme4breeding’ version ‘1.1.3’
• checking CRAN incoming feasibility ... [2s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lme4breeding’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking whether startup messages can be suppressed ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/16s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/5s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [35s/42s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp0WgQn3’ ‘~/tmp/scratch/Rtmp0eCnSp’   ‘~/tmp/scratch/Rtmp0gcf9C’ ‘~/tmp/scratch/Rtmp1AYG7X’   ‘~/tmp/scratch/Rtmp1Ce6Qr’ ‘~/tmp/scratch/Rtmp1lZaib’   ‘~/tmp/scratch/Rtmp2r3eHc’ ‘~/tmp/scratch/Rtmp2zXBtP’   ‘~/tmp/scratch/Rtmp36qmDX’ ‘~/tmp/scratch/Rtmp3Eki7G’   ‘~/tmp/scratch/Rtmp3kpOp5’ ‘~/tmp/scratch/Rtmp5KkTnO’   ‘~/tmp/scratch/Rtmp5NzCk6’ ‘~/tmp/scratch/Rtmp62JpXf’   ‘~/tmp/scratch/Rtmp7heaSX’ ‘~/tmp/scratch/Rtmp8eNp4m’   ‘~/tmp/scratch/Rtmp9FZf21’ ‘~/tmp/scratch/RtmpA4leaV’   ‘~/tmp/scratch/RtmpASsDLc’ ‘~/tmp/scratch/RtmpAmnkXW’   ‘~/tmp/scratch/RtmpBUp9Jx’ ‘~/tmp/scratch/RtmpBW5es9’   ‘~/tmp/scratch/RtmpCHGu18’ ‘~/tmp/scratch/RtmpCxshvo’   ‘~/tmp/scratch/RtmpCyMyo7’ ‘~/tmp/scratch/RtmpE3XH0j’   ‘~/tmp/scratch/RtmpEKUgpY’ ‘~/tmp/scratch/RtmpEiTWEJ’   ‘~/tmp/scratch/RtmpF8sjjm’ ‘~/tmp/scratch/RtmpFUwKyk’   ‘~/tmp/scratch/RtmpFe0nXu’ ‘~/tmp/scratch/RtmpG1QVca’   ‘~/tmp/scratch/RtmpG6IQSv’ ‘~/tmp/scratch/RtmpH5onRi’   ‘~/tmp/scratch/RtmpHiyNrm’ ‘~/tmp/scratch/RtmpHlmZjx’   ‘~/tmp/scratch/RtmpI317sh’ ‘~/tmp/scratch/RtmpJsceML’   ‘~/tmp/scratch/RtmpJxibby’ ‘~/tmp/scratch/RtmpKDu4EN’   ‘~/tmp/scratch/RtmpLAIVlU’ ‘~/tmp/scratch/RtmpLhB4UH’   ‘~/tmp/scratch/RtmpLugzNc’ ‘~/tmp/scratch/RtmpNEztM5’   ‘~/tmp/scratch/RtmpNLDg6x’ ‘~/tmp/scratch/RtmpNhxON8’   ‘~/tmp/scratch/RtmpNoJg2X’ ‘~/tmp/scratch/RtmpO7JLry’   ‘~/tmp/scratch/RtmpO8jRU3’ ‘~/tmp/scratch/RtmpOGolBh’   ‘~/tmp/scratch/RtmpOKeB79’ ‘~/tmp/scratch/RtmpOQB3Zc’   ‘~/tmp/scratch/RtmpOStT6K’ ‘~/tmp/scratch/RtmpOnKCH6’   ‘~/tmp/scratch/RtmpOqZTpq’ ‘~/tmp/scratch/RtmpP0joEQ’   ‘~/tmp/scratch/RtmpPHvuPF’ ‘~/tmp/scratch/RtmpQ0rWbJ’   ‘~/tmp/scratch/RtmpQsYUMO’ ‘~/tmp/scratch/RtmpRGLSsZ’   ‘~/tmp/scratch/RtmpRjRCPR’ ‘~/tmp/scratch/RtmpSEhw2Z’   ‘~/tmp/scratch/RtmpSm5PCm’ ‘~/tmp/scratch/RtmpTGIojx’   ‘~/tmp/scratch/RtmpTRGIzT’ ‘~/tmp/scratch/RtmpTbyE4x’   ‘~/tmp/scratch/RtmpTgF08x’ ‘~/tmp/scratch/RtmpU7odI2’   ‘~/tmp/scratch/RtmpUAPruT’ ‘~/tmp/scratch/RtmpUqQThw’   ‘~/tmp/scratch/RtmpVoPDx7’ ‘~/tmp/scratch/RtmpWT1zni’   ‘~/tmp/scratch/RtmpX6HQey’ ‘~/tmp/scratch/RtmpXPI2mV’   ‘~/tmp/scratch/RtmpXij8y3’ ‘~/tmp/scratch/RtmpXzZCHR’   ‘~/tmp/scratch/RtmpY4bnQU’ ‘~/tmp/scratch/RtmpYXPfMR’   ‘~/tmp/scratch/RtmpYc7ARs’ ‘~/tmp/scratch/RtmpYjZyNZ’   ‘~/tmp/scratch/RtmpZRdyMx’ ‘~/tmp/scratch/RtmpaIUs6g’   ‘~/tmp/scratch/RtmpaNUD1x’ ‘~/tmp/scratch/RtmpaUMrze’   ‘~/tmp/scratch/Rtmpah4wKT’ ‘~/tmp/scratch/RtmpboMmEK’   ‘~/tmp/scratch/RtmpcGKaIV’ ‘~/tmp/scratch/RtmpcoqxRu’   ‘~/tmp/scratch/RtmpcxxYj9’ ‘~/tmp/scratch/RtmpdFcAZC’   ‘~/tmp/scratch/RtmpdJXp0H’ ‘~/tmp/scratch/RtmpdTK4dt’   ‘~/tmp/scratch/Rtmpe0ppuM’ ‘~/tmp/scratch/RtmpecoPHN’   ‘~/tmp/scratch/RtmpepmVTN’ ‘~/tmp/scratch/RtmpesNxze’   ‘~/tmp/scratch/Rtmpf2mvsR’ ‘~/tmp/scratch/RtmpfLZUoO’   ‘~/tmp/scratch/RtmpfTFJex’ ‘~/tmp/scratch/RtmpfbvzYZ’   ‘~/tmp/scratch/RtmpfcKCPG’ ‘~/tmp/scratch/RtmpfiVqvM’   ‘~/tmp/scratch/RtmpgCTG3g’ ‘~/tmp/scratch/RtmpggWKdE’   ‘~/tmp/scratch/RtmphX3Ew5’ ‘~/tmp/scratch/RtmphZl6Hb’   ‘~/tmp/scratch/RtmpheFxy4’ ‘~/tmp/scratch/RtmphuiSdZ’   ‘~/tmp/scratch/Rtmpi1sozg’ ‘~/tmp/scratch/RtmpiubzgC’   ‘~/tmp/scratch/RtmpjBklol’ ‘~/tmp/scratch/RtmpjR9VLs’   ‘~/tmp/scratch/RtmpjbSUKV’ ‘~/tmp/scratch/RtmpkAq2l6’   ‘~/tmp/scratch/RtmpkjZcqF’ ‘~/tmp/scratch/RtmplfPVod’   ‘~/tmp/scratch/Rtmplr00UP’ ‘~/tmp/scratch/RtmpmeH809’   ‘~/tmp/scratch/RtmpnB4E2N’ ‘~/tmp/scratch/RtmpnOu7Th’   ‘~/tmp/scratch/RtmpnYqhhP’ ‘~/tmp/scratch/RtmpnbWObM’   ‘~/tmp/scratch/RtmpndPUCt’ ‘~/tmp/scratch/Rtmpns7hhz’   ‘~/tmp/scratch/Rtmpq5GYJk’ ‘~/tmp/scratch/RtmpqSERNb’   ‘~/tmp/scratch/Rtmpqk31KM’ ‘~/tmp/scratch/Rtmpqk5eyK’   ‘~/tmp/scratch/RtmprRB9Ck’ ‘~/tmp/scratch/RtmprkQoMZ’   ‘~/tmp/scratch/Rtmps2U2kf’ ‘~/tmp/scratch/RtmptYUGzV’   ‘~/tmp/scratch/RtmptedTf9’ ‘~/tmp/scratch/Rtmpu1nPGx’   ‘~/tmp/scratch/RtmpuLOvHa’ ‘~/tmp/scratch/RtmpurOI1F’   ‘~/tmp/scratch/RtmpvaiN50’ ‘~/tmp/scratch/RtmpvnJLnu’   ‘~/tmp/scratch/Rtmpwbo3B5’ ‘~/tmp/scratch/RtmpwlyIuz’   ‘~/tmp/scratch/Rtmpwmni31’ ‘~/tmp/scratch/RtmpyRVd4u’   ‘~/tmp/scratch/Rtmpyttcnm’ ‘~/tmp/scratch/Rtmpzq4Wi1’   ‘~/tmp/scratch/Rtmpzw717I’ ‘~/tmp/scratch/xvfb-run.06Mi4V’   ‘~/tmp/scratch/xvfb-run.0EkriS’ ‘~/tmp/scratch/xvfb-run.0pTBrS’   ‘~/tmp/scratch/xvfb-run.1AdEOH’ ‘~/tmp/scratch/xvfb-run.1An8wm’   ‘~/tmp/scratch/xvfb-run.1BtvX5’ ‘~/tmp/scratch/xvfb-run.2eruZm’   ‘~/tmp/scratch/xvfb-run.3XDXGF’ ‘~/tmp/scratch/xvfb-run.3ba6TT’   ‘~/tmp/scratch/xvfb-run.4o6z7p’ ‘~/tmp/scratch/xvfb-run.4zKhna’   ‘~/tmp/scratch/xvfb-run.5DYThK’ ‘~/tmp/scratch/xvfb-run.6XjhVi’   ‘~/tmp/scratch/xvfb-run.6aTahY’ ‘~/tmp/scratch/xvfb-run.8cYGmT’   ‘~/tmp/scratch/xvfb-run.96646M’ ‘~/tmp/scratch/xvfb-run.9Ljr0B’   ‘~/tmp/scratch/xvfb-run.A5wXhY’ ‘~/tmp/scratch/xvfb-run.BKk3h4’   ‘~/tmp/scratch/xvfb-run.BhzMVg’ ‘~/tmp/scratch/xvfb-run.CBTWyV’   ‘~/tmp/scratch/xvfb-run.CtzvhR’ ‘~/tmp/scratch/xvfb-run.EkdWx2’   ‘~/tmp/scratch/xvfb-run.En2okw’ ‘~/tmp/scratch/xvfb-run.GElxw2’   ‘~/tmp/scratch/xvfb-run.GOkurR’ ‘~/tmp/scratch/xvfb-run.GvQLiM’   ‘~/tmp/scratch/xvfb-run.HEglrO’ ‘~/tmp/scratch/xvfb-run.KKDSw4’   ‘~/tmp/scratch/xvfb-run.LTBJQY’ ‘~/tmp/scratch/xvfb-run.LwgCyn’   ‘~/tmp/scratch/xvfb-run.OSLQeK’ ‘~/tmp/scratch/xvfb-run.PhdDN2’   ‘~/tmp/scratch/xvfb-run.QLh8WV’ ‘~/tmp/scratch/xvfb-run.QvhOgq’   ‘~/tmp/scratch/xvfb-run.R6ar7r’ ‘~/tmp/scratch/xvfb-run.TC96nu’   ‘~/tmp/scratch/xvfb-run.Vw3qX8’ ‘~/tmp/scratch/xvfb-run.X5yIzb’   ‘~/tmp/scratch/xvfb-run.Y536RX’ ‘~/tmp/scratch/xvfb-run.YLkFPo’   ‘~/tmp/scratch/xvfb-run.YZOKPw’ ‘~/tmp/scratch/xvfb-run.ZHT9kR’   ‘~/tmp/scratch/xvfb-run.aNqBDS’ ‘~/tmp/scratch/xvfb-run.bN3YMx’   ‘~/tmp/scratch/xvfb-run.cWJ18V’ ‘~/tmp/scratch/xvfb-run.dSR0SB’   ‘~/tmp/scratch/xvfb-run.dYIxv7’ ‘~/tmp/scratch/xvfb-run.hMZBI7’   ‘~/tmp/scratch/xvfb-run.hQ0J8M’ ‘~/tmp/scratch/xvfb-run.irp4GM’   ‘~/tmp/scratch/xvfb-run.jNOHah’ ‘~/tmp/scratch/xvfb-run.lYtlb0’   ‘~/tmp/scratch/xvfb-run.m9IIEw’ ‘~/tmp/scratch/xvfb-run.miSGNu’   ‘~/tmp/scratch/xvfb-run.nHot27’ ‘~/tmp/scratch/xvfb-run.nzcgEV’   ‘~/tmp/scratch/xvfb-run.oh91gS’ ‘~/tmp/scratch/xvfb-run.okpKAd’   ‘~/tmp/scratch/xvfb-run.p3sL71’ ‘~/tmp/scratch/xvfb-run.pMdamM’   ‘~/tmp/scratch/xvfb-run.pN15S2’ ‘~/tmp/scratch/xvfb-run.rUGAdQ’   ‘~/tmp/scratch/xvfb-run.vFaSI2’ ‘~/tmp/scratch/xvfb-run.xRe7Cu’   ‘~/tmp/scratch/xvfb-run.yEgan2’ ‘~/tmp/scratch/xvfb-run.yGYYLI’   ‘~/tmp/scratch/xvfb-run.zUHCb3’
• DONE

Status: 1 NOTE