• using R Under development (unstable) (2026-07-30 r90327)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-16 (Debian 16.1.0-3) 16.1.0     GNU Fortran (Debian 16.1.0-3) 16.1.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8 * current time: 2026-07-31 15:50:57 UTC
• checking for file ‘lipidomeR/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘lipidomeR’ version ‘0.1.2’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] NOTE Maintainer: ‘Tommi Suvitaival <TSUV0001@RegionH.DK>’ Found the following URLs which should use \doi (with the DOI name only):   File ‘cancerlipidome.Rd’:     http://dx.doi.org/10.21228/M8RX01     https://doi.org/10.3390/metabo8030041   File ‘humanlipidome.Rd’:     http://dx.doi.org/10.21228/M8MW26     https://doi.org/10.1194/jlr.M009449   File ‘liverlipidome.Rd’:     http://dx.doi.org/10.21228/M8MW26     https://dx.doi.org/10.1194/jlr.P056002
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘lipidomeR’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [16s/20s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [10s/12s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• checking for new files in some other directories ... NOTE Found the following files/directories:   ‘~/tmp/scratch/Rtmp2TDT5B’ ‘~/tmp/scratch/Rtmp3F3vyl’   ‘~/tmp/scratch/Rtmp3If8MB’ ‘~/tmp/scratch/Rtmp4aDO9H’   ‘~/tmp/scratch/Rtmp4sTWUK’ ‘~/tmp/scratch/Rtmp53mBfM’   ‘~/tmp/scratch/Rtmp6GJKZc’ ‘~/tmp/scratch/Rtmp6JU7RL’   ‘~/tmp/scratch/Rtmp6M8Ovh’ ‘~/tmp/scratch/Rtmp6NTsqE’   ‘~/tmp/scratch/Rtmp6RPjZI’ ‘~/tmp/scratch/Rtmp6lakds’   ‘~/tmp/scratch/Rtmp6roEIi’ ‘~/tmp/scratch/Rtmp76PQmG’   ‘~/tmp/scratch/Rtmp7isZYo’ ‘~/tmp/scratch/Rtmp8LiJaI’   ‘~/tmp/scratch/Rtmp8ORBla’ ‘~/tmp/scratch/Rtmp9eQjIH’   ‘~/tmp/scratch/Rtmp9y2oAf’ ‘~/tmp/scratch/RtmpBjO9Qe’   ‘~/tmp/scratch/RtmpCJMVGW’ ‘~/tmp/scratch/RtmpCwG1Kt’   ‘~/tmp/scratch/RtmpDCSKeu’ ‘~/tmp/scratch/RtmpDXgR9D’   ‘~/tmp/scratch/RtmpDaUSch’ ‘~/tmp/scratch/RtmpDbZMzE’   ‘~/tmp/scratch/RtmpDr5cUd’ ‘~/tmp/scratch/RtmpDwbLXJ’   ‘~/tmp/scratch/RtmpEZ083Y’ ‘~/tmp/scratch/RtmpEtuVCk’   ‘~/tmp/scratch/RtmpGFnIus’ ‘~/tmp/scratch/RtmpGO6Zbn’   ‘~/tmp/scratch/RtmpHCS6gA’ ‘~/tmp/scratch/RtmpHzrlWG’   ‘~/tmp/scratch/RtmpIQZOUx’ ‘~/tmp/scratch/RtmpIYxlu8’   ‘~/tmp/scratch/RtmpIrREiw’ ‘~/tmp/scratch/RtmpJX10JV’   ‘~/tmp/scratch/RtmpJbq50D’ ‘~/tmp/scratch/RtmpJijYVK’   ‘~/tmp/scratch/RtmpJoNijO’ ‘~/tmp/scratch/RtmpL9dIUB’   ‘~/tmp/scratch/RtmpLB8qI1’ ‘~/tmp/scratch/RtmpLNSH8O’   ‘~/tmp/scratch/RtmpLT16nQ’ ‘~/tmp/scratch/RtmpLTDDXL’   ‘~/tmp/scratch/RtmpM8i4xm’ ‘~/tmp/scratch/RtmpMS6smq’   ‘~/tmp/scratch/RtmpMTm0bq’ ‘~/tmp/scratch/RtmpMa3gtK’   ‘~/tmp/scratch/RtmpNzTWDe’ ‘~/tmp/scratch/RtmpOAYosT’   ‘~/tmp/scratch/RtmpOmcBwz’ ‘~/tmp/scratch/RtmpPT3ZPN’   ‘~/tmp/scratch/RtmpQLkLUG’ ‘~/tmp/scratch/RtmpR5abOZ’   ‘~/tmp/scratch/RtmpR5i13V’ ‘~/tmp/scratch/RtmpRCHyuG’   ‘~/tmp/scratch/RtmpRNMh2L’ ‘~/tmp/scratch/RtmpSDLafj’   ‘~/tmp/scratch/RtmpSHNkL1’ ‘~/tmp/scratch/RtmpSQFmVs’   ‘~/tmp/scratch/RtmpSeCCPs’ ‘~/tmp/scratch/RtmpSsc6dG’   ‘~/tmp/scratch/RtmpT446uo’ ‘~/tmp/scratch/RtmpT6z6d8’   ‘~/tmp/scratch/RtmpT9oQ4k’ ‘~/tmp/scratch/RtmpTPt9Pe’   ‘~/tmp/scratch/RtmpTgFzpW’ ‘~/tmp/scratch/RtmpTwuY15’   ‘~/tmp/scratch/RtmpTysVar’ ‘~/tmp/scratch/RtmpU1aa5p’   ‘~/tmp/scratch/RtmpU4QtqM’ ‘~/tmp/scratch/RtmpU54ZJ4’   ‘~/tmp/scratch/RtmpU9xcKX’ ‘~/tmp/scratch/RtmpUIZlFV’   ‘~/tmp/scratch/RtmpUV7BEy’ ‘~/tmp/scratch/RtmpUZoHJs’   ‘~/tmp/scratch/RtmpUni3QT’ ‘~/tmp/scratch/RtmpVKWjMG’   ‘~/tmp/scratch/RtmpWQslzr’ ‘~/tmp/scratch/RtmpWbtniX’   ‘~/tmp/scratch/RtmpWgAOkk’ ‘~/tmp/scratch/RtmpXZ6vdf’   ‘~/tmp/scratch/RtmpXhRMAh’ ‘~/tmp/scratch/RtmpYDWp0F’   ‘~/tmp/scratch/RtmpYPdRtl’ ‘~/tmp/scratch/RtmpYWjIF2’   ‘~/tmp/scratch/RtmpZcdxq2’ ‘~/tmp/scratch/RtmpZvH4Vl’   ‘~/tmp/scratch/Rtmpa56OSu’ ‘~/tmp/scratch/RtmpaGe1Jo’   ‘~/tmp/scratch/RtmpaoJvCW’ ‘~/tmp/scratch/Rtmpb2tt3J’   ‘~/tmp/scratch/RtmpbUKlz5’ ‘~/tmp/scratch/Rtmpc7Rgkc’   ‘~/tmp/scratch/RtmpcQYNWD’ ‘~/tmp/scratch/RtmpdLHDPn’   ‘~/tmp/scratch/RtmpeZMjfr’ ‘~/tmp/scratch/RtmpewKV2U’   ‘~/tmp/scratch/Rtmpfgy4Lt’ ‘~/tmp/scratch/Rtmpfrrg9G’   ‘~/tmp/scratch/RtmphVrC8A’ ‘~/tmp/scratch/Rtmphdiku6’   ‘~/tmp/scratch/RtmphfunSZ’ ‘~/tmp/scratch/Rtmpi2Lcm2’   ‘~/tmp/scratch/RtmpiHGEX5’ ‘~/tmp/scratch/RtmpiPpDk4’   ‘~/tmp/scratch/Rtmpigm6ej’ ‘~/tmp/scratch/Rtmpj5Fm9N’   ‘~/tmp/scratch/Rtmpj6Ievn’ ‘~/tmp/scratch/RtmpjL2Mld’   ‘~/tmp/scratch/RtmpjOG1oM’ ‘~/tmp/scratch/RtmpjObBC1’   ‘~/tmp/scratch/RtmpjdDTRu’ ‘~/tmp/scratch/RtmpjempY9’   ‘~/tmp/scratch/RtmpkYHDiS’ ‘~/tmp/scratch/RtmpkfzkEd’   ‘~/tmp/scratch/Rtmpl4xPxN’ ‘~/tmp/scratch/RtmplMYEBw’   ‘~/tmp/scratch/RtmplWaUqQ’ ‘~/tmp/scratch/RtmplrRni8’   ‘~/tmp/scratch/Rtmpm1reYk’ ‘~/tmp/scratch/RtmpmdUvMv’   ‘~/tmp/scratch/Rtmpo5orI1’ ‘~/tmp/scratch/RtmpoNWDLq’   ‘~/tmp/scratch/RtmpoPaDbG’ ‘~/tmp/scratch/Rtmpoab6fb’   ‘~/tmp/scratch/Rtmpp3IMhU’ ‘~/tmp/scratch/RtmppZ9kyN’   ‘~/tmp/scratch/RtmppoUemK’ ‘~/tmp/scratch/Rtmppzqj0y’   ‘~/tmp/scratch/RtmpqAT1Gt’ ‘~/tmp/scratch/RtmpqxaJ7Z’   ‘~/tmp/scratch/Rtmpr73QD7’ ‘~/tmp/scratch/Rtmpr8NpBB’   ‘~/tmp/scratch/RtmprZtDvW’ ‘~/tmp/scratch/RtmpsJ2vnn’   ‘~/tmp/scratch/Rtmpss2Slt’ ‘~/tmp/scratch/Rtmpt7hua3’   ‘~/tmp/scratch/RtmptGBkLg’ ‘~/tmp/scratch/RtmptryLxS’   ‘~/tmp/scratch/RtmpuLT9h5’ ‘~/tmp/scratch/Rtmpvdr0OF’   ‘~/tmp/scratch/RtmpwYCFX5’ ‘~/tmp/scratch/Rtmpws6JC8’   ‘~/tmp/scratch/Rtmpx3mgl8’ ‘~/tmp/scratch/RtmpxaGtwx’   ‘~/tmp/scratch/RtmpySkEcL’ ‘~/tmp/scratch/RtmpymbCX6’   ‘~/tmp/scratch/Rtmpz5QtnK’   ‘~/tmp/scratch/quarto-session24b9383f9f79ca94’   ‘~/tmp/scratch/xvfb-run.0BX1R3’ ‘~/tmp/scratch/xvfb-run.0WroDu’   ‘~/tmp/scratch/xvfb-run.1PtFGG’ ‘~/tmp/scratch/xvfb-run.2DWKXc’   ‘~/tmp/scratch/xvfb-run.3hKaBN’ ‘~/tmp/scratch/xvfb-run.45Jfgk’   ‘~/tmp/scratch/xvfb-run.4rglu8’ ‘~/tmp/scratch/xvfb-run.5k9o2A’   ‘~/tmp/scratch/xvfb-run.6EnBWN’ ‘~/tmp/scratch/xvfb-run.6IIWqI’   ‘~/tmp/scratch/xvfb-run.71erlv’ ‘~/tmp/scratch/xvfb-run.7W7R4S’   ‘~/tmp/scratch/xvfb-run.835GLw’ ‘~/tmp/scratch/xvfb-run.8Yiatw’   ‘~/tmp/scratch/xvfb-run.8vUQcf’ ‘~/tmp/scratch/xvfb-run.AESQnQ’   ‘~/tmp/scratch/xvfb-run.AHHBNp’ ‘~/tmp/scratch/xvfb-run.AXwaCD’   ‘~/tmp/scratch/xvfb-run.AY2W50’ ‘~/tmp/scratch/xvfb-run.BbDB6F’   ‘~/tmp/scratch/xvfb-run.FcqlFO’ ‘~/tmp/scratch/xvfb-run.FfWqLH’   ‘~/tmp/scratch/xvfb-run.HA4VLI’ ‘~/tmp/scratch/xvfb-run.LwaCaJ’   ‘~/tmp/scratch/xvfb-run.MBArrm’ ‘~/tmp/scratch/xvfb-run.MSXtQ0’   ‘~/tmp/scratch/xvfb-run.NVAjzE’ ‘~/tmp/scratch/xvfb-run.O0JavY’   ‘~/tmp/scratch/xvfb-run.Oeqi3o’ ‘~/tmp/scratch/xvfb-run.REOz0a’   ‘~/tmp/scratch/xvfb-run.RKcQ6X’ ‘~/tmp/scratch/xvfb-run.RLQhKc’   ‘~/tmp/scratch/xvfb-run.RVaXR0’ ‘~/tmp/scratch/xvfb-run.SlpfVN’   ‘~/tmp/scratch/xvfb-run.SmTmRJ’ ‘~/tmp/scratch/xvfb-run.Sxj8tB’   ‘~/tmp/scratch/xvfb-run.TTaMlR’ ‘~/tmp/scratch/xvfb-run.TnZqA5’   ‘~/tmp/scratch/xvfb-run.TrYZAA’ ‘~/tmp/scratch/xvfb-run.UdEXBu’   ‘~/tmp/scratch/xvfb-run.VZNBf4’ ‘~/tmp/scratch/xvfb-run.VwdBXx’   ‘~/tmp/scratch/xvfb-run.XfyW2w’ ‘~/tmp/scratch/xvfb-run.Z0K71p’   ‘~/tmp/scratch/xvfb-run.ZHzHEu’ ‘~/tmp/scratch/xvfb-run.ZNbfpH’   ‘~/tmp/scratch/xvfb-run.aJpMLD’ ‘~/tmp/scratch/xvfb-run.aK77GL’   ‘~/tmp/scratch/xvfb-run.bu6X68’ ‘~/tmp/scratch/xvfb-run.cMdEnO’   ‘~/tmp/scratch/xvfb-run.dTNHLP’ ‘~/tmp/scratch/xvfb-run.dtw7mH’   ‘~/tmp/scratch/xvfb-run.fNuqr1’ ‘~/tmp/scratch/xvfb-run.fZFKiy’   ‘~/tmp/scratch/xvfb-run.fiF7lk’ ‘~/tmp/scratch/xvfb-run.hYuWwh’   ‘~/tmp/scratch/xvfb-run.hzXUjx’ ‘~/tmp/scratch/xvfb-run.i5pmzH’   ‘~/tmp/scratch/xvfb-run.iTWTs9’ ‘~/tmp/scratch/xvfb-run.kWqiGN’   ‘~/tmp/scratch/xvfb-run.lWWE7x’ ‘~/tmp/scratch/xvfb-run.obqrsF’   ‘~/tmp/scratch/xvfb-run.q3MuP4’ ‘~/tmp/scratch/xvfb-run.qHehgL’   ‘~/tmp/scratch/xvfb-run.syiilI’ ‘~/tmp/scratch/xvfb-run.tgEKiJ’   ‘~/tmp/scratch/xvfb-run.wlai0f’ ‘~/tmp/scratch/xvfb-run.xXWGbT’   ‘~/.cache/quarto/sass/sass.kv-shm’ ‘~/.cache/quarto/sass/sass.kv-wal’
• DONE

Status: 2 NOTEs